Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002186', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p44020' => 'bna', 'Aa31LG8G11940' => 'aar', 'Aa31LG9G4910' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.421' => 'aag', 'Actinidia02329' => 'ach', 'Actinidia09472' => 'ach', 'Actinidia26875' => 'ach', 'Actinidia30059' => 'ach', 'Actinidia31462' => 'ach', 'Actinidia35853' => 'ach', 'AL3G40780' => 'aly', 'Aqoxy1G04163' => 'aox', 'Aqoxy2G03899' => 'aox', 'arahy.Tifrunner.gnm1.ann1.L384WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8DCPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP0H42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEYT15' => 'arhy', 'AT3G25070' => 'ath', 'ATR0069G060' => 'atr', 'ATR1128G106' => 'atr', 'Atru.chr1.2496' => 'acertr', 'Atru.chr10.2307' => 'acertr', 'Atru.chr4.1607' => 'acertr', 'Atru.chr6.1419' => 'acertr', 'AUR62018576' => 'cqu', 'AUR62020840' => 'cqu', 'BcaB06g26730' => 'bca', 'BcaB08g34432' => 'bca', 'BcaC01g03246' => 'bca', 'BcaC06g35778' => 'bca', 'BolC3t17726H' => 'bol', 'BolC7t41569H' => 'bol', 'BraA03t13533Z' => 'bra', 'C03p54390' => 'bna', 'C07p11000' => 'bna', 'CAN.G1186.12' => 'can', 'CAN.G5.47' => 'can', 'CAN.G767.9' => 'can', 'CAN.G874.2' => 'can', 'CANSAT01G0795' => 'cansat', 'CANSAT01G1734' => 'cansat', 'CANSAT56G1175' => 'cansat', 'CARHR101410' => 'chi', 'Carub.0003s2542' => 'cru', 'Ca_06555_v3' => 'car', 'Ca_23229_v3' => 'car', 'Cc01_g16790' => 'ccan', 'Cc03_g08120' => 'ccan', 'Cc09_g01050' => 'ccan', 'CDE02G1477' => 'cde', 'CDE02G2744' => 'cde', 'CDE05G0222' => 'cde', 'CDE05G1168' => 'cde', 'CDE06G1222' => 'cde', 'CDE09G0775' => 'cde', 'Cfa004376' => 'cfa', 'Cfa014948' => 'cfa', 'Ciclev10006122m.g' => 'ccl', 'Ciclev10006483m.g' => 'ccl', 'Ciclev10006802m.g' => 'ccl', 'Ciclev10017621m.g' => 'ccl', 'Ciclev10021726m.g' => 'ccl', 'CiPaw.01G049400' => 'cil', 'CiPaw.01G118400' => 'cil', 'CiPaw.02G022900' => 'cil', 'CiPaw.02G065300' => 'cil', 'CiPaw.10G076200' => 'cil', 'ClCG01G009910' => 'cla', 'ClCG05G003210' => 'cla', 'ClCG09G008810' => 'cla', 'COL.COLO4_15629' => 'col', 'Cpa.g.c44943' => 'cpa', 'Cpa.g.sc8.126' => 'cpa', 'Cpa.g.sc8.127' => 'cpa', 'Cpa.g.sc83.26' => 'cpa', 'CsaV3_1G045860' => 'csa', 'CsaV3_3G010840' => 'csa', 'CsaV3_7G026140' => 'csa', 'CSS0001825' => 'camsi', 'CSS0016091' => 'camsi', 'CSS0016957' => 'camsi', 'CSS0030985' => 'camsi', 'CSS0037554' => 'camsi', 'DCAR_004726' => 'dca', 'DCAR_004869' => 'dca', 'DCAR_012662' => 'dca', 'DCAR_018639' => 'dca', 'DCAR_026635' => 'dca', 'Dinv07382' => 'din', 'Dinv12658' => 'din', 'Dinv13953' => 'din', 'Dinv19181' => 'din', 'Dinv27213' => 'din', 'Dinv38201' => 'din', 'Duzib133G1090' => 'dzi', 'Duzib138G0625' => 'dzi', 'Duzib192G0729' => 'dzi', 'Duzib211G0360' => 'dzi', 'Duzib235G0519' => 'dzi', 'ECA247G1857' => 'eca', 'EL10Ac3g07473' => 'bvu', 'Eucgr.D01380' => 'egr', 'Eucgr.H00779' => 'egr', 'Eucgr.H02736' => 'egr', 'Eucgr.K02142' => 'egr', 'FAN06G1532' => 'fan', 'FAN10G1903' => 'fan', 'FAN15G3260' => 'fan', 'FAN24G2024' => 'fan', 'FAN25G0887' => 'fan', 'FAN27G2350' => 'fan', 'FvH4_2g18650' => 'fve', 'FvH4_3g01180' => 'fve', 'FvH4_7g07170' => 'fve', 'Glyma.03G084000' => 'gma', 'Glyma.07G264500' => 'gma', 'Glyma.08G349500' => 'gma', 'Glyma.09G008700' => 'gma', 'Glyma.16G090700' => 'gma', 'Glyma.17G009600' => 'gma', 'Glyma.18G166800' => 'gma', 'Gohir.A06G152300' => 'ghi', 'Gohir.A06G206201' => 'ghi', 'Gohir.A07G199700' => 'ghi', 'Gohir.A08G195300' => 'ghi', 'Gohir.A10G010350' => 'ghi', 'Gohir.D06G158600' => 'ghi', 'Gohir.D06G215450' => 'ghi', 'Gohir.D07G206100' => 'ghi', 'Gohir.D08G212670' => 'ghi', 'Gorai.001G232400' => 'gra', 'Gorai.004G226600' => 'gra', 'Gorai.010G185300' => 'gra', 'Gorai.010G250900' => 'gra', 'Gorai.011G011000' => 'gra', 'GSVIVG01004747001' => 'vvi', 'GSVIVG01006684001' => 'vvi', 'GSVIVG01007242001' => 'vvi', 'GSVIVG01020994001' => 'vvi', 'HanXRQChr02g0059051' => 'han', 'HanXRQChr07g0189521' => 'han', 'HanXRQChr10g0279471' => 'han', 'HanXRQChr16g0498991' => 'han', 'HanXRQChr16g0516831' => 'han', 'Haze_06894' => 'cav', 'Haze_11636' => 'cav', 'Haze_15037' => 'cav', 'Hma1.2p1_0149F.1_g066350' => 'hma', 'HPP92_000208' => 'vpl', 'HPP92_001411' => 'vpl', 'HPP92_001418' => 'vpl', 'HPP92_008217' => 'vpl', 'HPP92_011652' => 'vpl', 'HPP92_011722' => 'vpl', 'HPP92_013623' => 'vpl', 'HPP92_020221' => 'vpl', 'Hund19000' => 'sun', 'Lalb_Chr01g0022231' => 'lal', 'Lalb_Chr03g0041531' => 'lal', 'Lalb_Chr12g0209931' => 'lal', 'Lalb_Chr19g0125811' => 'lal', 'Lj2A1127T51' => 'lonja', 'Lj3g0021651' => 'lja', 'Lj4g0018163' => 'lja', 'Lj6A454G40' => 'lonja', 'Lj6g0027043' => 'lja', 'Lsat_1_v5_gn_2_46760' => 'lsa', 'Lsat_1_v5_gn_4_62941' => 'lsa', 'Lsat_1_v5_gn_6_60701' => 'lsa', 'Lsat_1_v5_gn_9_15261' => 'lsa', 'Manes.11G000100' => 'mes', 'Manes.12G046800' => 'mes', 'Manes.13G048800' => 'mes', 'Manes.15G055600' => 'mes', 'MBI11_g07441_MAGBIO' => 'mbi', 'MBI19_g29455_MAGBIO' => 'mbi', 'MD05G1172400' => 'mdo', 'MD10G1160600' => 'mdo', 'Medtr2g025170' => 'mtr', 'Medtr7g056147' => 'mtr', 'Medtr8g012960' => 'mtr', 'MELO3C006302.2' => 'cme', 'MELO3C021057.2' => 'cme', 'MELO3C021706.2' => 'cme', 'Migut.D02499' => 'egut', 'Migut.D02500' => 'egut', 'Migut.G00732' => 'egut', 'Migut.M01348' => 'egut', 'Migut.N00628' => 'egut', 'MSTRG.17997' => 'ama', 'MSTRG.20966' => 'ama', 'MSTRG.4236' => 'ama', 'MSTRG.9805' => 'ama', 'Nitab4.5_0000045g0460' => 'nta', 'Nitab4.5_0000143g0470' => 'nta', 'Nitab4.5_0000676g0080' => 'nta', 'Nitab4.5_0000850g0150' => 'nta', 'Nitab4.5_0001198g0300' => 'nta', 'Nitab4.5_0003020g0010' => 'nta', 'Nitab4.5_0007437g0020' => 'nta', 'Nitab4.5_0008794g0020' => 'nta', 'Nn1g07944' => 'nnu', 'Nn3g20042' => 'nnu', 'Oeu002753.1' => 'oeu', 'Oeu009713.1' => 'oeu', 'Oeu023100.1' => 'oeu', 'Oeu025026.1' => 'oeu', 'Oeu031828.1' => 'oeu', 'Oeu037768.2' => 'oeu', 'Oeu049722.1' => 'oeu', 'Os02g0504700' => 'osa', 'Os03g0848600' => 'osa', 'Os04g0379600' => 'osa', 'Os08g0526400' => 'osa', 'Peaxi162Scf00238g00037' => 'pax', 'Peaxi162Scf00517g00623' => 'pax', 'Peaxi162Scf00558g00012' => 'pax', 'Peaxi162Scf00652g00120' => 'pax', 'PGR004G2124' => 'pgr', 'PGR044G0352' => 'pgr', 'PGR083G1505' => 'pgr', 'PGR083G2795' => 'pgr', 'PGSC0003DMG400004571' => 'stu', 'PGSC0003DMG400020099' => 'stu', 'PGSC0003DMG400027945' => 'stu', 'PGSC0003DMG400036375' => 'stu', 'Phvul.006G144600' => 'pvu', 'Phvul.008G130600' => 'pvu', 'Phvul.010G021200' => 'pvu', 'Potri.002G245400' => 'ptr', 'Potri.004G002500' => 'ptr', 'Potri.011G022000' => 'ptr', 'Pp3c14_15740' => 'ppa', 'Pp3c17_17040' => 'ppa', 'Pp3c1_23970' => 'ppa', 'Pp3c2_10900' => 'ppa', 'Prupe.4G013100' => 'ppe', 'Prupe.8G199800' => 'ppe', 'Psat0s3432g0160' => 'psa', 'Psat1g177320' => 'psa', 'Psat3g148160' => 'psa', 'PSO017G2014' => 'pso', 'PSO017G6178' => 'pso', 'PSO063G0461' => 'pso', 'PSO063G5024' => 'pso', 'PSO170G5184' => 'pso', 'PSO210G1922' => 'pso', 'PSO357G0378' => 'pso', 