Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p35420 Brassica napus
A02p43720 Brassica napus
A06p41220 Brassica napus
A07p20420 Brassica napus
A09p03380 Brassica napus
Aa31LG1G16800 Aethionema arabicum
Aa31LG2G5420 Aethionema arabicum
Aa31LG9G970 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2699 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3907 Anthoceros agrestis
Actinidia05951 Actinidia chinensis
Actinidia36151 Actinidia chinensis
Ah.03g143480 Amaranthus hybridus
AL455U10030 Arabidopsis lyrata
AL5G16710 Arabidopsis lyrata
AL7G49090 Arabidopsis lyrata
AL8G42670 Arabidopsis lyrata
Aqoxy3G01308 Aquilegia oxysepala
Aqoxy6G01490 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.18R6S7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EL261C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L3RJRN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MZXR1C Arachis hypogaea
AT3G27380 Arabidopsis thaliana
AT5G40650 Arabidopsis thaliana
AT5G65165 Arabidopsis thaliana
ATR0564G176 Amborella trichopoda
ATR0564G401 Amborella trichopoda
ATR0824G060 Amborella trichopoda
Atru.chr4.103 Acer truncatum
Atru.chr6.2471 Acer truncatum
AUR62002018 Chenopodium quinoa
AUR62003783 Chenopodium quinoa
AUR62025071 Chenopodium quinoa
AUR62037146 Chenopodium quinoa
BcaB04g19435 Brassica carinata
BcaB07g29781 Brassica carinata
BcaB07g30165 Brassica carinata
BcaC03g18310 Brassica carinata
BcaC04g23905 Brassica carinata
BcaC06g33825 Brassica carinata
BcaC08g44473 Brassica carinata
BcaNung05650 Brassica carinata
BcaNung05651 Brassica carinata
BcaNung06207 Brassica carinata
BcaNung06208 Brassica carinata
BcaNung06209 Brassica carinata
BcaNung06210 Brassica carinata
BolC2t11476H Brassica oleracea
BolC2t12453H Brassica oleracea
BolC6t37125H Brassica oleracea
BolC7t44162H Brassica oleracea
BolC9t53279H Brassica oleracea
BraA02t08543Z Brassica rapa
BraA02t09296Z Brassica rapa
BraA06t27046Z Brassica rapa
BraA07t29739Z Brassica rapa
BraA09t35977Z Brassica rapa
C02p54130 Brassica napus
C02p63860 Brassica napus
C06p19310 Brassica napus
C07p36440 Brassica napus
C09p03600 Brassica napus
CAN.G1075.8 Capsicum annuum
CAN.G298.15 Capsicum annuum
CAN.G473.47 Capsicum annuum
CAN.G507.12 Capsicum annuum
CAN.G733.2 Capsicum annuum
CANSAT01G0194 Cannabis sativa
CANSAT64G2483 Cannabis sativa
CARHR148700 Cardamine hirsuta
CARHR261300 Cardamine hirsuta
CARHR279080 Cardamine hirsuta
Carub.0005s0569 Capsella rubella
Carub.0007s3483 Capsella rubella
Carub.0008s2601 Capsella rubella
Ca_03860_v3 Cicer arietinum L.
Cc06_g20970 Coffea canephora
Cc07_g20970 Coffea canephora
CDE05G2785 Ceratophyllum demersum
Cfa002680 Carpinus fangiana
Cfa007300 Carpinus fangiana
Cfa026859 Carpinus fangiana
Ciclev10016181m.g Citrus clementina
Ciclev10027338m.g Citrus clementina
CiPaw.03G048800 Carya illinoinensis
CiPaw.04G032100 Carya illinoinensis
CiPaw.04G098400 Carya illinoinensis
ClCG05G013010 Citrullus lanatus
ClCG07G009520 Citrullus lanatus
COL.COLO4_09947 Corchorus olitorius
COL.COLO4_29241 Corchorus olitorius
COL.COLO4_37626 Corchorus olitorius
Cpa.g.sc130.56 Carica papaya
Cpa.g.sc283.8 Carica papaya
Cre06.g264200 Chlamydomonas reinhardtii
CsaV3_3G027530 Cucumis sativus L.
CsaV3_4G004770 Cucumis sativus L.
