Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02090 Brassica napus
A03p17350 Brassica napus
A04p23800 Brassica napus
A10p24630 Brassica napus
Aa31LG5G5860 Aethionema arabicum
Aa31sc51G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2999 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3662 Anthoceros agrestis
Actinidia09344 Actinidia chinensis
Actinidia10986 Actinidia chinensis
Actinidia24530 Actinidia chinensis
Actinidia24531 Actinidia chinensis
Ah.01g003910 Amaranthus hybridus
Ah.13g076350 Amaranthus hybridus
AL4G26180 Arabidopsis lyrata
AL6G24260 Arabidopsis lyrata
Aqoxy1G00286 Aquilegia oxysepala
Aqoxy1G02238 Aquilegia oxysepala
Aqoxy6G01583 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.105TUT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8CY9VM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ERJJ2A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N92LMW Arachis hypogaea
AT2G31060 Arabidopsis thaliana
AT5G13650 Arabidopsis thaliana
ATR0332G021 Amborella trichopoda
ATR0602G230 Amborella trichopoda
Atru.chr1.1060 Acer truncatum
Atru.chr1.1064 Acer truncatum
Atru.chr6.2843 Acer truncatum
Atru.ctg24.15 Acer truncatum
AUR62024075 Chenopodium quinoa
AUR62024076 Chenopodium quinoa
AUR62024427 Chenopodium quinoa
AUR62026021 Chenopodium quinoa
AUR62035383 Chenopodium quinoa
AUR62035384 Chenopodium quinoa
BcaB01g04069 Brassica carinata
BcaB06g28406 Brassica carinata
BcaB06g28481 Brassica carinata
BcaC01g05982 Brassica carinata
BcaC04g24269 Brassica carinata
BcaNung04195 Brassica carinata
BcaNung05085 Brassica carinata
BolC2t06576H Brassica oleracea
BolC3t14424H Brassica oleracea
BolC3t20052H Brassica oleracea
BolC4t27528H Brassica oleracea
BolC9t59190H Brassica oleracea
BraA02t05181Z Brassica rapa
BraA03t11007Z Brassica rapa
BraA04t17905Z Brassica rapa
BraA10t44526Z Brassica rapa
C02p06340 Brassica napus
C03p20460 Brassica napus
C04p60290 Brassica napus
C09p63440 Brassica napus
CAN.G1543.6 Capsicum annuum
CAN.G233.11 Capsicum annuum
CANSAT64G1412 Cannabis sativa
CANSAT80G2788 Cannabis sativa
CARHR124590 Cardamine hirsuta
CARHR199790 Cardamine hirsuta
Carub.0004s1229 Capsella rubella
Carub.0006s1181 Capsella rubella
Ca_18904_v3 Cicer arietinum L.
Ca_26710_v3 Cicer arietinum L.
CBR_g26230 Chara braunii
CBR_g48662 Chara braunii
Cc05_g07950 Coffea canephora
Cc05_g07960 Coffea canephora
Cc06_g16900 Coffea canephora
CDE05G0993 Ceratophyllum demersum
CDE05G3675 Ceratophyllum demersum
CDE10G0636 Ceratophyllum demersum
CDE10G1130 Ceratophyllum demersum
Cfa014682 Carpinus fangiana
Cfa016841 Carpinus fangiana
Cfa021021 Carpinus fangiana
Ciclev10004468m.g Citrus clementina
Ciclev10014506m.g Citrus clementina
CiPaw.03G183400 Carya illinoinensis
CiPaw.10G032100 Carya illinoinensis
ClCG00G001850 Citrullus lanatus
ClCG02G002240 Citrullus lanatus
ClCG10G016630 Citrullus lanatus
COL.COLO4_22761 Corchorus olitorius
COL.COLO4_22762 Corchorus olitorius
COL.COLO4_28209 Corchorus olitorius
Cpa.g.sc209.1 Carica papaya
Cpa.g.sc50.1 Carica papaya
Cpa.g.sc92.30 Carica papaya
Cre07.g335200 Chlamydomonas reinhardtii
Cre13.g606000 Chlamydomonas reinhardtii
CsaV3_3G039710 Cucumis sativus L.
CsaV3_7G003270 Cucumis sativus L.
