Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p44020 Brassica napus
Aa31LG8G11940 Aethionema arabicum
Aa31LG9G4910 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.421 Anthoceros agrestis
Actinidia02329 Actinidia chinensis
Actinidia09472 Actinidia chinensis
Actinidia26875 Actinidia chinensis
Actinidia30059 Actinidia chinensis
Actinidia31462 Actinidia chinensis
Actinidia35853 Actinidia chinensis
AL3G40780 Arabidopsis lyrata
Aqoxy1G04163 Aquilegia oxysepala
Aqoxy2G03899 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.L384WR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P8DCPE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RP0H42 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TEYT15 Arachis hypogaea
AT3G25070 Arabidopsis thaliana
ATR0069G060 Amborella trichopoda
ATR1128G106 Amborella trichopoda
Atru.chr1.2496 Acer truncatum
Atru.chr10.2307 Acer truncatum
Atru.chr4.1607 Acer truncatum
Atru.chr6.1419 Acer truncatum
AUR62018576 Chenopodium quinoa
AUR62020840 Chenopodium quinoa
BcaB06g26730 Brassica carinata
BcaB08g34432 Brassica carinata
BcaC01g03246 Brassica carinata
BcaC06g35778 Brassica carinata
BolC3t17726H Brassica oleracea
BolC7t41569H Brassica oleracea
BraA03t13533Z Brassica rapa
C03p54390 Brassica napus
C07p11000 Brassica napus
CAN.G1186.12 Capsicum annuum
CAN.G5.47 Capsicum annuum
CAN.G767.9 Capsicum annuum
CAN.G874.2 Capsicum annuum
CANSAT01G0795 Cannabis sativa
CANSAT01G1734 Cannabis sativa
CANSAT56G1175 Cannabis sativa
CARHR101410 Cardamine hirsuta
Carub.0003s2542 Capsella rubella
Ca_06555_v3 Cicer arietinum L.
Ca_23229_v3 Cicer arietinum L.
Cc01_g16790 Coffea canephora
Cc03_g08120 Coffea canephora
Cc09_g01050 Coffea canephora
CDE02G1477 Ceratophyllum demersum
CDE02G2744 Ceratophyllum demersum
CDE05G0222 Ceratophyllum demersum
CDE05G1168 Ceratophyllum demersum
CDE06G1222 Ceratophyllum demersum
CDE09G0775 Ceratophyllum demersum
Cfa004376 Carpinus fangiana
Cfa014948 Carpinus fangiana
Ciclev10006122m.g Citrus clementina
Ciclev10006483m.g Citrus clementina
Ciclev10006802m.g Citrus clementina
Ciclev10017621m.g Citrus clementina
Ciclev10021726m.g Citrus clementina
CiPaw.01G049400 Carya illinoinensis
CiPaw.01G118400 Carya illinoinensis
CiPaw.02G022900 Carya illinoinensis
CiPaw.02G065300 Carya illinoinensis
CiPaw.10G076200 Carya illinoinensis
ClCG01G009910 Citrullus lanatus
ClCG05G003210 Citrullus lanatus
ClCG09G008810 Citrullus lanatus
COL.COLO4_15629 Corchorus olitorius
Cpa.g.c44943 Carica papaya
Cpa.g.sc8.126 Carica papaya
Cpa.g.sc8.127 Carica papaya
Cpa.g.sc83.26 Carica papaya
CsaV3_1G045860 Cucumis sativus L.
CsaV3_3G010840 Cucumis sativus L.
CsaV3_7G026140 Cucumis sativus L.