CSS0006177 Camellia sinensis var. sinensis
CSS0012823 Camellia sinensis var. sinensis
CSS0016509 Camellia sinensis var. sinensis
CSS0025328 Camellia sinensis var. sinensis
DCAR_011283 Daucus carota
DCAR_011510 Daucus carota
DCAR_021751 Daucus carota
Dinv16295 Davidia involucrata
Dinv21918 Davidia involucrata
Dinv25705 Davidia involucrata
Duzib147G0730 Durio zibethinus
Duzib264G0940 Durio zibethinus
ECA232G0113 Erigeron canadensis
ECA234G4045 Erigeron canadensis
ECA246G3649 Erigeron canadensis
EL10Ac6g15092 Beta vulgaris
EL10Ac9g20793 Beta vulgaris
Eucgr.H04808 Eucalyptus grandis
Eucgr.J00347 Eucalyptus grandis
Eucgr.J01516 Eucalyptus grandis
FAN02G1702 Fragaria x ananassa
FAN05G0765 Fragaria x ananassa
FAN07G0366 Fragaria x ananassa
FAN07G0560 Fragaria x ananassa
FAN09G0242 Fragaria x ananassa
FAN14G0722 Fragaria x ananassa
FAN17G1145 Fragaria x ananassa
FAN19G2551 Fragaria x ananassa
FAN23G2763 Fragaria x ananassa
FAN23G2874 Fragaria x ananassa
FAN26G2493 Fragaria x ananassa
FAN28G1549 Fragaria x ananassa
FvH4_1g21120 Fragaria vesca
FvH4_6g52280 Fragaria vesca
Glyma.10G134200 Glycine max
Glyma.16G066200 Glycine max
Glyma.19G080600 Glycine max
Gohir.A05G342500 Gossypium hirsutum
Gohir.A07G225100 Gossypium hirsutum
Gohir.A12G091288 Gossypium hirsutum
Gohir.A12G093625 Gossypium hirsutum
Gohir.D04G080480 Gossypium hirsutum
Gohir.D07G232300 Gossypium hirsutum
Gohir.D12G095700 Gossypium hirsutum
Gorai.001G267500 Gossypium raimondii
Gorai.008G104300 Gossypium raimondii
Gorai.012G091400 Gossypium raimondii
GSVIVG01003975001 Vitis vinifera
GSVIVG01005872001 Vitis vinifera
GSVIVG01005873001 Vitis vinifera
HanXRQChr09g0255741 Helianthus annuus
HanXRQChr15g0487121 Helianthus annuus
HanXRQChr16g0527511 Helianthus annuus
Haze_14794 Corylus avellana
Haze_24949 Corylus avellana
Haze_26847 Corylus avellana
Hma1.2p1_0818F.1_g223490 Hydrangea macrophylla
HPP92_007222 Vanilla planifolia
HPP92_016812 Vanilla planifolia
Hund13012 Selenicereus undatus
Lalb_Chr24g0403431 Lupinus albus
Lj1g0000985 Lotus japonicus
Lj1g0008845 Lotus japonicus
Lj1g0023844 Lotus japonicus
Lj4A887G19 Lonicera japonica
Lj4g0000724 Lotus japonicus
Lj7A604G59 Lonicera japonica
Lj7C604T11 Lonicera japonica
Lju41C45G5 Lonicera japonica
Lsat_1_v5_gn_0_30740 Lactuca sativa
Lsat_1_v5_gn_4_184781 Lactuca sativa
Lsat_1_v5_gn_4_23921 Lactuca sativa
Manes.13G091700 Manihot esculenta
Manes.15G154900 Manihot esculenta
Manes.17G108500 Manihot esculenta
Mapoly0091s0036 Marchantia polymorpha
MBI02_g08737_MAGBIO Magnolia biondii
MBI07_g07821_MAGBIO Magnolia biondii
MCO06G039 Micromonas commoda
MD09G1019100 Malus domestica
MD15G1326000 Malus domestica
MD17G1019700 Malus domestica
MD17G1159200 Malus domestica
MD17G1159300 Malus domestica
MD17G1160200 Malus domestica
MD17G1182200 Malus domestica
Medtr0018s0260 Medicago truncatula
Medtr1g492610 Medicago truncatula
MELO3C014824.2 Cucumis melo
MELO3C017585.2 Cucumis melo
MELO3C017586.2 Cucumis melo
Migut.H00043 Erythranthe guttata
Migut.K01430 Erythranthe guttata
Migut.L00112 Erythranthe guttata
MSTRG.15548 Avicennia marina
MSTRG.3273 Avicennia marina
Nitab4.5_0000104g0180 Nicotiana tabacum
Nitab4.5_0000935g0060 Nicotiana tabacum
Nitab4.5_0001031g0210 Nicotiana tabacum
Nitab4.5_0001929g0010 Nicotiana tabacum
Nitab4.5_0002158g0230 Nicotiana tabacum
Nitab4.5_0006554g0050 Nicotiana tabacum
Nitab4.5_0006942g0050 Nicotiana tabacum