'PSO832G0516' => 'pso', 'QL03p008302' => 'qlo', 'QL05p069972' => 'qlo', 'QL09p051777' => 'qlo', 'QL09p052490' => 'qlo', 'RcHm_v2.0_Chr6g0284211' => 'rch', 'Rhsim01G0254100' => 'rsi', 'Rhsim09G0058700' => 'rsi', 'Rhsim13G0047200' => 'rsi', 'Sabra02G0186700' => 'sbr', 'SalBow8G0144' => 'sbo', 'SalBow8G1764' => 'sbo', 'SalBow8G3195' => 'sbo', 'Sc13g0000290' => 'sci', 'Sc17g0002180' => 'sci', 'Sed0007803' => 'sed', 'Sed0008860' => 'sed', 'Sed0014975' => 'sed', 'Sed0020018' => 'sed', 'Sed0022841' => 'sed', 'SEGI_28354' => 'sgi', 'SGA_v2.0_scaffold18G08332' => 'sas', 'SGA_v2.0_scaffold6G03221' => 'sas', 'Solyc06g083390.4' => 'sly', 'Solyc09g059430.3' => 'sly', 'Solyc11g012010.2' => 'sly', 'Solyc12g098440.2' => 'sly', 'Sopen06g034760' => 'spe', 'Sopen09g022570' => 'spe', 'Sopen12g033220' => 'spe', 'Sp3g22670' => 'spa', 'TAR362G1062' => 'tar', 'TAR624G0352' => 'tar', 'TAR629G2023' => 'tar', 'TAR633G2519' => 'tar', 'TAR636G0289' => 'tar', 'THA.LOC104808790' => 'tha', 'THA.LOC104821655' => 'tha', 'Thecc.01G221600' => 'tca', 'Thecc.06G230800' => 'tca', 'Thhalv10002991m.g' => 'esa', 'TPR.G13174' => 'tpr', 'TPR.G17116' => 'tpr', 'TPR.G6437' => 'tpr', 'TWI18G0470' => 'twi', 'TWI36G0241' => 'twi', 'TWI63G0207' => 'twi', 'TWI75G1384' => 'twi', 'unitig_746.g26591' => 'ugi', 'unitig_899.g15413' => 'ugi', 'vmacro00452' => 'vma', 'vmacro02779' => 'vma', 'vmacro14741' => 'vma', 'VMungo0331G2000' => 'vmu', 'VMungo0540G0904' => 'vmu', 'VMungo1383G0545' => 'vmu', 'Zm00001eb085850' => 'zma', 'Zm00001eb210800' => 'zma', 'Zm00001eb420650' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002186', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002186' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002186', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002186' ) ), 'genes' => array( 'A03p44020' => 'bna', 'Aa31LG8G11940' => 'aar', 'Aa31LG9G4910' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.421' => 'aag', 'Actinidia02329' => 'ach', 'Actinidia09472' => 'ach', 'Actinidia26875' => 'ach', 'Actinidia30059' => 'ach', 'Actinidia31462' => 'ach', 'Actinidia35853' => 'ach', 'AL3G40780' => 'aly', 'Aqoxy1G04163' => 'aox', 'Aqoxy2G03899' => 'aox', 'arahy.Tifrunner.gnm1.ann1.L384WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8DCPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP0H42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEYT15' => 'arhy', 'AT3G25070' => 'ath', 'ATR0069G060' => 'atr', 'ATR1128G106' => 'atr', 'Atru.chr1.2496' => 'acertr', 'Atru.chr10.2307' => 'acertr', 'Atru.chr4.1607' => 'acertr', 'Atru.chr6.1419' => 'acertr', 'AUR62018576' => 'cqu', 'AUR62020840' => 'cqu', 'BcaB06g26730' => 'bca', 'BcaB08g34432' => 'bca', 'BcaC01g03246' => 'bca', 'BcaC06g35778' => 'bca', 'BolC3t17726H' => 'bol', 'BolC7t41569H' => 'bol', 'BraA03t13533Z' => 'bra', 'C03p54390' => 'bna', 'C07p11000' => 'bna', 'CAN.G1186.12' => 'can', 'CAN.G5.47' => 'can', 'CAN.G767.9' => 'can', 'CAN.G874.2' => 'can', 'CANSAT01G0795' => 'cansat', 'CANSAT01G1734' => 'cansat', 'CANSAT56G1175' => 'cansat', 'CARHR101410' => 'chi', 'Carub.0003s2542' => 'cru', 'Ca_06555_v3' => 'car', 'Ca_23229_v3' => 'car', 'Cc01_g16790' => 'ccan', 'Cc03_g08120' => 'ccan', 'Cc09_g01050' => 'ccan', 'CDE02G1477' => 'cde', 'CDE02G2744' => 'cde', 'CDE05G0222' => 'cde', 'CDE05G1168' => 'cde', 'CDE06G1222' => 'cde', 'CDE09G0775' => 'cde', 'Cfa004376' => 'cfa', 'Cfa014948' => 'cfa', 'Ciclev10006122m.g' => 'ccl', 'Ciclev10006483m.g' => 'ccl', 'Ciclev10006802m.g' => 'ccl', 'Ciclev10017621m.g' => 'ccl', 'Ciclev10021726m.g' => 'ccl', 'CiPaw.01G049400' => 'cil', 'CiPaw.01G118400' => 'cil', 'CiPaw.02G022900' => 'cil', 'CiPaw.02G065300' => 'cil', 'CiPaw.10G076200' => 'cil', 'ClCG01G009910' => 'cla', 'ClCG05G003210' => 'cla', 'ClCG09G008810' => 'cla', 'COL.COLO4_15629' => 'col', 'Cpa.g.c44943' => 'cpa', 'Cpa.g.sc8.126' => 'cpa', 'Cpa.g.sc8.127' => 'cpa', 'Cpa.g.sc83.26' => 'cpa', 'CsaV3_1G045860' => 'csa', 'CsaV3_3G010840' => 'csa', 'CsaV3_7G026140' => 'csa', 'CSS0001825' => 'camsi', 'CSS0016091' => 'camsi', 'CSS0016957' => 'camsi', 'CSS0030985' => 'camsi', 'CSS0037554' => 'camsi', 'DCAR_004726' => 'dca', 'DCAR_004869' => 'dca', 'DCAR_012662' => 'dca', 'DCAR_018639' => 'dca', 'DCAR_026635' => 'dca', 'Dinv07382' => 'din', 'Dinv12658' => 'din', 'Dinv13953' => 'din', 'Dinv19181' => 'din', 'Dinv27213' => 'din', 'Dinv38201' => 'din', 'Duzib133G1090' => 'dzi', 'Duzib138G0625' => 'dzi', 'Duzib192G0729' => 'dzi', 'Duzib211G0360' => 'dzi', 'Duzib235G0519' => 'dzi', 'ECA247G1857' => 'eca', 'EL10Ac3g07473' => 'bvu', 'Eucgr.D01380' => 'egr', 'Eucgr.H00779' => 'egr', 'Eucgr.H02736' => 'egr', 'Eucgr.K02142' => 'egr', 'FAN06G1532' => 'fan', 'FAN10G1903' => 'fan', 'FAN15G3260' => 'fan', 'FAN24G2024' => 'fan', 'FAN25G0887' => 'fan', 'FAN27G2350' => 'fan', 'FvH4_2g18650' => 'fve', 'FvH4_3g01180' => 'fve', 'FvH4_7g07170' => 'fve', 'Glyma.03G084000' => 'gma', 'Glyma.07G264500' => 'gma', 'Glyma.08G349500' => 'gma', 'Glyma.09G008700' => 'gma', 'Glyma.16G090700' => 'gma', 'Glyma.17G009600' => 'gma', 'Glyma.18G166800' => 'gma', 'Gohir.A06G152300' => 'ghi', 'Gohir.A06G206201' => 'ghi', 'Gohir.A07G199700' => 'ghi', 'Gohir.A08G195300' => 'ghi', 'Gohir.A10G010350' => 'ghi', 'Gohir.D06G158600' => 'ghi', 'Gohir.D06G215450' => 'ghi', 'Gohir.D07G206100' => 'ghi', 'Gohir.D08G212670' => 'ghi', 'Gorai.001G232400' => 'gra', 'Gorai.004G226600' => 'gra', 'Gorai.010G185300' => 'gra', 'Gorai.010G250900' => 'gra', 'Gorai.011G011000' => 'gra', 'GSVIVG01004747001' => 'vvi', 'GSVIVG01006684001' => 'vvi', 'GSVIVG01007242001' => 'vvi', 'GSVIVG01020994001' => 'vvi', 'HanXRQChr02g0059051' => 'han', 'HanXRQChr07g0189521' => 'han', 'HanXRQChr10g0279471' => 'han', 'HanXRQChr16g0498991' => 'han', 'HanXRQChr16g0516831' => 'han', 'Haze_06894' => 'cav', 'Haze_11636' => 'cav', 'Haze_15037' => 'cav', 'Hma1.2p1_0149F.1_g066350' => 'hma', 'HPP92_000208' => 'vpl', 'HPP92_001411' => 'vpl', 'HPP92_001418' => 'vpl', 'HPP92_008217' => 'vpl', 'HPP92_011652' => 'vpl', 'HPP92_011722' => 'vpl', 'HPP92_013623' => 'vpl', 'HPP92_020221' => 'vpl', 'Hund19000' => 'sun', 'Lalb_Chr01g0022231' => 'lal', 'Lalb_Chr03g0041531' => 'lal', 'Lalb_Chr12g0209931' => 'lal', 'Lalb_Chr19g0125811' => 'lal', 'Lj2A1127T51' => 'lonja', 'Lj3g0021651' => 'lja', 'Lj4g0018163' => 'lja', 'Lj6A454G40' => 'lonja', 'Lj6g0027043' => 'lja', 'Lsat_1_v5_gn_2_46760' => 'lsa', 'Lsat_1_v5_gn_4_62941' => 'lsa', 'Lsat_1_v5_gn_6_60701' => 'lsa', 'Lsat_1_v5_gn_9_15261' => 'lsa', 'Manes.11G000100' => 'mes', 'Manes.12G046800' => 'mes', 'Manes.13G048800' => 'mes', 'Manes.15G055600' => 'mes', 'MBI11_g07441_MAGBIO' => 'mbi', 'MBI19_g29455_MAGBIO' => 'mbi', 'MD05G1172400' => 'mdo', 'MD10G1160600' => 'mdo', 'Medtr2g025170' => 'mtr', 'Medtr7g056147' => 'mtr', 'Medtr8g012960' => 'mtr', 'MELO3C006302.2' => 'cme', 'MELO3C021057.2' => 'cme', 'MELO3C021706.2' => 'cme', 'Migut.D02499' => 'egut', 'Migut.D02500' => 'egut', 'Migut.G00732' => 