Gene: AT5G40650

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40650
  • Transcript Identifier AT5G40650.1
  • Gene Type Coding gene
  • Location Chr5 : 16281462-16283296 : positive

Gene Family Information

  • ID HOM05D002252
  • #Genes/#Species 299/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40650.1
  • symbol SDH2-2
  • uniprot Q8LB02

Descriptions

  • Description succinate dehydrogenase 2-2
  • Computational description succinate dehydrogenase 2-2 (SDH2-2); CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 2-1 (TAIR:AT3G27380.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0022904
IBA
Gene Ontologyrespiratory electron transport chain1
GO:0006099
IEA
Gene Ontologytricarboxylic acid cycle
GO:0006099
IEA
InterProtricarboxylic acid cycle
GO:0009060
IBA
Gene Ontologyaerobic respiration1
GO:0006121
ISS
Gene Ontologymitochondrial electron transport, succinate to ubiquinone2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity
GO:0009055
ISS
IEA
Gene Ontologyelectron transfer activity2
GO:0009055
IEA
InterProelectron transfer activity
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051537
IEA
GOA Database2 iron, 2 sulfur cluster binding
GO:0051538
IEA
GOA Database3 iron, 4 sulfur cluster binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0008270
IDA
GOA Databasezinc ion binding
GO:0008270
HDA
Gene Ontologyzinc ion binding3
GO:0000104
ISS
Gene Ontologysuccinate dehydrogenase activity2
GO:0008177
IEA
Gene Ontologysuccinate dehydrogenase (ubiquinone) activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA, HDA
ISM, IBA
Gene Ontologymitochondrion1 2 4
GO:0005743
IEA
GOA Databasemitochondrial inner membrane
GO:0009536
HDA
Gene Ontologyplastid5
GO:0045273
IDA
Gene Ontologyrespiratory chain complex II6
GO:0005749
IDA
Gene Ontologymitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)7
GO:0045281
ISS
Gene Ontologysuccinate dehydrogenase complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009051 Alpha-helical ferredoxin
IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain
IPR025192 Succinate dehydogenase/fumarate reductase N-terminal
IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein
IPR036010 2Fe-2S ferredoxin-like superfamily
IPR012675 Beta-grasp domain superfamily
Mapman id Description
2.3.6.1.2 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.iron-sulphur component SDH2