Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p15750 Brassica napus
A06p09570 Brassica napus
A08p33170 Brassica napus
A09p64280 Brassica napus
Aa31LG1G2840 Aethionema arabicum
Aa31LG3G8680 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2954 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2465 Anthoceros agrestis
Actinidia03119 Actinidia chinensis
Actinidia21806 Actinidia chinensis
Actinidia24448 Actinidia chinensis
Actinidia24715 Actinidia chinensis
Actinidia26013 Actinidia chinensis
Actinidia31165 Actinidia chinensis
Actinidia31817 Actinidia chinensis
Ah.14g083270 Amaranthus hybridus
AL1G23060 Arabidopsis lyrata
AL8G26650 Arabidopsis lyrata
Aqoxy2G00243 Aquilegia oxysepala
Aqoxy2G04120 Aquilegia oxysepala
Aqoxy3G00883 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0698HC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3W57F5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HN068X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YG2WAC Arachis hypogaea
AT1G11890 Arabidopsis thaliana
AT5G52270 Arabidopsis thaliana
ATR0061G001 Amborella trichopoda
ATR0665G155 Amborella trichopoda
Atru.chr1.4098 Acer truncatum
Atru.chr1.463 Acer truncatum
AUR62010910 Chenopodium quinoa
AUR62015990 Chenopodium quinoa
AUR62021198 Chenopodium quinoa
AUR62021415 Chenopodium quinoa
AUR62029000 Chenopodium quinoa
BcaB01g04198 Brassica carinata
BcaB03g13223 Brassica carinata
BcaC05g25244 Brassica carinata
BolC3t14239H Brassica oleracea
BolC5t29877H Brassica oleracea
BolC8t49131H Brassica oleracea
BolC8t52326H Brassica oleracea
BraA03t10865Z Brassica rapa
BraA06t24147Z Brassica rapa
BraA08t35235Z Brassica rapa
BraA09t41771Z Brassica rapa
C01p45940 Brassica napus
C03p18420 Brassica napus
C05p11280 Brassica napus
C08p15010 Brassica napus
C08p47890 Brassica napus
CAN.G1243.10 Capsicum annuum
CAN.G1382.8 Capsicum annuum
CAN.G862.34 Capsicum annuum
CANSAT21G1054 Cannabis sativa
CANSAT21G1374 Cannabis sativa
CANSAT56G1234 Cannabis sativa
CANSAT78G0763 Cannabis sativa
CARHR012210 Cardamine hirsuta
CARHR265240 Cardamine hirsuta
Carub.0001s1155 Capsella rubella
Carub.0008s1236 Capsella rubella
Ca_04808_v3 Cicer arietinum L.
CBR_g45459 Chara braunii
Cc02_g03040 Coffea canephora
Cc04_g00990 Coffea canephora
CDE05G2396 Ceratophyllum demersum
Cfa003501 Carpinus fangiana
Cfa003504 Carpinus fangiana
Cfa024614 Carpinus fangiana
Ciclev10005834m.g Citrus clementina
Ciclev10026450m.g Citrus clementina
CiPaw.01G215100 Carya illinoinensis
CiPaw.02G133600 Carya illinoinensis
CiPaw.04G070600 Carya illinoinensis
CiPaw.09G079600 Carya illinoinensis
ClCG05G008020 Citrullus lanatus
ClCG07G014420 Citrullus lanatus
ClCG09G001170 Citrullus lanatus
COL.COLO4_14303 Corchorus olitorius
COL.COLO4_30811 Corchorus olitorius
Cpa.g.sc25.155 Carica papaya
Cre12.g554700 Chlamydomonas reinhardtii
CsaV3_3G017070 Cucumis sativus L.
CsaV3_3G030880 Cucumis sativus L.
CsaV3_7G034220 Cucumis sativus L.
