Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p30900 Brassica napus
A03p02440 Brassica napus
A03p43620 Brassica napus
A07p07960 Brassica napus
A08p06720 Brassica napus
A10p30610 Brassica napus
Aa31LG11G6770 Aethionema arabicum
Aa31LG8G11090 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2902 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.2903 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1111 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.362 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.363 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3299 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2876 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.171 Anthoceros agrestis
Actinidia00937 Actinidia chinensis
Actinidia13423 Actinidia chinensis
Actinidia13923 Actinidia chinensis
Actinidia14641 Actinidia chinensis
Ah.14g081380 Amaranthus hybridus
Ah.16g103310 Amaranthus hybridus
AL3G39820 Arabidopsis lyrata
AL4G17820 Arabidopsis lyrata
AL6G15650 Arabidopsis lyrata
Aqoxy4G02625 Aquilegia oxysepala
Aqoxy7G01831 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.JV7TC8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SV3ZRB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XP9K23 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YQ853S Arachis hypogaea
AT3G24350 Arabidopsis thaliana
AT5G05760 Arabidopsis thaliana
ATR0121G009 Amborella trichopoda
ATR0618G234 Amborella trichopoda
Atru.chr12.6_Atru.chr12.7 Acer truncatum
Atru.chr7.1293 Acer truncatum
Atru.chr7.2320 Acer truncatum
AUR62011032 Chenopodium quinoa
AUR62012228 Chenopodium quinoa
AUR62022860 Chenopodium quinoa
AUR62033405 Chenopodium quinoa
AUR62039509 Chenopodium quinoa
BcaB01g05751 Brassica carinata
BcaB01g05963 Brassica carinata
BcaB02g11438 Brassica carinata
BcaB03g14588 Brassica carinata
BcaB04g20390 Brassica carinata
BcaB04g20503 Brassica carinata
BcaB06g26621 Brassica carinata
BcaC01g03317 Brassica carinata
BcaC06g35690 Brassica carinata
BcaC08g42817 Brassica carinata
BcaNung07047 Brassica carinata
BolC1t03880H Brassica oleracea
BolC3t12831H Brassica oleracea
BolC3t17633H Brassica oleracea
BolC7t41669H Brassica oleracea
BraA01t03219Z Brassica rapa
BraA03t09605Z Brassica rapa
BraA03t13499Z Brassica rapa
BraA04t16677Z Brassica rapa
BraA07t28583Z Brassica rapa
BraA08t32687Z Brassica rapa
C01p39300 Brassica napus
C03p02770 Brassica napus
C03p53730 Brassica napus
C06p00290 Brassica napus
C07p12010 Brassica napus
CAN.G21.21 Capsicum annuum
CAN.G248.27 Capsicum annuum
CANSAT25G3278 Cannabis sativa
CANSAT54G1873 Cannabis sativa
CANSAT56G0808 Cannabis sativa
CARHR100450 Cardamine hirsuta
CARHR207510 Cardamine hirsuta
Carub.0003s2469 Capsella rubella
Carub.0006s0466 Capsella rubella
Ca_15693_v3 Cicer arietinum L.
Ca_15694_v3 Cicer arietinum L.
CBR_g58816 Chara braunii
Cc06_g09300 Coffea canephora
Cc06_g09310 Coffea canephora
CDE06G2071 Ceratophyllum demersum
CDE07G1083 Ceratophyllum demersum
Cfa024165 Carpinus fangiana
Ciclev10008805m.g Citrus clementina
Ciclev10008850m.g Citrus clementina
Ciclev10031758m.g Citrus clementina
CiPaw.01G297000 Carya illinoinensis
CiPaw.07G217300 Carya illinoinensis
CiPaw.08G016000 Carya illinoinensis
ClCG07G004070 Citrullus lanatus
ClCG08G012870 Citrullus lanatus
COL.COLO4_25632 Corchorus olitorius
Cpa.g.sc19.208 Carica papaya
Cpa.g.sc23.145 Carica papaya
Cre16.g692050 Chlamydomonas reinhardtii
CsaV3_5G008990 Cucumis sativus L.