'egut', 'Migut.M01348' => 'egut', 'Migut.N00628' => 'egut', 'MSTRG.17997' => 'ama', 'MSTRG.20966' => 'ama', 'MSTRG.4236' => 'ama', 'MSTRG.9805' => 'ama', 'Nitab4.5_0000045g0460' => 'nta', 'Nitab4.5_0000143g0470' => 'nta', 'Nitab4.5_0000676g0080' => 'nta', 'Nitab4.5_0000850g0150' => 'nta', 'Nitab4.5_0001198g0300' => 'nta', 'Nitab4.5_0003020g0010' => 'nta', 'Nitab4.5_0007437g0020' => 'nta', 'Nitab4.5_0008794g0020' => 'nta', 'Nn1g07944' => 'nnu', 'Nn3g20042' => 'nnu', 'Oeu002753.1' => 'oeu', 'Oeu009713.1' => 'oeu', 'Oeu023100.1' => 'oeu', 'Oeu025026.1' => 'oeu', 'Oeu031828.1' => 'oeu', 'Oeu037768.2' => 'oeu', 'Oeu049722.1' => 'oeu', 'Os02g0504700' => 'osa', 'Os03g0848600' => 'osa', 'Os04g0379600' => 'osa', 'Os08g0526400' => 'osa', 'Peaxi162Scf00238g00037' => 'pax', 'Peaxi162Scf00517g00623' => 'pax', 'Peaxi162Scf00558g00012' => 'pax', 'Peaxi162Scf00652g00120' => 'pax', 'PGR004G2124' => 'pgr', 'PGR044G0352' => 'pgr', 'PGR083G1505' => 'pgr', 'PGR083G2795' => 'pgr', 'PGSC0003DMG400004571' => 'stu', 'PGSC0003DMG400020099' => 'stu', 'PGSC0003DMG400027945' => 'stu', 'PGSC0003DMG400036375' => 'stu', 'Phvul.006G144600' => 'pvu', 'Phvul.008G130600' => 'pvu', 'Phvul.010G021200' => 'pvu', 'Potri.002G245400' => 'ptr', 'Potri.004G002500' => 'ptr', 'Potri.011G022000' => 'ptr', 'Pp3c14_15740' => 'ppa', 'Pp3c17_17040' => 'ppa', 'Pp3c1_23970' => 'ppa', 'Pp3c2_10900' => 'ppa', 'Prupe.4G013100' => 'ppe', 'Prupe.8G199800' => 'ppe', 'Psat0s3432g0160' => 'psa', 'Psat1g177320' => 'psa', 'Psat3g148160' => 'psa', 'PSO017G2014' => 'pso', 'PSO017G6178' => 'pso', 'PSO063G0461' => 'pso', 'PSO063G5024' => 'pso', 'PSO170G5184' => 'pso', 'PSO210G1922' => 'pso', 'PSO357G0378' => 'pso', 'PSO832G0516' => 'pso', 'QL03p008302' => 'qlo', 'QL05p069972' => 'qlo', 'QL09p051777' => 'qlo', 'QL09p052490' => 'qlo', 'RcHm_v2.0_Chr6g0284211' => 'rch', 'Rhsim01G0254100' => 'rsi', 'Rhsim09G0058700' => 'rsi', 'Rhsim13G0047200' => 'rsi', 'Sabra02G0186700' => 'sbr', 'SalBow8G0144' => 'sbo', 'SalBow8G1764' => 'sbo', 'SalBow8G3195' => 'sbo', 'Sc13g0000290' => 'sci', 'Sc17g0002180' => 'sci', 'Sed0007803' => 'sed', 'Sed0008860' => 'sed', 'Sed0014975' => 'sed', 'Sed0020018' => 'sed', 'Sed0022841' => 'sed', 'SEGI_28354' => 'sgi', 'SGA_v2.0_scaffold18G08332' => 'sas', 'SGA_v2.0_scaffold6G03221' => 'sas', 'Solyc06g083390.4' => 'sly', 'Solyc09g059430.3' => 'sly', 'Solyc11g012010.2' => 'sly', 'Solyc12g098440.2' => 'sly', 'Sopen06g034760' => 'spe', 'Sopen09g022570' => 'spe', 'Sopen12g033220' => 'spe', 'Sp3g22670' => 'spa', 'TAR362G1062' => 'tar', 'TAR624G0352' => 'tar', 'TAR629G2023' => 'tar', 'TAR633G2519' => 'tar', 'TAR636G0289' => 'tar', 'THA.LOC104808790' => 'tha', 'THA.LOC104821655' => 'tha', 'Thecc.01G221600' => 'tca', 'Thecc.06G230800' => 'tca', 'Thhalv10002991m.g' => 'esa', 'TPR.G13174' => 'tpr', 'TPR.G17116' => 'tpr', 'TPR.G6437' => 'tpr', 'TWI18G0470' => 'twi', 'TWI36G0241' => 'twi', 'TWI63G0207' => 'twi', 'TWI75G1384' => 'twi', 'unitig_746.g26591' => 'ugi', 'unitig_899.g15413' => 'ugi', 'vmacro00452' => 'vma', 'vmacro02779' => 'vma', 'vmacro14741' => 'vma', 'VMungo0331G2000' => 'vmu', 'VMungo0540G0904' => 'vmu', 'VMungo1383G0545' => 'vmu', 'Zm00001eb085850' => 'zma', 'Zm00001eb210800' => 'zma', 'Zm00001eb420650' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002186' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002186' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002186' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002186' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002186', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p44020' => 'bna', 'Aa31LG8G11940' => 'aar', 'Aa31LG9G4910' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.421' => 'aag', 'Actinidia02329' => 'ach', 'Actinidia09472' => 'ach', 'Actinidia26875' => 'ach', 'Actinidia30059' => 'ach', 'Actinidia31462' => 'ach', 'Actinidia35853' => 'ach', 'AL3G40780' => 'aly', 'Aqoxy1G04163' => 'aox', 'Aqoxy2G03899' => 'aox', 'arahy.Tifrunner.gnm1.ann1.L384WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8DCPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP0H42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEYT15' => 'arhy', 'AT3G25070' => 'ath', 'ATR0069G060' => 'atr', 'ATR1128G106' => 'atr', 'Atru.chr1.2496' => 'acertr', 'Atru.chr10.2307' => 'acertr', 'Atru.chr4.1607' => 'acertr', 'Atru.chr6.1419' => 'acertr', 'AUR62018576' => 'cqu', 'AUR62020840' => 'cqu', 'BcaB06g26730' => 'bca', 'BcaB08g34432' => 'bca', 'BcaC01g03246' => 'bca', 'BcaC06g35778' => 'bca', 'BolC3t17726H' => 'bol', 'BolC7t41569H' => 'bol', 'BraA03t13533Z' => 'bra', 'C03p54390' => 'bna', 'C07p11000' => 'bna', 'CAN.G1186.12' => 'can', 'CAN.G5.47' => 'can', 'CAN.G767.9' => 'can', 'CAN.G874.2' => 'can', 'CANSAT01G0795' => 'cansat', 'CANSAT01G1734' => 'cansat', 'CANSAT56G1175' => 'cansat', 'CARHR101410' => 'chi', 'Carub.0003s2542' => 'cru', 'Ca_06555_v3' => 'car', 'Ca_23229_v3' => 'car', 'Cc01_g16790' => 'ccan', 'Cc03_g08120' => 'ccan', 'Cc09_g01050' => 'ccan', 'CDE02G1477' => 'cde', 'CDE02G2744' => 'cde', 'CDE05G0222' => 'cde', 'CDE05G1168' => 'cde', 'CDE06G1222' => 'cde', 'CDE09G0775' => 'cde', 'Cfa004376' => 'cfa', 'Cfa014948' => 'cfa', 'Ciclev10006122m.g' => 'ccl', 'Ciclev10006483m.g' => 'ccl', 'Ciclev10006802m.g' => 'ccl', 'Ciclev10017621m.g' => 'ccl', 'Ciclev10021726m.g' => 'ccl', 'CiPaw.01G049400' => 'cil', 'CiPaw.01G118400' => 'cil', 'CiPaw.02G022900' => 'cil', 'CiPaw.02G065300' => 'cil', 'CiPaw.10G076200' => 'cil', 'ClCG01G009910' => 'cla', 'ClCG05G003210' => 'cla', 'ClCG09G008810' => 'cla', 'COL.COLO4_15629' => 'col', 'Cpa.g.c44943' => 'cpa', 'Cpa.g.sc8.126' => 'cpa', 'Cpa.g.sc8.127' => 'cpa', 'Cpa.g.sc83.26' => 'cpa', 'CsaV3_1G045860' => 'csa', 'CsaV3_3G010840' => 'csa', 'CsaV3_7G026140' => 'csa', 'CSS0001825' => 'camsi', 'CSS0016091' => 'camsi', 'CSS0016957' => 'camsi', 'CSS0030985' => 'camsi', 'CSS0037554' => 'camsi', 'DCAR_004726' => 'dca', 'DCAR_004869' => 'dca', 'DCAR_012662' => 'dca', 'DCAR_018639' => 'dca', 'DCAR_026635' => 'dca', 'Dinv07382' => 'din', 'Dinv12658' => 'din', 'Dinv13953' => 'din', 'Dinv19181' => 'din', 'Dinv27213' => 'din', 'Dinv38201' => 'din', 'Duzib133G1090' => 'dzi', 'Duzib138G0625' => 'dzi', 'Duzib192G0729' => 'dzi', 'Duzib211G0360' => 'dzi', 'Duzib235G0519' => 'dzi', 'ECA247G1857' => 'eca', 'EL10Ac3g07473' => 'bvu', 'Eucgr.D01380' => 'egr', 'Eucgr.H00779' => 'egr', 'Eucgr.H02736' => 'egr', 'Eucgr.K02142' => 'egr', 'FAN06G1532' => 'fan', 'FAN10G1903' => 'fan', 'FAN15G3260' => 'fan', 'FAN24G2024' => 'fan', 'FAN25G0887' => 'fan', 'FAN27G2350' => 'fan', 'FvH4_2g18650' => 'fve', 'FvH4_3g01180' => 'fve', 'FvH4_7g07170' => 'fve', 'Glyma.03G084000' => 'gma', 'Glyma.07G264500' => 'gma', 'Glyma.08G349500' => 'gma', 'Glyma.09G008700' => 'gma', 'Glyma.16G090700' => 'gma', 'Glyma.17G009600' => 'gma', 'Glyma.18G166800' => 'gma', 'Gohir.A06G152300' => 'ghi', 'Gohir.A06G206201' => 'ghi', 'Gohir.A07G199700' => 