CSS0007843 Camellia sinensis var. sinensis
CSS0012586 Camellia sinensis var. sinensis
CSS0028867 Camellia sinensis var. sinensis
DCAR_016104 Daucus carota
Dinv02945 Davidia involucrata
Dinv20405 Davidia involucrata
Dinv28446 Davidia involucrata
Duzib205G0502 Durio zibethinus
Duzib235G0416 Durio zibethinus
ECA234G0971 Erigeron canadensis
ECA238G1948 Erigeron canadensis
ECA247G2740 Erigeron canadensis
EL10Ac3g05648 Beta vulgaris
EL10Ac8g18386 Beta vulgaris
Eucgr.F02475 Eucalyptus grandis
Eucgr.K00252 Eucalyptus grandis
FAN02G1493 Fragaria x ananassa
FAN02G4131 Fragaria x ananassa
FAN05G2217 Fragaria x ananassa
FAN05G2742 Fragaria x ananassa
FAN09G3702 Fragaria x ananassa
FAN09G4232 Fragaria x ananassa
FAN14G5104 Fragaria x ananassa
FAN14G5281 Fragaria x ananassa
FvH4_6g35230 Fragaria vesca
FvH4_6g47281 Fragaria vesca
Glyma.07G042400 Glycine max
Glyma.10G236500 Glycine max
Glyma.16G010800 Glycine max
Glyma.20G158000 Glycine max
Gohir.A05G138600 Gossypium hirsutum
Gohir.A10G056500 Gossypium hirsutum
Gohir.A12G258100 Gossypium hirsutum
Gohir.D05G140800 Gossypium hirsutum
Gohir.D08G229100 Gossypium hirsutum
Gohir.D10G058400 Gossypium hirsutum
Gohir.D12G259400 Gossypium hirsutum
Gorai.005G001200 Gossypium raimondii
Gorai.007G070900 Gossypium raimondii
Gorai.007G258300 Gossypium raimondii
Gorai.008G277800 Gossypium raimondii
Gorai.009G145000 Gossypium raimondii
Gorai.011G062500 Gossypium raimondii
GSVIVG01016709001 Vitis vinifera
GSVIVG01028983001 Vitis vinifera
HanXRQChr04g0094431 Helianthus annuus
HanXRQChr07g0207051 Helianthus annuus
HanXRQChr10g0311891 Helianthus annuus
Haze_13720 Corylus avellana
Haze_16074 Corylus avellana
Haze_16079 Corylus avellana
Haze_26378 Corylus avellana
Haze_27782 Corylus avellana
Hma1.2p1_0090F.1_g046040 Hydrangea macrophylla
Hma1.2p1_0229F.1_g096800 Hydrangea macrophylla
HPP92_009004 Vanilla planifolia
Hund00683 Selenicereus undatus
Hund11751 Selenicereus undatus
Hund12991 Selenicereus undatus
Lalb_Chr04g0253761 Lupinus albus
Lalb_Chr10g0101291 Lupinus albus
Lalb_Chr10g0101301 Lupinus albus
Lalb_Chr17g0343421 Lupinus albus
Lalb_Chr17g0343431 Lupinus albus
Lalb_Chr21g0305021 Lupinus albus
Lj1A1142T62 Lonicera japonica
Lj1A996T64 Lonicera japonica
Lj3g0000009 Lotus japonicus
Lj9A535G48 Lonicera japonica
Lsat_1_v5_gn_1_37780 Lactuca sativa
Lsat_1_v5_gn_2_131881 Lactuca sativa
Lsat_1_v5_gn_5_136820 Lactuca sativa
Manes.04G125400 Manihot esculenta
Manes.04G148400 Manihot esculenta
Manes.11G015900 Manihot esculenta
Manes.14G026200 Manihot esculenta
Mapoly0023s0071 Marchantia polymorpha
MBI04_g25411_MAGBIO Magnolia biondii
MBI18_g29068_MAGBIO Magnolia biondii
MCO12G219 Micromonas commoda
MD01G1200300 Malus domestica
MD07G1268100 Malus domestica
MD09G1177400 Malus domestica
MD17G1149000 Malus domestica
Medtr1g100663 Medicago truncatula
Medtr8g022210 Medicago truncatula
MELO3C024331.2 Cucumis melo
MELO3C031642.2 Cucumis melo
Migut.D00923 Erythranthe guttata
MSTRG.10929 Avicennia marina
MSTRG.22533 Avicennia marina
MSTRG.8741 Avicennia marina
Nitab4.5_0000716g0080 Nicotiana tabacum
Nitab4.5_0002716g0100 Nicotiana tabacum
Nitab4.5_0003137g0060 Nicotiana tabacum
Nitab4.5_0004193g0020 Nicotiana tabacum
Nitab4.5_0006232g0080 Nicotiana tabacum
Nitab4.5_0006425g0020 Nicotiana tabacum
Nitab4.5_0010758g0020 Nicotiana tabacum
Nitab4.5_0012739g0020 Nicotiana tabacum
Nn1g01445 Nelumbo nucifera
Nn4g24517 Nelumbo nucifera
Nn8g41149 Nelumbo nucifera
Oeu005589.1 Olea europaea
Oeu008521.1 Olea europaea