CSS0005321 Camellia sinensis var. sinensis
CSS0014891 Camellia sinensis var. sinensis
CSS0015478 Camellia sinensis var. sinensis
CSS0023863 Camellia sinensis var. sinensis
CSS0039849 Camellia sinensis var. sinensis
DCAR_028731 Daucus carota
Dinv13744 Davidia involucrata
Dinv34410 Davidia involucrata
Dinv35878 Davidia involucrata
Dinv36602 Davidia involucrata
Dinv41574 Davidia involucrata
Duzib114G1007 Durio zibethinus
Duzib150G0091 Durio zibethinus
Duzib168G0800 Durio zibethinus
Duzib168G0991 Durio zibethinus
Duzib187G1129 Durio zibethinus
EL10Ac1g02021 Beta vulgaris
EL10Ac2g04806 Beta vulgaris
EL10Ac8g18546 Beta vulgaris
Eucgr.C02861 Eucalyptus grandis
Eucgr.C02862 Eucalyptus grandis
Eucgr.C02867 Eucalyptus grandis
Eucgr.G03043 Eucalyptus grandis
FAN01G0378 Fragaria x ananassa
FAN03G0360 Fragaria x ananassa
FAN06G1269 Fragaria x ananassa
FAN10G0698 Fragaria x ananassa
FAN15G0251 Fragaria x ananassa
FAN20G1565 Fragaria x ananassa
FAN24G3124 Fragaria x ananassa
FAN27G0742 Fragaria x ananassa
FvH4_2g30200 Fragaria vesca
FvH4_7g24180 Fragaria vesca
Glyma.02G255700 Glycine max
Glyma.04G072700 Glycine max
Glyma.04G072800 Glycine max
Glyma.06G073900 Glycine max
Glyma.06G074000 Glycine max
Glyma.U031123 Glycine max
Gohir.A05G011000 Gossypium hirsutum
Gohir.A06G048200 Gossypium hirsutum
Gohir.A10G233800 Gossypium hirsutum
Gohir.A13G203800 Gossypium hirsutum
Gohir.D05G011700 Gossypium hirsutum
Gohir.D06G048200 Gossypium hirsutum
Gohir.D10G246100 Gossypium hirsutum
Gohir.D13G209100 Gossypium hirsutum
Gorai.009G012000 Gossypium raimondii
Gorai.010G054000 Gossypium raimondii
Gorai.011G283800 Gossypium raimondii
Gorai.013G238200 Gossypium raimondii
GSVIVG01015436001 Vitis vinifera
GSVIVG01032856001 Vitis vinifera
GSVIVG01035729001 Vitis vinifera
HanXRQChr03g0062001 Helianthus annuus
HanXRQChr09g0240451 Helianthus annuus
HanXRQChr10g0317401 Helianthus annuus
HanXRQChr12g0370551 Helianthus annuus
Haze_17198 Corylus avellana
Haze_21627 Corylus avellana
Haze_27118 Corylus avellana
Hma1.2p1_0018F.1_g013150 Hydrangea macrophylla
Hma1.2p1_0175F.1_g077320 Hydrangea macrophylla
HPP92_018348 Vanilla planifolia
HPP92_018349 Vanilla planifolia
HPP92_018382 Vanilla planifolia
Hund09179 Selenicereus undatus
Hund13839 Selenicereus undatus
Hund26116 Selenicereus undatus
Lalb_Chr08g0243771 Lupinus albus
Lalb_Chr11g0064001 Lupinus albus
Lalb_Chr17g0346691 Lupinus albus
Lj1g0015322 Lotus japonicus
Lj1g0018321 Lotus japonicus
Lj7C641G12 Lonicera japonica
Lj8A70T41 Lonicera japonica
LjContig00357g0020435 Lotus japonicus
Lsat_1_v5_gn_5_99821 Lactuca sativa
Lsat_1_v5_gn_7_43121 Lactuca sativa
Lsat_1_v5_gn_8_12440 Lactuca sativa
Lsat_1_v5_gn_8_94641 Lactuca sativa
Manes.07G127200 Manihot esculenta
Manes.16G064900 Manihot esculenta
Mapoly0036s0047 Marchantia polymorpha
MBI01_g10037_MAGBIO Magnolia biondii
MBI04_g20760_MAGBIO Magnolia biondii
MBI14_g09424_MAGBIO Magnolia biondii
MBI18_g28884_MAGBIO Magnolia biondii
MBI18_g36458_MAGBIO Magnolia biondii
MCO02G165 Micromonas commoda
MD01G1149000 Malus domestica
MD08G1135700 Malus domestica
MD15G1114700 Malus domestica
MD15G1114800 Malus domestica
MD15G1190200 Malus domestica
Medtr3g108160 Medicago truncatula
Medtr5g093600 Medicago truncatula
MELO3C011211.2 Cucumis melo
MELO3C025172.2 Cucumis melo
Migut.A00270 Erythranthe guttata
Migut.E01503 Erythranthe guttata