CSS0001825 Camellia sinensis var. sinensis
CSS0016091 Camellia sinensis var. sinensis
CSS0016957 Camellia sinensis var. sinensis
CSS0030985 Camellia sinensis var. sinensis
CSS0037554 Camellia sinensis var. sinensis
DCAR_004726 Daucus carota
DCAR_004869 Daucus carota
DCAR_012662 Daucus carota
DCAR_018639 Daucus carota
DCAR_026635 Daucus carota
Dinv07382 Davidia involucrata
Dinv12658 Davidia involucrata
Dinv13953 Davidia involucrata
Dinv19181 Davidia involucrata
Dinv27213 Davidia involucrata
Dinv38201 Davidia involucrata
Duzib133G1090 Durio zibethinus
Duzib138G0625 Durio zibethinus
Duzib192G0729 Durio zibethinus
Duzib211G0360 Durio zibethinus
Duzib235G0519 Durio zibethinus
ECA247G1857 Erigeron canadensis
EL10Ac3g07473 Beta vulgaris
Eucgr.D01380 Eucalyptus grandis
Eucgr.H00779 Eucalyptus grandis
Eucgr.H02736 Eucalyptus grandis
Eucgr.K02142 Eucalyptus grandis
FAN06G1532 Fragaria x ananassa
FAN10G1903 Fragaria x ananassa
FAN15G3260 Fragaria x ananassa
FAN24G2024 Fragaria x ananassa
FAN25G0887 Fragaria x ananassa
FAN27G2350 Fragaria x ananassa
FvH4_2g18650 Fragaria vesca
FvH4_3g01180 Fragaria vesca
FvH4_7g07170 Fragaria vesca
Glyma.03G084000 Glycine max
Glyma.07G264500 Glycine max
Glyma.08G349500 Glycine max
Glyma.09G008700 Glycine max
Glyma.16G090700 Glycine max
Glyma.17G009600 Glycine max
Glyma.18G166800 Glycine max
Gohir.A06G152300 Gossypium hirsutum
Gohir.A06G206201 Gossypium hirsutum
Gohir.A07G199700 Gossypium hirsutum
Gohir.A08G195300 Gossypium hirsutum
Gohir.A10G010350 Gossypium hirsutum
Gohir.D06G158600 Gossypium hirsutum
Gohir.D06G215450 Gossypium hirsutum
Gohir.D07G206100 Gossypium hirsutum
Gohir.D08G212670 Gossypium hirsutum
Gorai.001G232400 Gossypium raimondii
Gorai.004G226600 Gossypium raimondii
Gorai.010G185300 Gossypium raimondii
Gorai.010G250900 Gossypium raimondii
Gorai.011G011000 Gossypium raimondii
GSVIVG01004747001 Vitis vinifera
GSVIVG01006684001 Vitis vinifera
GSVIVG01007242001 Vitis vinifera
GSVIVG01020994001 Vitis vinifera
HanXRQChr02g0059051 Helianthus annuus
HanXRQChr07g0189521 Helianthus annuus
HanXRQChr10g0279471 Helianthus annuus
HanXRQChr16g0498991 Helianthus annuus
HanXRQChr16g0516831 Helianthus annuus
Haze_06894 Corylus avellana
Haze_11636 Corylus avellana
Haze_15037 Corylus avellana
Hma1.2p1_0149F.1_g066350 Hydrangea macrophylla
HPP92_000208 Vanilla planifolia
HPP92_001411 Vanilla planifolia
HPP92_001418 Vanilla planifolia
HPP92_008217 Vanilla planifolia
HPP92_011652 Vanilla planifolia
HPP92_011722 Vanilla planifolia
HPP92_013623 Vanilla planifolia
HPP92_020221 Vanilla planifolia
Hund19000 Selenicereus undatus
Lalb_Chr01g0022231 Lupinus albus
Lalb_Chr03g0041531 Lupinus albus
Lalb_Chr12g0209931 Lupinus albus
Lalb_Chr19g0125811 Lupinus albus
Lj2A1127T51 Lonicera japonica
Lj3g0021651 Lotus japonicus
Lj4g0018163 Lotus japonicus
Lj6A454G40 Lonicera japonica
Lj6g0027043 Lotus japonicus
Lsat_1_v5_gn_2_46760 Lactuca sativa
Lsat_1_v5_gn_4_62941 Lactuca sativa
Lsat_1_v5_gn_6_60701 Lactuca sativa
Lsat_1_v5_gn_9_15261 Lactuca sativa
Manes.11G000100 Manihot esculenta
Manes.12G046800 Manihot esculenta
Manes.13G048800 Manihot esculenta
Manes.15G055600 Manihot esculenta
MBI11_g07441_MAGBIO Magnolia biondii
MBI19_g29455_MAGBIO Magnolia biondii
MD05G1172400 Malus domestica
MD10G1160600 Malus domestica
Medtr2g025170 Medicago truncatula
Medtr7g056147 Medicago truncatula
Medtr8g012960 Medicago truncatula
MELO3C006302.2 Cucumis melo
MELO3C021057.2 Cucumis melo
MELO3C021706.2 Cucumis melo
Migut.D02499 Erythranthe guttata
Migut.D02500 Erythranthe guttata
Migut.G00732 Erythranthe guttata
Migut.M01348 Erythranthe guttata
Migut.N00628 Erythranthe guttata
MSTRG.17997 Avicennia marina
MSTRG.20966 Avicennia marina
MSTRG.4236 Avicennia marina
MSTRG.9805 Avicennia marina
Nitab4.5_0000045g0460 Nicotiana tabacum
Nitab4.5_0000143g0470 Nicotiana tabacum