'ghi', 'Gohir.A08G195300' => 'ghi', 'Gohir.A10G010350' => 'ghi', 'Gohir.D06G158600' => 'ghi', 'Gohir.D06G215450' => 'ghi', 'Gohir.D07G206100' => 'ghi', 'Gohir.D08G212670' => 'ghi', 'Gorai.001G232400' => 'gra', 'Gorai.004G226600' => 'gra', 'Gorai.010G185300' => 'gra', 'Gorai.010G250900' => 'gra', 'Gorai.011G011000' => 'gra', 'GSVIVG01004747001' => 'vvi', 'GSVIVG01006684001' => 'vvi', 'GSVIVG01007242001' => 'vvi', 'GSVIVG01020994001' => 'vvi', 'HanXRQChr02g0059051' => 'han', 'HanXRQChr07g0189521' => 'han', 'HanXRQChr10g0279471' => 'han', 'HanXRQChr16g0498991' => 'han', 'HanXRQChr16g0516831' => 'han', 'Haze_06894' => 'cav', 'Haze_11636' => 'cav', 'Haze_15037' => 'cav', 'Hma1.2p1_0149F.1_g066350' => 'hma', 'HPP92_000208' => 'vpl', 'HPP92_001411' => 'vpl', 'HPP92_001418' => 'vpl', 'HPP92_008217' => 'vpl', 'HPP92_011652' => 'vpl', 'HPP92_011722' => 'vpl', 'HPP92_013623' => 'vpl', 'HPP92_020221' => 'vpl', 'Hund19000' => 'sun', 'Lalb_Chr01g0022231' => 'lal', 'Lalb_Chr03g0041531' => 'lal', 'Lalb_Chr12g0209931' => 'lal', 'Lalb_Chr19g0125811' => 'lal', 'Lj2A1127T51' => 'lonja', 'Lj3g0021651' => 'lja', 'Lj4g0018163' => 'lja', 'Lj6A454G40' => 'lonja', 'Lj6g0027043' => 'lja', 'Lsat_1_v5_gn_2_46760' => 'lsa', 'Lsat_1_v5_gn_4_62941' => 'lsa', 'Lsat_1_v5_gn_6_60701' => 'lsa', 'Lsat_1_v5_gn_9_15261' => 'lsa', 'Manes.11G000100' => 'mes', 'Manes.12G046800' => 'mes', 'Manes.13G048800' => 'mes', 'Manes.15G055600' => 'mes', 'MBI11_g07441_MAGBIO' => 'mbi', 'MBI19_g29455_MAGBIO' => 'mbi', 'MD05G1172400' => 'mdo', 'MD10G1160600' => 'mdo', 'Medtr2g025170' => 'mtr', 'Medtr7g056147' => 'mtr', 'Medtr8g012960' => 'mtr', 'MELO3C006302.2' => 'cme', 'MELO3C021057.2' => 'cme', 'MELO3C021706.2' => 'cme', 'Migut.D02499' => 'egut', 'Migut.D02500' => 'egut', 'Migut.G00732' => 'egut', 'Migut.M01348' => 'egut', 'Migut.N00628' => 'egut', 'MSTRG.17997' => 'ama', 'MSTRG.20966' => 'ama', 'MSTRG.4236' => 'ama', 'MSTRG.9805' => 'ama', 'Nitab4.5_0000045g0460' => 'nta', 'Nitab4.5_0000143g0470' => 'nta', 'Nitab4.5_0000676g0080' => 'nta', 'Nitab4.5_0000850g0150' => 'nta', 'Nitab4.5_0001198g0300' => 'nta', 'Nitab4.5_0003020g0010' => 'nta', 'Nitab4.5_0007437g0020' => 'nta', 'Nitab4.5_0008794g0020' => 'nta', 'Nn1g07944' => 'nnu', 'Nn3g20042' => 'nnu', 'Oeu002753.1' => 'oeu', 'Oeu009713.1' => 'oeu', 'Oeu023100.1' => 'oeu', 'Oeu025026.1' => 'oeu', 'Oeu031828.1' => 'oeu', 'Oeu037768.2' => 'oeu', 'Oeu049722.1' => 'oeu', 'Os02g0504700' => 'osa', 'Os03g0848600' => 'osa', 'Os04g0379600' => 'osa', 'Os08g0526400' => 'osa', 'Peaxi162Scf00238g00037' => 'pax', 'Peaxi162Scf00517g00623' => 'pax', 'Peaxi162Scf00558g00012' => 'pax', 'Peaxi162Scf00652g00120' => 'pax', 'PGR004G2124' => 'pgr', 'PGR044G0352' => 'pgr', 'PGR083G1505' => 'pgr', 'PGR083G2795' => 'pgr', 'PGSC0003DMG400004571' => 'stu', 'PGSC0003DMG400020099' => 'stu', 'PGSC0003DMG400027945' => 'stu', 'PGSC0003DMG400036375' => 'stu', 'Phvul.006G144600' => 'pvu', 'Phvul.008G130600' => 'pvu', 'Phvul.010G021200' => 'pvu', 'Potri.002G245400' => 'ptr', 'Potri.004G002500' => 'ptr', 'Potri.011G022000' => 'ptr', 'Pp3c14_15740' => 'ppa', 'Pp3c17_17040' => 'ppa', 'Pp3c1_23970' => 'ppa', 'Pp3c2_10900' => 'ppa', 'Prupe.4G013100' => 'ppe', 'Prupe.8G199800' => 'ppe', 'Psat0s3432g0160' => 'psa', 'Psat1g177320' => 'psa', 'Psat3g148160' => 'psa', 'PSO017G2014' => 'pso', 'PSO017G6178' => 'pso', 'PSO063G0461' => 'pso', 'PSO063G5024' => 'pso', 'PSO170G5184' => 'pso', 'PSO210G1922' => 'pso', 'PSO357G0378' => 'pso', 'PSO832G0516' => 'pso', 'QL03p008302' => 'qlo', 'QL05p069972' => 'qlo', 'QL09p051777' => 'qlo', 'QL09p052490' => 'qlo', 'RcHm_v2.0_Chr6g0284211' => 'rch', 'Rhsim01G0254100' => 'rsi', 'Rhsim09G0058700' => 'rsi', 'Rhsim13G0047200' => 'rsi', 'Sabra02G0186700' => 'sbr', 'SalBow8G0144' => 'sbo', 'SalBow8G1764' => 'sbo', 'SalBow8G3195' => 'sbo', 'Sc13g0000290' => 'sci', 'Sc17g0002180' => 'sci', 'Sed0007803' => 'sed', 'Sed0008860' => 'sed', 'Sed0014975' => 'sed', 'Sed0020018' => 'sed', 'Sed0022841' => 'sed', 'SEGI_28354' => 'sgi', 'SGA_v2.0_scaffold18G08332' => 'sas', 'SGA_v2.0_scaffold6G03221' => 'sas', 'Solyc06g083390.4' => 'sly', 'Solyc09g059430.3' => 'sly', 'Solyc11g012010.2' => 'sly', 'Solyc12g098440.2' => 'sly', 'Sopen06g034760' => 'spe', 'Sopen09g022570' => 'spe', 'Sopen12g033220' => 'spe', 'Sp3g22670' => 'spa', 'TAR362G1062' => 'tar', 'TAR624G0352' => 'tar', 'TAR629G2023' => 'tar', 'TAR633G2519' => 'tar', 'TAR636G0289' => 'tar', 'THA.LOC104808790' => 'tha', 'THA.LOC104821655' => 'tha', 'Thecc.01G221600' => 'tca', 'Thecc.06G230800' => 'tca', 'Thhalv10002991m.g' => 'esa', 'TPR.G13174' => 'tpr', 'TPR.G17116' => 'tpr', 'TPR.G6437' => 'tpr', 'TWI18G0470' => 'twi', 'TWI36G0241' => 'twi', 'TWI63G0207' => 'twi', 'TWI75G1384' => 'twi', 'unitig_746.g26591' => 'ugi', 'unitig_899.g15413' => 'ugi', 'vmacro00452' => 'vma', 'vmacro02779' => 'vma', 'vmacro14741' => 'vma', 'VMungo0331G2000' => 'vmu', 'VMungo0540G0904' => 'vmu', 'VMungo1383G0545' => 'vmu', 'Zm00001eb085850' => 'zma', 'Zm00001eb210800' => 'zma', 'Zm00001eb420650' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002186', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002186' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002186', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002186' ) ), 'genes' => array( 'A03p44020' => 'bna', 'Aa31LG8G11940' => 'aar', 'Aa31LG9G4910' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.421' => 'aag', 'Actinidia02329' => 'ach', 'Actinidia09472' => 'ach', 'Actinidia26875' => 'ach', 'Actinidia30059' => 'ach', 'Actinidia31462' => 'ach', 'Actinidia35853' => 'ach', 'AL3G40780' => 'aly', 'Aqoxy1G04163' => 'aox', 'Aqoxy2G03899' => 'aox', 'arahy.Tifrunner.gnm1.ann1.L384WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8DCPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP0H42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEYT15' => 'arhy', 'AT3G25070' => 'ath', 'ATR0069G060' => 'atr', 'ATR1128G106' => 'atr', 'Atru.chr1.2496' => 'acertr', 'Atru.chr10.2307' => 'acertr', 'Atru.chr4.1607' => 'acertr', 'Atru.chr6.1419' => 'acertr', 'AUR62018576' => 'cqu', 'AUR62020840' => 'cqu', 'BcaB06g26730' => 'bca', 'BcaB08g34432' => 'bca', 'BcaC01g03246' => 'bca', 'BcaC06g35778' => 'bca', 'BolC3t17726H' => 'bol', 'BolC7t41569H' => 'bol', 'BraA03t13533Z' => 'bra', 'C03p54390' => 'bna', 'C07p11000' => 'bna', 'CAN.G1186.12' => 'can', 'CAN.G5.47' => 'can', 'CAN.G767.9' => 'can', 'CAN.G874.2' => 'can', 'CANSAT01G0795' => 'cansat', 'CANSAT01G1734' => 'cansat', 'CANSAT56G1175' => 'cansat', 'CARHR101410' => 'chi', 'Carub.0003s2542' => 'cru', 'Ca_06555_v3' => 'car', 'Ca_23229_v3' => 'car', 'Cc01_g16790' => 'ccan', 'Cc03_g08120' => 'ccan', 'Cc09_g01050' => 'ccan', 'CDE02G1477' => 'cde', 'CDE02G2744' => 'cde', 'CDE05G0222' => 'cde', 'CDE05G1168' => 'cde', 'CDE06G1222' => 'cde', 'CDE09G0775' => 'cde', 'Cfa004376' => 'cfa', 'Cfa014948' => 'cfa', 'Ciclev10006122m.g' => 'ccl', 