Oeu021784.1 Olea europaea
Os03g0791500 Oryza sativa ssp. japonica
Os06g0198800 Oryza sativa ssp. japonica
Os08g0307300 Oryza sativa ssp. japonica
Peaxi162Scf00038g01941 Petunia axillaris
Peaxi162Scf00207g01539 Petunia axillaris
Peaxi162Scf00347g00822 Petunia axillaris
Peaxi162Scf01464g00025 Petunia axillaris
PGR049G0011 Punica granatum
PGR119G1428 Punica granatum
PGSC0003DMG400004374 Solanum tuberosum
PGSC0003DMG400014338 Solanum tuberosum
PGSC0003DMG402004894 Solanum tuberosum
Phvul.007G069300 Phaseolus vulgaris
Phvul.010G126000 Phaseolus vulgaris
Potri.001G165600 Populus trichocarpa
Potri.003G069900 Populus trichocarpa
Potri.012G140600 Populus trichocarpa
Pp3c13_8740 Physcomitrium patens
Pp3c3_11610 Physcomitrium patens
PRCOL_00002081 Prasinoderma coloniale
Prupe.2G293800 Prunus persica
Prupe.3G036800 Prunus persica
Psat0s4024g0040 Pisum sativum
Psat0s4657g0040 Pisum sativum
Psat4g167000 Pisum sativum
Psat6g199720 Pisum sativum
PSO170G3446 Papaver somniferum
PSO407G0105 Papaver somniferum
PSO478G3962 Papaver somniferum
PSO675G9173 Papaver somniferum
PSO732G0061 Papaver somniferum
PSO782G1241 Papaver somniferum
QL05p002046 Quercus lobata
QL05p003224 Quercus lobata
QL05p003251 Quercus lobata
QL09p014289 Quercus lobata
QL09p014305 Quercus lobata
QL11p018266 Quercus lobata
RcHm_v2.0_Chr1g0333651 Rosa chinensis
RcHm_v2.0_Chr2g0146571 Rosa chinensis
RcHm_v2.0_Chr5g0053861 Rosa chinensis
Rhsim08G0241600 Rhododendron simsii
Rhsim09G0197600 Rhododendron simsii
Rhsim12G0211700 Rhododendron simsii
Sabra01G0127600 Salix brachista
Sabra03G0041100 Salix brachista
Sabra12G0105500 Salix brachista
SalBow4G1928 Salvia bowleyana
SalBow4G2354 Salvia bowleyana
SalBow6G3844 Salvia bowleyana
SalBow6G4017 Salvia bowleyana
SalBow7G4107 Salvia bowleyana
Sc06g0001720 Simmondsia chinensis
Sc20g0001630 Simmondsia chinensis
Sed0007818 Sechium edule
Sed0011862 Sechium edule
Sed0012701 Sechium edule
SEGI_01821 Sequoiadendron giganteum
SEGI_26612 Sequoiadendron giganteum
SEGI_38037 Sequoiadendron giganteum
SGA_v2.0_scaffold4G02086 Striga asiatica
SGA_v2.0_scaffold68G22846 Striga asiatica
SGA_v2.0_scaffold71G23883 Striga asiatica
SMO169G0139 Selaginella moellendorffii
Solyc03g025860.3 Solanum lycopersicum
Solyc03g122090.3 Solanum lycopersicum
Solyc06g063030.3 Solanum lycopersicum
Solyc12g049420.2 Solanum lycopersicum
Sopen03g004670 Solanum pennellii
Sopen03g040870 Solanum pennellii
Sopen06g022480 Solanum pennellii
Sopen12g023900 Solanum pennellii
Sp1g10510 Schrenkiella parvula
Sp6g14520 Schrenkiella parvula
TAR383G0167 Trochodendron aralioides
TAR626G1742 Trochodendron aralioides
TAR629G2810 Trochodendron aralioides
THA.LOC104811984 Tarenaya hassleriana
THA.LOC104815214 Tarenaya hassleriana
THA.LOC104826526 Tarenaya hassleriana
Thecc.03G175900 Theobroma cacao
Thecc.06G125700 Theobroma cacao
Thhalv10008741m.g Eutrema salsugineum
Thhalv10015442m.g Eutrema salsugineum
Thhalv10023085m.g Eutrema salsugineum
TPR.G14334 Trifolium pratense
TPR.G16679 Trifolium pratense
TWI14G1357 Tripterygium wilfordii
TWI23G0881 Tripterygium wilfordii
TWI59G0665 Tripterygium wilfordii
TWI59G1281 Tripterygium wilfordii
unitig_746.g26753 Utricularia gibba
vmacro09839 Vaccinium macrocarpon
vmacro15061 Vaccinium macrocarpon
vmacro22022 Vaccinium macrocarpon
vmacro22023 Vaccinium macrocarpon
VMungo0331G1402 Vigna mungo
Zm00001eb060410 Zea mays
Zm00001eb119070 Zea mays

User provided reference genes

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