CSS0011338 Camellia sinensis var. sinensis
CSS0022484 Camellia sinensis var. sinensis
CSS0029721 Camellia sinensis var. sinensis
CSS0038286 Camellia sinensis var. sinensis
CSS0046530 Camellia sinensis var. sinensis
DCAR_013050 Daucus carota
DCAR_020478 Daucus carota
Dinv02132 Davidia involucrata
Dinv02422 Davidia involucrata
Dinv02423 Davidia involucrata
Dinv19985 Davidia involucrata
Dinv19988 Davidia involucrata
Duzib128G1675 Durio zibethinus
Duzib147G0340 Durio zibethinus
ECA232G3582 Erigeron canadensis
ECA248G3576 Erigeron canadensis
EL10Ac3g07067 Beta vulgaris
EL10Ac9g20850 Beta vulgaris
EL10As6g23635 Beta vulgaris
Eucgr.A01886 Eucalyptus grandis
Eucgr.A02376 Eucalyptus grandis
FAN02G3108 Fragaria x ananassa
FAN02G4412 Fragaria x ananassa
FAN05G1008 Fragaria x ananassa
FAN05G3440 Fragaria x ananassa
FAN05G4931 Fragaria x ananassa
FAN05G5621 Fragaria x ananassa
FAN05G5773 Fragaria x ananassa
FAN09G1847 Fragaria x ananassa
FAN09G4492 Fragaria x ananassa
FAN14G0051 Fragaria x ananassa
FAN14G1816 Fragaria x ananassa
FvH4_6g23530 Fragaria vesca
FvH4_6g26910 Fragaria vesca
Glyma.02G182800 Glycine max
Glyma.06G285200 Glycine max
Glyma.10G103000 Glycine max
Glyma.12G120500 Glycine max
Glyma.19G140900 Glycine max
Gohir.A02G111502 Gossypium hirsutum
Gohir.A05G373200 Gossypium hirsutum
Gohir.D03G067600 Gossypium hirsutum
Gohir.D04G042300 Gossypium hirsutum
Gorai.003G093100 Gossypium raimondii
Gorai.012G047800 Gossypium raimondii
GSVIVG01020652001 Vitis vinifera
GSVIVG01033307001 Vitis vinifera
HanXRQChr05g0146581 Helianthus annuus
HanXRQChr06g0166351 Helianthus annuus
HanXRQChr10g0300081 Helianthus annuus
HanXRQChr17g0554791 Helianthus annuus
Haze_13286 Corylus avellana
Haze_13287 Corylus avellana
Haze_13288 Corylus avellana
Haze_19883 Corylus avellana
Haze_19891 Corylus avellana
Haze_27445 Corylus avellana
Hma1.2p1_0002F.1_g002430 Hydrangea macrophylla
Hma1.2p1_0002F.1_g002450 Hydrangea macrophylla
Hma1.2p1_0696F.1_g204680 Hydrangea macrophylla
Hma1.2p1_0696F.1_g204690 Hydrangea macrophylla
Hma1.2p1_0696F.1_g204700 Hydrangea macrophylla
HPP92_001829 Vanilla planifolia
HPP92_001830 Vanilla planifolia
HPP92_024631 Vanilla planifolia
Hund00987 Selenicereus undatus
Hund24723 Selenicereus undatus
Lalb_Chr01g0005901 Lupinus albus
Lalb_Chr19g0135031 Lupinus albus
Lalb_Chr21g0316451 Lupinus albus
Lj1C661T1 Lonicera japonica
Lj3g0013597 Lotus japonicus
Lj5g0012780 Lotus japonicus
Lj6A138T9 Lonicera japonica
Lj8C106T3 Lonicera japonica
Lju124A37G55 Lonicera japonica
Lsat_1_v5_gn_0_26281 Lactuca sativa
Lsat_1_v5_gn_5_162301 Lactuca sativa
Lsat_1_v5_gn_5_165241 Lactuca sativa
Lsat_1_v5_gn_8_137561 Lactuca sativa
Lsat_1_v5_gn_8_151100 Lactuca sativa
Lsat_1_v5_gn_9_27161 Lactuca sativa
Manes.08G049400 Manihot esculenta
Manes.13G140000 Manihot esculenta
Mapoly0004s0256 Marchantia polymorpha
Mapoly0075s0043 Marchantia polymorpha
MBI04_g36082_MAGBIO Magnolia biondii
MBI06_g34197_MAGBIO Magnolia biondii
MCO16G206 Micromonas commoda
MCO16G490 Micromonas commoda
MD05G1202600 Malus domestica
MD07G1028700 Malus domestica
MD07G1028800 Malus domestica
MD09G1241200 Malus domestica
MD12G1072500 Malus domestica
MD14G1069900 Malus domestica
MD17G1234000 Malus domestica
Medtr1g052535 Medicago truncatula
Medtr4g079360 Medicago truncatula
MELO3C009713.2 Cucumis melo