'Ciclev10006483m.g' => 'ccl', 'Ciclev10006802m.g' => 'ccl', 'Ciclev10017621m.g' => 'ccl', 'Ciclev10021726m.g' => 'ccl', 'CiPaw.01G049400' => 'cil', 'CiPaw.01G118400' => 'cil', 'CiPaw.02G022900' => 'cil', 'CiPaw.02G065300' => 'cil', 'CiPaw.10G076200' => 'cil', 'ClCG01G009910' => 'cla', 'ClCG05G003210' => 'cla', 'ClCG09G008810' => 'cla', 'COL.COLO4_15629' => 'col', 'Cpa.g.c44943' => 'cpa', 'Cpa.g.sc8.126' => 'cpa', 'Cpa.g.sc8.127' => 'cpa', 'Cpa.g.sc83.26' => 'cpa', 'CsaV3_1G045860' => 'csa', 'CsaV3_3G010840' => 'csa', 'CsaV3_7G026140' => 'csa', 'CSS0001825' => 'camsi', 'CSS0016091' => 'camsi', 'CSS0016957' => 'camsi', 'CSS0030985' => 'camsi', 'CSS0037554' => 'camsi', 'DCAR_004726' => 'dca', 'DCAR_004869' => 'dca', 'DCAR_012662' => 'dca', 'DCAR_018639' => 'dca', 'DCAR_026635' => 'dca', 'Dinv07382' => 'din', 'Dinv12658' => 'din', 'Dinv13953' => 'din', 'Dinv19181' => 'din', 'Dinv27213' => 'din', 'Dinv38201' => 'din', 'Duzib133G1090' => 'dzi', 'Duzib138G0625' => 'dzi', 'Duzib192G0729' => 'dzi', 'Duzib211G0360' => 'dzi', 'Duzib235G0519' => 'dzi', 'ECA247G1857' => 'eca', 'EL10Ac3g07473' => 'bvu', 'Eucgr.D01380' => 'egr', 'Eucgr.H00779' => 'egr', 'Eucgr.H02736' => 'egr', 'Eucgr.K02142' => 'egr', 'FAN06G1532' => 'fan', 'FAN10G1903' => 'fan', 'FAN15G3260' => 'fan', 'FAN24G2024' => 'fan', 'FAN25G0887' => 'fan', 'FAN27G2350' => 'fan', 'FvH4_2g18650' => 'fve', 'FvH4_3g01180' => 'fve', 'FvH4_7g07170' => 'fve', 'Glyma.03G084000' => 'gma', 'Glyma.07G264500' => 'gma', 'Glyma.08G349500' => 'gma', 'Glyma.09G008700' => 'gma', 'Glyma.16G090700' => 'gma', 'Glyma.17G009600' => 'gma', 'Glyma.18G166800' => 'gma', 'Gohir.A06G152300' => 'ghi', 'Gohir.A06G206201' => 'ghi', 'Gohir.A07G199700' => 'ghi', 'Gohir.A08G195300' => 'ghi', 'Gohir.A10G010350' => 'ghi', 'Gohir.D06G158600' => 'ghi', 'Gohir.D06G215450' => 'ghi', 'Gohir.D07G206100' => 'ghi', 'Gohir.D08G212670' => 'ghi', 'Gorai.001G232400' => 'gra', 'Gorai.004G226600' => 'gra', 'Gorai.010G185300' => 'gra', 'Gorai.010G250900' => 'gra', 'Gorai.011G011000' => 'gra', 'GSVIVG01004747001' => 'vvi', 'GSVIVG01006684001' => 'vvi', 'GSVIVG01007242001' => 'vvi', 'GSVIVG01020994001' => 'vvi', 'HanXRQChr02g0059051' => 'han', 'HanXRQChr07g0189521' => 'han', 'HanXRQChr10g0279471' => 'han', 'HanXRQChr16g0498991' => 'han', 'HanXRQChr16g0516831' => 'han', 'Haze_06894' => 'cav', 'Haze_11636' => 'cav', 'Haze_15037' => 'cav', 'Hma1.2p1_0149F.1_g066350' => 'hma', 'HPP92_000208' => 'vpl', 'HPP92_001411' => 'vpl', 'HPP92_001418' => 'vpl', 'HPP92_008217' => 'vpl', 'HPP92_011652' => 'vpl', 'HPP92_011722' => 'vpl', 'HPP92_013623' => 'vpl', 'HPP92_020221' => 'vpl', 'Hund19000' => 'sun', 'Lalb_Chr01g0022231' => 'lal', 'Lalb_Chr03g0041531' => 'lal', 'Lalb_Chr12g0209931' => 'lal', 'Lalb_Chr19g0125811' => 'lal', 'Lj2A1127T51' => 'lonja', 'Lj3g0021651' => 'lja', 'Lj4g0018163' => 'lja', 'Lj6A454G40' => 'lonja', 'Lj6g0027043' => 'lja', 'Lsat_1_v5_gn_2_46760' => 'lsa', 'Lsat_1_v5_gn_4_62941' => 'lsa', 'Lsat_1_v5_gn_6_60701' => 'lsa', 'Lsat_1_v5_gn_9_15261' => 'lsa', 'Manes.11G000100' => 'mes', 'Manes.12G046800' => 'mes', 'Manes.13G048800' => 'mes', 'Manes.15G055600' => 'mes', 'MBI11_g07441_MAGBIO' => 'mbi', 'MBI19_g29455_MAGBIO' => 'mbi', 'MD05G1172400' => 'mdo', 'MD10G1160600' => 'mdo', 'Medtr2g025170' => 'mtr', 'Medtr7g056147' => 'mtr', 'Medtr8g012960' => 'mtr', 'MELO3C006302.2' => 'cme', 'MELO3C021057.2' => 'cme', 'MELO3C021706.2' => 'cme', 'Migut.D02499' => 'egut', 'Migut.D02500' => 'egut', 'Migut.G00732' => 'egut', 'Migut.M01348' => 'egut', 'Migut.N00628' => 'egut', 'MSTRG.17997' => 'ama', 'MSTRG.20966' => 'ama', 'MSTRG.4236' => 'ama', 'MSTRG.9805' => 'ama', 'Nitab4.5_0000045g0460' => 'nta', 'Nitab4.5_0000143g0470' => 'nta', 'Nitab4.5_0000676g0080' => 'nta', 'Nitab4.5_0000850g0150' => 'nta', 'Nitab4.5_0001198g0300' => 'nta', 'Nitab4.5_0003020g0010' => 'nta', 'Nitab4.5_0007437g0020' => 'nta', 'Nitab4.5_0008794g0020' => 'nta', 'Nn1g07944' => 'nnu', 'Nn3g20042' => 'nnu', 'Oeu002753.1' => 'oeu', 'Oeu009713.1' => 'oeu', 'Oeu023100.1' => 'oeu', 'Oeu025026.1' => 'oeu', 'Oeu031828.1' => 'oeu', 'Oeu037768.2' => 'oeu', 'Oeu049722.1' => 'oeu', 'Os02g0504700' => 'osa', 'Os03g0848600' => 'osa', 'Os04g0379600' => 'osa', 'Os08g0526400' => 'osa', 'Peaxi162Scf00238g00037' => 'pax', 'Peaxi162Scf00517g00623' => 'pax', 'Peaxi162Scf00558g00012' => 'pax', 'Peaxi162Scf00652g00120' => 'pax', 'PGR004G2124' => 'pgr', 'PGR044G0352' => 'pgr', 'PGR083G1505' => 'pgr', 'PGR083G2795' => 'pgr', 'PGSC0003DMG400004571' => 'stu', 'PGSC0003DMG400020099' => 'stu', 'PGSC0003DMG400027945' => 'stu', 'PGSC0003DMG400036375' => 'stu', 'Phvul.006G144600' => 'pvu', 'Phvul.008G130600' => 'pvu', 'Phvul.010G021200' => 'pvu', 'Potri.002G245400' => 'ptr', 'Potri.004G002500' => 'ptr', 'Potri.011G022000' => 'ptr', 'Pp3c14_15740' => 'ppa', 'Pp3c17_17040' => 'ppa', 'Pp3c1_23970' => 'ppa', 'Pp3c2_10900' => 'ppa', 'Prupe.4G013100' => 'ppe', 'Prupe.8G199800' => 'ppe', 'Psat0s3432g0160' => 'psa', 'Psat1g177320' => 'psa', 'Psat3g148160' => 'psa', 'PSO017G2014' => 'pso', 'PSO017G6178' => 'pso', 'PSO063G0461' => 'pso', 'PSO063G5024' => 'pso', 'PSO170G5184' => 'pso', 'PSO210G1922' => 'pso', 'PSO357G0378' => 'pso', 'PSO832G0516' => 'pso', 'QL03p008302' => 'qlo', 'QL05p069972' => 'qlo', 'QL09p051777' => 'qlo', 'QL09p052490' => 'qlo', 'RcHm_v2.0_Chr6g0284211' => 'rch', 'Rhsim01G0254100' => 'rsi', 'Rhsim09G0058700' => 'rsi', 'Rhsim13G0047200' => 'rsi', 'Sabra02G0186700' => 'sbr', 'SalBow8G0144' => 'sbo', 'SalBow8G1764' => 'sbo', 'SalBow8G3195' => 'sbo', 'Sc13g0000290' => 'sci', 'Sc17g0002180' => 'sci', 'Sed0007803' => 'sed', 'Sed0008860' => 'sed', 'Sed0014975' => 'sed', 'Sed0020018' => 'sed', 'Sed0022841' => 'sed', 'SEGI_28354' => 'sgi', 'SGA_v2.0_scaffold18G08332' => 'sas', 'SGA_v2.0_scaffold6G03221' => 'sas', 'Solyc06g083390.4' => 'sly', 'Solyc09g059430.3' => 'sly', 'Solyc11g012010.2' => 'sly', 'Solyc12g098440.2' => 'sly', 'Sopen06g034760' => 'spe', 'Sopen09g022570' => 'spe', 'Sopen12g033220' => 'spe', 'Sp3g22670' => 'spa', 'TAR362G1062' => 'tar', 'TAR624G0352' => 'tar', 'TAR629G2023' => 'tar', 'TAR633G2519' => 'tar', 'TAR636G0289' => 'tar', 'THA.LOC104808790' => 'tha', 'THA.LOC104821655' => 'tha', 'Thecc.01G221600' => 'tca', 'Thecc.06G230800' => 'tca', 'Thhalv10002991m.g' => 'esa', 'TPR.G13174' => 'tpr', 'TPR.G17116' => 'tpr', 'TPR.G6437' => 'tpr', 'TWI18G0470' => 'twi', 'TWI36G0241' => 'twi', 'TWI63G0207' => 'twi', 'TWI75G1384' => 'twi', 'unitig_746.g26591' => 'ugi', 'unitig_899.g15413' => 'ugi', 'vmacro00452' => 'vma', 'vmacro02779' => 'vma', 'vmacro14741' => 'vma', 'VMungo0331G2000' => 'vmu', 'VMungo0540G0904' => 'vmu', 'VMungo1383G0545' => 'vmu', 'Zm00001eb085850' => 'zma', 'Zm00001eb210800' => 'zma', 'Zm00001eb420650' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002186' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002186' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002186' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002186' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002186', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p44020' => 