Nn1g05327 Nelumbo nucifera
Nn4g24840 Nelumbo nucifera
Oeu013961.2 Olea europaea
Oeu037153.1 Olea europaea
Oeu050444.4 Olea europaea
Oeu054845.1 Olea europaea
Oeu062396.1 Olea europaea
Os08g0120000 Oryza sativa ssp. japonica
Os09g0370300 Oryza sativa ssp. japonica
Peaxi162Scf00420g00234 Petunia axillaris
Peaxi162Scf00571g00015 Petunia axillaris
PGR102G1179 Punica granatum
PGR142G3931 Punica granatum
PGSC0003DMG400012624 Solanum tuberosum
PGSC0003DMG400020612 Solanum tuberosum
PGSC0003DMG400024973 Solanum tuberosum
PGSC0003DMG400036514 Solanum tuberosum
Phvul.008G145726 Phaseolus vulgaris
Potri.001G338400 Populus trichocarpa
Pp3c12_11350 Physcomitrium patens
Pp3c1_3190 Physcomitrium patens
PRCOL_00006893 Prasinoderma coloniale
Prupe.3G297900 Prunus persica
Prupe.6G182900 Prunus persica
Prupe.6G183100 Prunus persica
Psat3g168600 Pisum sativum
PSO478G0553 Papaver somniferum
PSO509G0032 Papaver somniferum
PSO541G1210 Papaver somniferum
PSO781G0040 Papaver somniferum
QL02p073340 Quercus lobata
RcHm_v2.0_Chr2g0114901 Rosa chinensis
RcHm_v2.0_Chr2g0173811 Rosa chinensis
Rhsim07G0241900 Rhododendron simsii
Rhsim08G0046700 Rhododendron simsii
Rhsim10G0160100 Rhododendron simsii
RhsimUnG0150600 Rhododendron simsii
RhsimUnG0236800 Rhododendron simsii
Sabra16G0219100 Salix brachista
SalBow5G0054 Salvia bowleyana
SalBow5G5180 Salvia bowleyana
SalBow7G1758 Salvia bowleyana
Sc03g0002130 Simmondsia chinensis
Sc03g0007140 Simmondsia chinensis
Sed0001228 Sechium edule
Sed0010707 Sechium edule
Sed0027408 Sechium edule
SEGI_07008 Sequoiadendron giganteum
SGA_v2.0_scaffold154G37142 Striga asiatica
SGA_v2.0_scaffold47G17534 Striga asiatica
SGA_v2.0_scaffold47G17772 Striga asiatica
SMO167G0065 Selaginella moellendorffii
SMO201G0193 Selaginella moellendorffii
SMO230G0050 Selaginella moellendorffii
SMO347G0261 Selaginella moellendorffii
SMO347G0363 Selaginella moellendorffii
SMO353G0257 Selaginella moellendorffii
Solyc02g092730.4 Solanum lycopersicum
Solyc02g092740.1 Solanum lycopersicum
Solyc02g093680.3 Solanum lycopersicum
Solyc04g055020.2 Solanum lycopersicum
Solyc04g055030.2 Solanum lycopersicum
Sopen02g037280 Solanum pennellii
Sopen02g038310 Solanum pennellii
Sopen04g024860 Solanum pennellii
Sopen04g024870 Solanum pennellii
Sp2g16570 Schrenkiella parvula
Sp2g28250 Schrenkiella parvula
Sp7g01210 Schrenkiella parvula
TAR381G0080 Trochodendron aralioides
TAR629G1595 Trochodendron aralioides
THA.LOC104805354 Tarenaya hassleriana
THA.LOC104819308 Tarenaya hassleriana
THA.LOC104824570 Tarenaya hassleriana
Thecc.01G103400 Theobroma cacao
Thecc.04G026800 Theobroma cacao
Thhalv10004747m.g Eutrema salsugineum
Thhalv10005495m.g Eutrema salsugineum
Thhalv10027879m.g Eutrema salsugineum
TPR.G1082 Trifolium pratense
TWI36G1614 Tripterygium wilfordii
TWI56G0318 Tripterygium wilfordii
unitig_1.g29342 Utricularia gibba
unitig_744.g24361 Utricularia gibba
unitig_748.g6971 Utricularia gibba
unitig_748.g8656 Utricularia gibba
vmacro12951 Vaccinium macrocarpon
vmacro18308 Vaccinium macrocarpon
VMungo1080G0236 Vigna mungo
Zm00001eb069360 Zea mays
Zm00001eb097190 Zea mays
Zm00001eb100150 Zea mays
Zm00001eb173490 Zea mays
Zm00001eb175570 Zea mays
Zm00001eb261270 Zea mays
Zm00001eb315360 Zea mays
Zm00001eb358070 Zea mays
Zm00001eb375150 Zea mays

User provided reference genes

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