Nitab4.5_0000676g0080 Nicotiana tabacum
Nitab4.5_0000850g0150 Nicotiana tabacum
Nitab4.5_0001198g0300 Nicotiana tabacum
Nitab4.5_0003020g0010 Nicotiana tabacum
Nitab4.5_0007437g0020 Nicotiana tabacum
Nitab4.5_0008794g0020 Nicotiana tabacum
Nn1g07944 Nelumbo nucifera
Nn3g20042 Nelumbo nucifera
Oeu002753.1 Olea europaea
Oeu009713.1 Olea europaea
Oeu023100.1 Olea europaea
Oeu025026.1 Olea europaea
Oeu031828.1 Olea europaea
Oeu037768.2 Olea europaea
Oeu049722.1 Olea europaea
Os02g0504700 Oryza sativa ssp. japonica
Os03g0848600 Oryza sativa ssp. japonica
Os04g0379600 Oryza sativa ssp. japonica
Os08g0526400 Oryza sativa ssp. japonica
Peaxi162Scf00238g00037 Petunia axillaris
Peaxi162Scf00517g00623 Petunia axillaris
Peaxi162Scf00558g00012 Petunia axillaris
Peaxi162Scf00652g00120 Petunia axillaris
PGR004G2124 Punica granatum
PGR044G0352 Punica granatum
PGR083G1505 Punica granatum
PGR083G2795 Punica granatum
PGSC0003DMG400004571 Solanum tuberosum
PGSC0003DMG400020099 Solanum tuberosum
PGSC0003DMG400027945 Solanum tuberosum
PGSC0003DMG400036375 Solanum tuberosum
Phvul.006G144600 Phaseolus vulgaris
Phvul.008G130600 Phaseolus vulgaris
Phvul.010G021200 Phaseolus vulgaris
Potri.002G245400 Populus trichocarpa
Potri.004G002500 Populus trichocarpa
Potri.011G022000 Populus trichocarpa
Pp3c14_15740 Physcomitrium patens
Pp3c17_17040 Physcomitrium patens
Pp3c1_23970 Physcomitrium patens
Pp3c2_10900 Physcomitrium patens
Prupe.4G013100 Prunus persica
Prupe.8G199800 Prunus persica
Psat0s3432g0160 Pisum sativum
Psat1g177320 Pisum sativum
Psat3g148160 Pisum sativum
PSO017G2014 Papaver somniferum
PSO017G6178 Papaver somniferum
PSO063G0461 Papaver somniferum
PSO063G5024 Papaver somniferum
PSO170G5184 Papaver somniferum
PSO210G1922 Papaver somniferum
PSO357G0378 Papaver somniferum
PSO832G0516 Papaver somniferum
QL03p008302 Quercus lobata
QL05p069972 Quercus lobata
QL09p051777 Quercus lobata
QL09p052490 Quercus lobata
RcHm_v2.0_Chr6g0284211 Rosa chinensis
Rhsim01G0254100 Rhododendron simsii
Rhsim09G0058700 Rhododendron simsii
Rhsim13G0047200 Rhododendron simsii
Sabra02G0186700 Salix brachista
SalBow8G0144 Salvia bowleyana
SalBow8G1764 Salvia bowleyana
SalBow8G3195 Salvia bowleyana
Sc13g0000290 Simmondsia chinensis
Sc17g0002180 Simmondsia chinensis
Sed0007803 Sechium edule
Sed0008860 Sechium edule
Sed0014975 Sechium edule
Sed0020018 Sechium edule
Sed0022841 Sechium edule
SEGI_28354 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08332 Striga asiatica
SGA_v2.0_scaffold6G03221 Striga asiatica
Solyc06g083390.4 Solanum lycopersicum
Solyc09g059430.3 Solanum lycopersicum
Solyc11g012010.2 Solanum lycopersicum
Solyc12g098440.2 Solanum lycopersicum
Sopen06g034760 Solanum pennellii
Sopen09g022570 Solanum pennellii
Sopen12g033220 Solanum pennellii
Sp3g22670 Schrenkiella parvula
TAR362G1062 Trochodendron aralioides
TAR624G0352 Trochodendron aralioides
TAR629G2023 Trochodendron aralioides
TAR633G2519 Trochodendron aralioides
TAR636G0289 Trochodendron aralioides
THA.LOC104808790 Tarenaya hassleriana
THA.LOC104821655 Tarenaya hassleriana
Thecc.01G221600 Theobroma cacao
Thecc.06G230800 Theobroma cacao
Thhalv10002991m.g Eutrema salsugineum
TPR.G13174 Trifolium pratense
TPR.G17116 Trifolium pratense
TPR.G6437 Trifolium pratense
TWI18G0470 Tripterygium wilfordii
TWI36G0241 Tripterygium wilfordii
TWI63G0207 Tripterygium wilfordii
TWI75G1384 Tripterygium wilfordii
unitig_746.g26591 Utricularia gibba
unitig_899.g15413 Utricularia gibba
vmacro00452 Vaccinium macrocarpon
vmacro02779 Vaccinium macrocarpon
vmacro14741 Vaccinium macrocarpon
VMungo0331G2000 Vigna mungo
VMungo0540G0904 Vigna mungo
VMungo1383G0545 Vigna mungo
Zm00001eb085850 Zea mays
Zm00001eb210800 Zea mays
Zm00001eb420650 Zea mays

User provided reference genes

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