'bna', 'Aa31LG8G11940' => 'aar', 'Aa31LG9G4910' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.421' => 'aag', 'Actinidia02329' => 'ach', 'Actinidia09472' => 'ach', 'Actinidia26875' => 'ach', 'Actinidia30059' => 'ach', 'Actinidia31462' => 'ach', 'Actinidia35853' => 'ach', 'AL3G40780' => 'aly', 'Aqoxy1G04163' => 'aox', 'Aqoxy2G03899' => 'aox', 'arahy.Tifrunner.gnm1.ann1.L384WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8DCPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP0H42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEYT15' => 'arhy', 'AT3G25070' => 'ath', 'ATR0069G060' => 'atr', 'ATR1128G106' => 'atr', 'Atru.chr1.2496' => 'acertr', 'Atru.chr10.2307' => 'acertr', 'Atru.chr4.1607' => 'acertr', 'Atru.chr6.1419' => 'acertr', 'AUR62018576' => 'cqu', 'AUR62020840' => 'cqu', 'BcaB06g26730' => 'bca', 'BcaB08g34432' => 'bca', 'BcaC01g03246' => 'bca', 'BcaC06g35778' => 'bca', 'BolC3t17726H' => 'bol', 'BolC7t41569H' => 'bol', 'BraA03t13533Z' => 'bra', 'C03p54390' => 'bna', 'C07p11000' => 'bna', 'CAN.G1186.12' => 'can', 'CAN.G5.47' => 'can', 'CAN.G767.9' => 'can', 'CAN.G874.2' => 'can', 'CANSAT01G0795' => 'cansat', 'CANSAT01G1734' => 'cansat', 'CANSAT56G1175' => 'cansat', 'CARHR101410' => 'chi', 'Carub.0003s2542' => 'cru', 'Ca_06555_v3' => 'car', 'Ca_23229_v3' => 'car', 'Cc01_g16790' => 'ccan', 'Cc03_g08120' => 'ccan', 'Cc09_g01050' => 'ccan', 'CDE02G1477' => 'cde', 'CDE02G2744' => 'cde', 'CDE05G0222' => 'cde', 'CDE05G1168' => 'cde', 'CDE06G1222' => 'cde', 'CDE09G0775' => 'cde', 'Cfa004376' => 'cfa', 'Cfa014948' => 'cfa', 'Ciclev10006122m.g' => 'ccl', 'Ciclev10006483m.g' => 'ccl', 'Ciclev10006802m.g' => 'ccl', 'Ciclev10017621m.g' => 'ccl', 'Ciclev10021726m.g' => 'ccl', 'CiPaw.01G049400' => 'cil', 'CiPaw.01G118400' => 'cil', 'CiPaw.02G022900' => 'cil', 'CiPaw.02G065300' => 'cil', 'CiPaw.10G076200' => 'cil', 'ClCG01G009910' => 'cla', 'ClCG05G003210' => 'cla', 'ClCG09G008810' => 'cla', 'COL.COLO4_15629' => 'col', 'Cpa.g.c44943' => 'cpa', 'Cpa.g.sc8.126' => 'cpa', 'Cpa.g.sc8.127' => 'cpa', 'Cpa.g.sc83.26' => 'cpa', 'CsaV3_1G045860' => 'csa', 'CsaV3_3G010840' => 'csa', 'CsaV3_7G026140' => 'csa', 'CSS0001825' => 'camsi', 'CSS0016091' => 'camsi', 'CSS0016957' => 'camsi', 'CSS0030985' => 'camsi', 'CSS0037554' => 'camsi', 'DCAR_004726' => 'dca', 'DCAR_004869' => 'dca', 'DCAR_012662' => 'dca', 'DCAR_018639' => 'dca', 'DCAR_026635' => 'dca', 'Dinv07382' => 'din', 'Dinv12658' => 'din', 'Dinv13953' => 'din', 'Dinv19181' => 'din', 'Dinv27213' => 'din', 'Dinv38201' => 'din', 'Duzib133G1090' => 'dzi', 'Duzib138G0625' => 'dzi', 'Duzib192G0729' => 'dzi', 'Duzib211G0360' => 'dzi', 'Duzib235G0519' => 'dzi', 'ECA247G1857' => 'eca', 'EL10Ac3g07473' => 'bvu', 'Eucgr.D01380' => 'egr', 'Eucgr.H00779' => 'egr', 'Eucgr.H02736' => 'egr', 'Eucgr.K02142' => 'egr', 'FAN06G1532' => 'fan', 'FAN10G1903' => 'fan', 'FAN15G3260' => 'fan', 'FAN24G2024' => 'fan', 'FAN25G0887' => 'fan', 'FAN27G2350' => 'fan', 'FvH4_2g18650' => 'fve', 'FvH4_3g01180' => 'fve', 'FvH4_7g07170' => 'fve', 'Glyma.03G084000' => 'gma', 'Glyma.07G264500' => 'gma', 'Glyma.08G349500' => 'gma', 'Glyma.09G008700' => 'gma', 'Glyma.16G090700' => 'gma', 'Glyma.17G009600' => 'gma', 'Glyma.18G166800' => 'gma', 'Gohir.A06G152300' => 'ghi', 'Gohir.A06G206201' => 'ghi', 'Gohir.A07G199700' => 'ghi', 'Gohir.A08G195300' => 'ghi', 'Gohir.A10G010350' => 'ghi', 'Gohir.D06G158600' => 'ghi', 'Gohir.D06G215450' => 'ghi', 'Gohir.D07G206100' => 'ghi', 'Gohir.D08G212670' => 'ghi', 'Gorai.001G232400' => 'gra', 'Gorai.004G226600' => 'gra', 'Gorai.010G185300' => 'gra', 'Gorai.010G250900' => 'gra', 'Gorai.011G011000' => 'gra', 'GSVIVG01004747001' => 'vvi', 'GSVIVG01006684001' => 'vvi', 'GSVIVG01007242001' => 'vvi', 'GSVIVG01020994001' => 'vvi', 'HanXRQChr02g0059051' => 'han', 'HanXRQChr07g0189521' => 'han', 'HanXRQChr10g0279471' => 'han', 'HanXRQChr16g0498991' => 'han', 'HanXRQChr16g0516831' => 'han', 'Haze_06894' => 'cav', 'Haze_11636' => 'cav', 'Haze_15037' => 'cav', 'Hma1.2p1_0149F.1_g066350' => 'hma', 'HPP92_000208' => 'vpl', 'HPP92_001411' => 'vpl', 'HPP92_001418' => 'vpl', 'HPP92_008217' => 'vpl', 'HPP92_011652' => 'vpl', 'HPP92_011722' => 'vpl', 'HPP92_013623' => 'vpl', 'HPP92_020221' => 'vpl', 'Hund19000' => 'sun', 'Lalb_Chr01g0022231' => 'lal', 'Lalb_Chr03g0041531' => 'lal', 'Lalb_Chr12g0209931' => 'lal', 'Lalb_Chr19g0125811' => 'lal', 'Lj2A1127T51' => 'lonja', 'Lj3g0021651' => 'lja', 'Lj4g0018163' => 'lja', 'Lj6A454G40' => 'lonja', 'Lj6g0027043' => 'lja', 'Lsat_1_v5_gn_2_46760' => 'lsa', 'Lsat_1_v5_gn_4_62941' => 'lsa', 'Lsat_1_v5_gn_6_60701' => 'lsa', 'Lsat_1_v5_gn_9_15261' => 'lsa', 'Manes.11G000100' => 'mes', 'Manes.12G046800' => 'mes', 'Manes.13G048800' => 'mes', 'Manes.15G055600' => 'mes', 'MBI11_g07441_MAGBIO' => 'mbi', 'MBI19_g29455_MAGBIO' => 'mbi', 'MD05G1172400' => 'mdo', 'MD10G1160600' => 'mdo', 'Medtr2g025170' => 'mtr', 'Medtr7g056147' => 'mtr', 'Medtr8g012960' => 'mtr', 'MELO3C006302.2' => 'cme', 'MELO3C021057.2' => 'cme', 'MELO3C021706.2' => 'cme', 'Migut.D02499' => 'egut', 'Migut.D02500' => 'egut', 'Migut.G00732' => 'egut', 'Migut.M01348' => 'egut', 'Migut.N00628' => 'egut', 'MSTRG.17997' => 'ama', 'MSTRG.20966' => 'ama', 'MSTRG.4236' => 'ama', 'MSTRG.9805' => 'ama', 'Nitab4.5_0000045g0460' => 'nta', 'Nitab4.5_0000143g0470' => 'nta', 'Nitab4.5_0000676g0080' => 'nta', 'Nitab4.5_0000850g0150' => 'nta', 'Nitab4.5_0001198g0300' => 'nta', 'Nitab4.5_0003020g0010' => 'nta', 'Nitab4.5_0007437g0020' => 'nta', 'Nitab4.5_0008794g0020' => 'nta', 'Nn1g07944' => 'nnu', 'Nn3g20042' => 'nnu', 'Oeu002753.1' => 'oeu', 'Oeu009713.1' => 'oeu', 'Oeu023100.1' => 'oeu', 'Oeu025026.1' => 'oeu', 'Oeu031828.1' => 'oeu', 'Oeu037768.2' => 'oeu', 'Oeu049722.1' => 'oeu', 'Os02g0504700' => 'osa', 'Os03g0848600' => 'osa', 'Os04g0379600' => 'osa', 'Os08g0526400' => 'osa', 'Peaxi162Scf00238g00037' => 'pax', 'Peaxi162Scf00517g00623' => 'pax', 'Peaxi162Scf00558g00012' => 'pax', 'Peaxi162Scf00652g00120' => 'pax', 'PGR004G2124' => 'pgr', 'PGR044G0352' => 'pgr', 'PGR083G1505' => 'pgr', 'PGR083G2795' => 'pgr', 'PGSC0003DMG400004571' => 'stu', 'PGSC0003DMG400020099' => 'stu', 'PGSC0003DMG400027945' => 'stu', 'PGSC0003DMG400036375' => 'stu', 'Phvul.006G144600' => 'pvu', 'Phvul.008G130600' => 'pvu', 'Phvul.010G021200' => 'pvu', 'Potri.002G245400' => 'ptr', 'Potri.004G002500' => 'ptr', 'Potri.011G022000' => 'ptr', 'Pp3c14_15740' => 'ppa', 'Pp3c17_17040' => 'ppa', 'Pp3c1_23970' => 'ppa', 'Pp3c2_10900' => 'ppa', 'Prupe.4G013100' => 'ppe', 'Prupe.8G199800' => 'ppe', 'Psat0s3432g0160' => 'psa', 'Psat1g177320' => 'psa', 'Psat3g148160' => 'psa', 'PSO017G2014' => 'pso', 'PSO017G6178' => 'pso', 'PSO063G0461' => 'pso', 'PSO063G5024' => 'pso', 'PSO170G5184' => 'pso', 