Migut.F01414 Erythranthe guttata
MSTRG.14003 Avicennia marina
MSTRG.25877 Avicennia marina
MSTRG.8319 Avicennia marina
Nitab4.5_0000125g0090 Nicotiana tabacum
Nitab4.5_0000802g0170 Nicotiana tabacum
Nitab4.5_0001346g0010 Nicotiana tabacum
Nitab4.5_0011857g0010 Nicotiana tabacum
Nn2g11427 Nelumbo nucifera
Nn2g11829 Nelumbo nucifera
Nn8g39268 Nelumbo nucifera
Nn8g39269 Nelumbo nucifera
Oeu027166.1 Olea europaea
Oeu045174.1 Olea europaea
Os01g0179200 Oryza sativa ssp. japonica
Peaxi162Scf00105g01218 Petunia axillaris
Peaxi162Scf01313g00119 Petunia axillaris
PGR044G1448 Punica granatum
PGSC0003DMG400004557 Solanum tuberosum
PGSC0003DMG400014503 Solanum tuberosum
PGSC0003DMG400018386 Solanum tuberosum
Phvul.008G225400 Phaseolus vulgaris
Phvul.009G098500 Phaseolus vulgaris
Phvul.009G098600 Phaseolus vulgaris
Potri.006G157000 Populus trichocarpa
Potri.010G191100 Populus trichocarpa
Potri.018G072400 Populus trichocarpa
Pp3c13_17240 Physcomitrium patens
Pp3c3_23960 Physcomitrium patens
Prupe.1G466200 Prunus persica
Prupe.2G247700 Prunus persica
Prupe.7G226900 Prunus persica
Psat2g012720 Pisum sativum
Psat5g026920 Pisum sativum
PSO063G6573 Papaver somniferum
PSO339G0485 Papaver somniferum
PSO782G3325 Papaver somniferum
PSO801G0669 Papaver somniferum
QL12p031209 Quercus lobata
RcHm_v2.0_Chr1g0369761 Rosa chinensis
RcHm_v2.0_Chr6g0312681 Rosa chinensis
Rhsim01G0091400 Rhododendron simsii
Rhsim09G0173400 Rhododendron simsii
Sabra06G0123200 Salix brachista
Sabra10G0147100 Salix brachista
Sabra18G0064200 Salix brachista
SalBow4G1136 Salvia bowleyana
SalBow6G5206 Salvia bowleyana
SalBow8G4140 Salvia bowleyana
Sc11g0007210 Simmondsia chinensis
Sc18g0001010 Simmondsia chinensis
Sed0005671 Sechium edule
Sed0013961 Sechium edule
Sed0020602 Sechium edule
Sed0023487 Sechium edule
SEGI_03224 Sequoiadendron giganteum
SEGI_04853 Sequoiadendron giganteum
SEGI_13325 Sequoiadendron giganteum
SEGI_15123 Sequoiadendron giganteum
SEGI_22729 Sequoiadendron giganteum
SEGI_22935 Sequoiadendron giganteum
SGA_v2.0_scaffold163G38094 Striga asiatica
SGA_v2.0_scaffold169G38634 Striga asiatica
SMO203G0172 Selaginella moellendorffii
SMO357G0001 Selaginella moellendorffii
Solyc07g054140.3 Solanum lycopersicum
Solyc08g067910.3 Solanum lycopersicum
Sopen07g028060 Solanum pennellii
Sopen08g021820 Solanum pennellii
Sp3g22160 Schrenkiella parvula
Sp6g37140 Schrenkiella parvula
TAR624G0306 Trochodendron aralioides
TAR626G1176 Trochodendron aralioides
TAR633G1402 Trochodendron aralioides
TAR636G2212 Trochodendron aralioides
THA.LOC104804580 Tarenaya hassleriana
THA.LOC104816556 Tarenaya hassleriana
Thecc.09G115100 Theobroma cacao
Thecc.09G115200 Theobroma cacao
Thecc.10G023000 Theobroma cacao
Thhalv10002594m.g Eutrema salsugineum
Thhalv10014023m.g Eutrema salsugineum
TPR.G12393 Trifolium pratense
TPR.G12410 Trifolium pratense
TPR.G30900 Trifolium pratense
TPR.G33100 Trifolium pratense
TWI09G0841 Tripterygium wilfordii
TWI63G0194 Tripterygium wilfordii
TWI63G1405 Tripterygium wilfordii
unitig_46.g18218 Utricularia gibba
unitig_748.g7499 Utricularia gibba
vmacro05449 Vaccinium macrocarpon
vmacro10059 Vaccinium macrocarpon
vmacro20672 Vaccinium macrocarpon
VMungo0647G0800 Vigna mungo
VMungo1309G1339 Vigna mungo
VMungo1309G3096 Vigna mungo
Zm00001eb122290 Zea mays
Zm00001eb337020 Zea mays

User provided reference genes

Program Settings