MELO3C018848.2 Cucumis melo
MELO3C034978.2 Cucumis melo
Migut.H02161 Erythranthe guttata
Migut.J01770 Erythranthe guttata
MSTRG.14318 Avicennia marina
Nitab4.5_0001907g0030 Nicotiana tabacum
Nitab4.5_0002629g0050 Nicotiana tabacum
Nitab4.5_0002649g0060 Nicotiana tabacum
Nitab4.5_0006973g0050 Nicotiana tabacum
Nn1g06356 Nelumbo nucifera
Nn2g15345 Nelumbo nucifera
Oeu064837.1 Olea europaea
Os01g0752700 Oryza sativa ssp. japonica
Os02g0285800 Oryza sativa ssp. japonica
Peaxi162Scf00189g00130 Petunia axillaris
Peaxi162Scf00493g00318 Petunia axillaris
PGR004G1010 Punica granatum
PGR042G1338 Punica granatum
PGSC0003DMG400009402 Solanum tuberosum
Phvul.007G253400 Phaseolus vulgaris
Phvul.011G116300 Phaseolus vulgaris
Potri.006G053000 Populus trichocarpa
Potri.013G123700 Populus trichocarpa
Pp3c16_24460 Physcomitrium patens
Pp3c21_14460 Physcomitrium patens
Pp3c25_15260 Physcomitrium patens
PRCOL_00005040 Prasinoderma coloniale
Prupe.3G126400 Prunus persica
Prupe.3G126600 Prunus persica
Prupe.7G064400 Prunus persica
Psat6g127960 Pisum sativum
PSO063G7058 Papaver somniferum
PSO339G3962 Papaver somniferum
PSO384G0972 Papaver somniferum
PSO541G5689 Papaver somniferum
PSO675G3756 Papaver somniferum
QL07p021004 Quercus lobata
QL07p048789 Quercus lobata
QL08p040922 Quercus lobata
RcHm_v2.0_Chr2g0128661 Rosa chinensis
RcHm_v2.0_Chr3g0481531 Rosa chinensis
Rhsim03G0018300 Rhododendron simsii
Rhsim04G0072400 Rhododendron simsii
Sabra06G0037400 Salix brachista
Sabra13G0102700 Salix brachista
SalBow6G0967 Salvia bowleyana
SalBow7G3750 Salvia bowleyana
SalBow7G4511 Salvia bowleyana
Sc13g0001860 Simmondsia chinensis
Sc21g0003560 Simmondsia chinensis
Sed0003615 Sechium edule
Sed0021656 Sechium edule
Sed0027113 Sechium edule
SEGI_23407 Sequoiadendron giganteum
SEGI_25507 Sequoiadendron giganteum
SEGI_26993 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30429 Striga asiatica
SGA_v2.0_scaffold109G31124 Striga asiatica
SHI10499 Sapria himalayana
SHI10500 Sapria himalayana
SMO118G0291 Selaginella moellendorffii
SMO228G0089 Selaginella moellendorffii
Solyc03g058190.3 Solanum lycopersicum
Solyc07g053470.4 Solanum lycopersicum
Sopen03g011790 Solanum pennellii
Sopen07g027430 Solanum pennellii
Sp4g13530 Schrenkiella parvula
Sp6g30370 Schrenkiella parvula
TAR626G0705 Trochodendron aralioides
TAR633G2547 Trochodendron aralioides
THA.LOC104800851 Tarenaya hassleriana
THA.LOC104809892 Tarenaya hassleriana
Thecc.01G240200 Theobroma cacao
Thecc.05G159000 Theobroma cacao
Thhalv10012883m.g Eutrema salsugineum
Thhalv10016352m.g Eutrema salsugineum
TPR.G11264 Trifolium pratense
TPR.G11272 Trifolium pratense
TPR.G21389 Trifolium pratense
TPR.G21409 Trifolium pratense
TPR.G21410 Trifolium pratense
TPR.G29325 Trifolium pratense
TPR.G29378 Trifolium pratense
TPR.G29379 Trifolium pratense
TPR.G659 Trifolium pratense
TWI23G1320 Tripterygium wilfordii
TWI53G1546 Tripterygium wilfordii
TWI59G1076 Tripterygium wilfordii
unitig_62.g23162 Utricularia gibba
unitig_62.g23163 Utricularia gibba
unitig_8.g4574 Utricularia gibba
vmacro09236 Vaccinium macrocarpon
vmacro22362 Vaccinium macrocarpon
VMungo0720G2980 Vigna mungo
VMungo1127G2025 Vigna mungo
Zm00001eb153490 Zea mays
Zm00001eb236900 Zea mays

User provided reference genes

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