'PSO210G1922' => 'pso', 'PSO357G0378' => 'pso', 'PSO832G0516' => 'pso', 'QL03p008302' => 'qlo', 'QL05p069972' => 'qlo', 'QL09p051777' => 'qlo', 'QL09p052490' => 'qlo', 'RcHm_v2.0_Chr6g0284211' => 'rch', 'Rhsim01G0254100' => 'rsi', 'Rhsim09G0058700' => 'rsi', 'Rhsim13G0047200' => 'rsi', 'Sabra02G0186700' => 'sbr', 'SalBow8G0144' => 'sbo', 'SalBow8G1764' => 'sbo', 'SalBow8G3195' => 'sbo', 'Sc13g0000290' => 'sci', 'Sc17g0002180' => 'sci', 'Sed0007803' => 'sed', 'Sed0008860' => 'sed', 'Sed0014975' => 'sed', 'Sed0020018' => 'sed', 'Sed0022841' => 'sed', 'SEGI_28354' => 'sgi', 'SGA_v2.0_scaffold18G08332' => 'sas', 'SGA_v2.0_scaffold6G03221' => 'sas', 'Solyc06g083390.4' => 'sly', 'Solyc09g059430.3' => 'sly', 'Solyc11g012010.2' => 'sly', 'Solyc12g098440.2' => 'sly', 'Sopen06g034760' => 'spe', 'Sopen09g022570' => 'spe', 'Sopen12g033220' => 'spe', 'Sp3g22670' => 'spa', 'TAR362G1062' => 'tar', 'TAR624G0352' => 'tar', 'TAR629G2023' => 'tar', 'TAR633G2519' => 'tar', 'TAR636G0289' => 'tar', 'THA.LOC104808790' => 'tha', 'THA.LOC104821655' => 'tha', 'Thecc.01G221600' => 'tca', 'Thecc.06G230800' => 'tca', 'Thhalv10002991m.g' => 'esa', 'TPR.G13174' => 'tpr', 'TPR.G17116' => 'tpr', 'TPR.G6437' => 'tpr', 'TWI18G0470' => 'twi', 'TWI36G0241' => 'twi', 'TWI63G0207' => 'twi', 'TWI75G1384' => 'twi', 'unitig_746.g26591' => 'ugi', 'unitig_899.g15413' => 'ugi', 'vmacro00452' => 'vma', 'vmacro02779' => 'vma', 'vmacro14741' => 'vma', 'VMungo0331G2000' => 'vmu', 'VMungo0540G0904' => 'vmu', 'VMungo1383G0545' => 'vmu', 'Zm00001eb085850' => 'zma', 'Zm00001eb210800' => 'zma', 'Zm00001eb420650' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002186', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002186' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002186', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002186' ) ), 'genes' => array( 'A03p44020' => 'bna', 'Aa31LG8G11940' => 'aar', 'Aa31LG9G4910' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.421' => 'aag', 'Actinidia02329' => 'ach', 'Actinidia09472' => 'ach', 'Actinidia26875' => 'ach', 'Actinidia30059' => 'ach', 'Actinidia31462' => 'ach', 'Actinidia35853' => 'ach', 'AL3G40780' => 'aly', 'Aqoxy1G04163' => 'aox', 'Aqoxy2G03899' => 'aox', 'arahy.Tifrunner.gnm1.ann1.L384WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8DCPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP0H42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEYT15' => 'arhy', 'AT3G25070' => 'ath', 'ATR0069G060' => 'atr', 'ATR1128G106' => 'atr', 'Atru.chr1.2496' => 'acertr', 'Atru.chr10.2307' => 'acertr', 'Atru.chr4.1607' => 'acertr', 'Atru.chr6.1419' => 'acertr', 'AUR62018576' => 'cqu', 'AUR62020840' => 'cqu', 'BcaB06g26730' => 'bca', 'BcaB08g34432' => 'bca', 'BcaC01g03246' => 'bca', 'BcaC06g35778' => 'bca', 'BolC3t17726H' => 'bol', 'BolC7t41569H' => 'bol', 'BraA03t13533Z' => 'bra', 'C03p54390' => 'bna', 'C07p11000' => 'bna', 'CAN.G1186.12' => 'can', 'CAN.G5.47' => 'can', 'CAN.G767.9' => 'can', 'CAN.G874.2' => 'can', 'CANSAT01G0795' => 'cansat', 'CANSAT01G1734' => 'cansat', 'CANSAT56G1175' => 'cansat', 'CARHR101410' => 'chi', 'Carub.0003s2542' => 'cru', 'Ca_06555_v3' => 'car', 'Ca_23229_v3' => 'car', 'Cc01_g16790' => 'ccan', 'Cc03_g08120' => 'ccan', 'Cc09_g01050' => 'ccan', 'CDE02G1477' => 'cde', 'CDE02G2744' => 'cde', 'CDE05G0222' => 'cde', 'CDE05G1168' => 'cde', 'CDE06G1222' => 'cde', 'CDE09G0775' => 'cde', 'Cfa004376' => 'cfa', 'Cfa014948' => 'cfa', 'Ciclev10006122m.g' => 'ccl', 'Ciclev10006483m.g' => 'ccl', 'Ciclev10006802m.g' => 'ccl', 'Ciclev10017621m.g' => 'ccl', 'Ciclev10021726m.g' => 'ccl', 'CiPaw.01G049400' => 'cil', 'CiPaw.01G118400' => 'cil', 'CiPaw.02G022900' => 'cil', 'CiPaw.02G065300' => 'cil', 'CiPaw.10G076200' => 'cil', 'ClCG01G009910' => 'cla', 'ClCG05G003210' => 'cla', 'ClCG09G008810' => 'cla', 'COL.COLO4_15629' => 'col', 'Cpa.g.c44943' => 'cpa', 'Cpa.g.sc8.126' => 'cpa', 'Cpa.g.sc8.127' => 'cpa', 'Cpa.g.sc83.26' => 'cpa', 'CsaV3_1G045860' => 'csa', 'CsaV3_3G010840' => 'csa', 'CsaV3_7G026140' => 'csa', 'CSS0001825' => 'camsi', 'CSS0016091' => 'camsi', 'CSS0016957' => 'camsi', 'CSS0030985' => 'camsi', 'CSS0037554' => 'camsi', 'DCAR_004726' => 'dca', 'DCAR_004869' => 'dca', 'DCAR_012662' => 'dca', 'DCAR_018639' => 'dca', 'DCAR_026635' => 'dca', 'Dinv07382' => 'din', 'Dinv12658' => 'din', 'Dinv13953' => 'din', 'Dinv19181' => 'din', 'Dinv27213' => 'din', 'Dinv38201' => 'din', 'Duzib133G1090' => 'dzi', 'Duzib138G0625' => 'dzi', 'Duzib192G0729' => 'dzi', 'Duzib211G0360' => 'dzi', 'Duzib235G0519' => 'dzi', 'ECA247G1857' => 'eca', 'EL10Ac3g07473' => 'bvu', 'Eucgr.D01380' => 'egr', 'Eucgr.H00779' => 'egr', 'Eucgr.H02736' => 'egr', 'Eucgr.K02142' => 'egr', 'FAN06G1532' => 'fan', 'FAN10G1903' => 'fan', 'FAN15G3260' => 'fan', 'FAN24G2024' => 'fan', 'FAN25G0887' => 'fan', 'FAN27G2350' => 'fan', 'FvH4_2g18650' => 'fve', 'FvH4_3g01180' => 'fve', 'FvH4_7g07170' => 'fve', 'Glyma.03G084000' => 'gma', 'Glyma.07G264500' => 'gma', 'Glyma.08G349500' => 'gma', 'Glyma.09G008700' => 'gma', 'Glyma.16G090700' => 'gma', 'Glyma.17G009600' => 'gma', 'Glyma.18G166800' => 'gma', 'Gohir.A06G152300' => 'ghi', 'Gohir.A06G206201' => 'ghi', 'Gohir.A07G199700' => 'ghi', 'Gohir.A08G195300' => 'ghi', 'Gohir.A10G010350' => 'ghi', 'Gohir.D06G158600' => 'ghi', 'Gohir.D06G215450' => 'ghi', 'Gohir.D07G206100' => 'ghi', 'Gohir.D08G212670' => 'ghi', 'Gorai.001G232400' => 'gra', 'Gorai.004G226600' => 'gra', 'Gorai.010G185300' => 'gra', 'Gorai.010G250900' => 'gra', 'Gorai.011G011000' => 'gra', 'GSVIVG01004747001' => 'vvi', 'GSVIVG01006684001' => 'vvi', 'GSVIVG01007242001' => 'vvi', 'GSVIVG01020994001' => 'vvi', 'HanXRQChr02g0059051' => 'han', 'HanXRQChr07g0189521' => 'han', 'HanXRQChr10g0279471' => 'han', 'HanXRQChr16g0498991' => 'han', 'HanXRQChr16g0516831' => 'han', 'Haze_06894' => 'cav', 'Haze_11636' => 'cav', 'Haze_15037' => 'cav', 'Hma1.2p1_0149F.1_g066350' => 'hma', 'HPP92_000208' => 'vpl', 'HPP92_001411' => 'vpl', 'HPP92_001418' => 'vpl', 'HPP92_008217' => 'vpl', 'HPP92_011652' => 'vpl', 'HPP92_011722' => 'vpl', 'HPP92_013623' => 'vpl', 'HPP92_020221' => 'vpl', 'Hund19000' => 'sun', 'Lalb_Chr01g0022231' => 'lal', 'Lalb_Chr03g0041531' => 'lal', 'Lalb_Chr12g0209931' => 'lal', 'Lalb_Chr19g0125811' => 'lal', 'Lj2A1127T51' => 'lonja', 'Lj3g0021651' => 'lja', 'Lj4g0018163' => 'lja', 'Lj6A454G40' => 'lonja', 'Lj6g0027043' => 'lja', 'Lsat_1_v5_gn_2_46760' => 'lsa', 'Lsat_1_v5_gn_4_62941' => 'lsa', 'Lsat_1_v5_gn_6_60701' => 'lsa', 'Lsat_1_v5_gn_9_15261' => 'lsa', 'Manes.11G000100' => 'mes', 'Manes.12G046800' => 'mes', 'Manes.13G048800' => 'mes', 'Manes.15G055600' => 'mes', 'MBI11_g07441_MAGBIO' => 'mbi', 'MBI19_g29455_MAGBIO' => 'mbi', 'MD05G1172400' => 'mdo', 'MD10G1160600' => 'mdo', 'Medtr2g025170' => 'mtr', 'Medtr7g056147' => 'mtr', 'Medtr8g012960' => 'mtr', 'MELO3C006302.2' => 'cme', 'MELO3C021057.2' => 'cme', 'MELO3C021706.2' => 'cme', 'Migut.D02499' => 'egut', 'Migut.D02500' => 'egut', 'Migut.G00732' => 'egut', 'Migut.M01348' => 'egut', 'Migut.N00628' => 'egut', 'MSTRG.17997' => 'ama', 'MSTRG.20966' => 'ama', 'MSTRG.4236' => 'ama', 'MSTRG.9805' => 'ama', 'Nitab4.5_0000045g0460' => 'nta', 'Nitab4.5_0000143g0470' => 'nta', 'Nitab4.5_0000676g0080' => 'nta', 'Nitab4.5_0000850g0150' => 'nta', 'Nitab4.5_0001198g0300' => 'nta', 'Nitab4.5_0003020g0010' => 'nta', 'Nitab4.5_0007437g0020' => 'nta', 'Nitab4.5_0008794g0020' => 'nta', 'Nn1g07944' => 'nnu', 'Nn3g20042' => 'nnu', 'Oeu002753.1' => 'oeu', 'Oeu009713.1' => 'oeu', 'Oeu023100.1' => 'oeu', 'Oeu025026.1' => 'oeu', 'Oeu031828.1' => 'oeu', 'Oeu037768.2' => 'oeu', 'Oeu049722.1' => 'oeu', 'Os02g0504700' => 'osa', 'Os03g0848600' => 'osa', 'Os04g0379600' => 'osa', 'Os08g0526400' => 'osa', 'Peaxi162Scf00238g00037' => 'pax', 'Peaxi162Scf00517g00623' => 'pax', 'Peaxi162Scf00558g00012' => 'pax', 'Peaxi162Scf00652g00120' => 'pax', 'PGR004G2124' => 'pgr', 'PGR044G0352' => 'pgr', 'PGR083G1505' => 'pgr', 'PGR083G2795' => 'pgr', 'PGSC0003DMG400004571' => 'stu', 'PGSC0003DMG400020099' => 'stu', 'PGSC0003DMG400027945' => 'stu', 'PGSC0003DMG400036375' => 'stu', 'Phvul.006G144600' => 'pvu', 'Phvul.008G130600' => 'pvu', 'Phvul.010G021200' => 'pvu', 'Potri.002G245400' => 'ptr', 'Potri.004G002500' => 'ptr', 'Potri.011G022000' => 'ptr', 'Pp3c14_15740' => 'ppa', 'Pp3c17_17040' => 'ppa', 'Pp3c1_23970' => 'ppa', 'Pp3c2_10900' => 'ppa', 'Prupe.4G013100' => 'ppe', 'Prupe.8G199800' => 'ppe', 'Psat0s3432g0160' => 'psa', 'Psat1g177320' => 'psa', 'Psat3g148160' => 'psa', 'PSO017G2014' => 'pso', 'PSO017G6178' => 'pso', 'PSO063G0461' => 'pso', 'PSO063G5024' => 'pso', 'PSO170G5184' => 'pso', 'PSO210G1922' => 'pso', 'PSO357G0378' => 'pso', 'PSO832G0516' => 'pso', 'QL03p008302' => 'qlo', 'QL05p069972' => 'qlo', 'QL09p051777' => 'qlo', 'QL09p052490' => 'qlo', 'RcHm_v2.0_Chr6g0284211' => 'rch', 'Rhsim01G0254100' => 'rsi', 'Rhsim09G0058700' => 'rsi', 'Rhsim13G0047200' => 'rsi', 'Sabra02G0186700' => 'sbr', 'SalBow8G0144' => 'sbo', 'SalBow8G1764' => 'sbo', 'SalBow8G3195' => 'sbo', 'Sc13g0000290' => 'sci', 'Sc17g0002180' => 'sci', 'Sed0007803' => 'sed', 'Sed0008860' => 'sed', 'Sed0014975' => 'sed', 'Sed0020018' => 'sed', 'Sed0022841' => 'sed', 'SEGI_28354' => 'sgi', 'SGA_v2.0_scaffold18G08332' => 'sas', 'SGA_v2.0_scaffold6G03221' => 'sas', 'Solyc06g083390.4' => 'sly', 'Solyc09g059430.3' => 'sly', 'Solyc11g012010.2' => 'sly', 'Solyc12g098440.2' => 'sly', 'Sopen06g034760' => 'spe', 'Sopen09g022570' => 'spe', 'Sopen12g033220' => 'spe', 'Sp3g22670' => 'spa', 'TAR362G1062' => 'tar', 'TAR624G0352' => 'tar', 'TAR629G2023' => 'tar', 'TAR633G2519' => 'tar', 'TAR636G0289' => 'tar', 'THA.LOC104808790' => 'tha', 'THA.LOC104821655' => 'tha', 'Thecc.01G221600' => 'tca', 'Thecc.06G230800' => 'tca', 'Thhalv10002991m.g' => 'esa', 'TPR.G13174' => 'tpr', 'TPR.G17116' => 'tpr', 'TPR.G6437' => 'tpr', 'TWI18G0470' => 'twi', 'TWI36G0241' => 'twi', 'TWI63G0207' => 'twi', 'TWI75G1384' => 'twi', 'unitig_746.g26591' => 'ugi', 'unitig_899.g15413' => 'ugi', 'vmacro00452' => 'vma', 'vmacro02779' => 'vma', 'vmacro14741' => 'vma', 'VMungo0331G2000' => 'vmu', 'VMungo0540G0904' => 'vmu', 'VMungo1383G0545' => 'vmu', 'Zm00001eb085850' => 'zma', 'Zm00001eb210800' => 'zma', 'Zm00001eb420650' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002186' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002186' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002186' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002186' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002186', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p44020' => 'bna', 'Aa31LG8G11940' => 'aar', 'Aa31LG9G4910' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.421' => 'aag', 'Actinidia02329' => 'ach', 'Actinidia09472' => 'ach', 'Actinidia26875' => 'ach', 'Actinidia30059' => 'ach', 'Actinidia31462' => 'ach', 'Actinidia35853' => 'ach', 'AL3G40780' => 'aly', 'Aqoxy1G04163' => 'aox', 'Aqoxy2G03899' => 'aox', 'arahy.Tifrunner.gnm1.ann1.L384WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8DCPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP0H42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEYT15' => 'arhy', 'AT3G25070' => 'ath', 'ATR0069G060' => 'atr', 'ATR1128G106' => 'atr', 'Atru.chr1.2496' => 'acertr', 'Atru.chr10.2307' => 'acertr', 'Atru.chr4.1607' => 'acertr', 'Atru.chr6.1419' => 'acertr', 'AUR62018576' => 'cqu', 'AUR62020840' => 'cqu', 'BcaB06g26730' => 'bca', 'BcaB08g34432' => 'bca', 'BcaC01g03246' => 'bca', 'BcaC06g35778' => 'bca', 'BolC3t17726H' => 'bol', 'BolC7t41569H' => 'bol', 'BraA03t13533Z' => 'bra', 'C03p54390' => 'bna', 'C07p11000' => 'bna', 'CAN.G1186.12' => 'can', 'CAN.G5.47' => 'can', 'CAN.G767.9' => 'can', 'CAN.G874.2' => 'can', 'CANSAT01G0795' => 'cansat', 'CANSAT01G1734' => 'cansat', 'CANSAT56G1175' => 'cansat', 'CARHR101410' => 'chi', 'Carub.0003s2542' => 'cru', 'Ca_06555_v3' => 'car', 'Ca_23229_v3' => 'car', 'Cc01_g16790' => 'ccan', 'Cc03_g08120' => 'ccan', 'Cc09_g01050' => 'ccan', 'CDE02G1477' => 'cde', 'CDE02G2744' => 'cde', 'CDE05G0222' => 'cde', 'CDE05G1168' => 'cde', 'CDE06G1222' => 'cde', 'CDE09G0775' => 'cde', 'Cfa004376' => 'cfa', 'Cfa014948' => 'cfa', 'Ciclev10006122m.g' => 'ccl', 'Ciclev10006483m.g' => 'ccl', 'Ciclev10006802m.g' => 'ccl', 'Ciclev10017621m.g' => 'ccl', 'Ciclev10021726m.g' => 'ccl', 'CiPaw.01G049400' => 'cil', 'CiPaw.01G118400' => 'cil', 'CiPaw.02G022900' => 'cil', 'CiPaw.02G065300' => 'cil', 'CiPaw.10G076200' => 'cil', 'ClCG01G009910' => 'cla', 'ClCG05G003210' => 'cla', 'ClCG09G008810' => 'cla', 'COL.COLO4_15629' => 'col', 'Cpa.g.c44943' => 'cpa', 'Cpa.g.sc8.126' => 'cpa', 'Cpa.g.sc8.127' => 'cpa', 'Cpa.g.sc83.26' => 'cpa', 'CsaV3_1G045860' => 'csa', 'CsaV3_3G010840' => 'csa', 'CsaV3_7G026140' => 'csa', 'CSS0001825' => 'camsi', 'CSS0016091' => 'camsi', 'CSS0016957' => 'camsi', 'CSS0030985' => 'camsi', 'CSS0037554' => 'camsi', 'DCAR_004726' => 'dca', 'DCAR_004869' => 'dca', 'DCAR_012662' => 'dca', 'DCAR_018639' => 'dca', 'DCAR_026635' => 'dca', 'Dinv07382' => 'din', 'Dinv12658' => 'din', 'Dinv13953' => 'din', 'Dinv19181' => 'din', 'Dinv27213' => 'din', 'Dinv38201' => 'din', 'Duzib133G1090' => 'dzi', 'Duzib138G0625' => 'dzi', 'Duzib192G0729' => 'dzi', 'Duzib211G0360' => 'dzi', 'Duzib235G0519' => 'dzi', 'ECA247G1857' => 'eca', 'EL10Ac3g07473' => 'bvu', 'Eucgr.D01380' => 'egr', 'Eucgr.H00779' => 'egr', 'Eucgr.H02736' => 'egr', 'Eucgr.K02142' => 'egr', 'FAN06G1532' => 'fan', 'FAN10G1903' => 'fan', 'FAN15G3260' => 'fan', 'FAN24G2024' => 'fan', 'FAN25G0887' => 'fan', 'FAN27G2350' => 'fan', 'FvH4_2g18650' => 'fve', 'FvH4_3g01180' => 'fve', 'FvH4_7g07170' => 'fve', 'Glyma.03G084000' => 'gma', 'Glyma.07G264500' => 'gma', 'Glyma.08G349500' => 'gma', 'Glyma.09G008700' => 'gma', 'Glyma.16G090700' => 'gma', 'Glyma.17G009600' => 'gma', 'Glyma.18G166800' => 'gma', 'Gohir.A06G152300' => 'ghi', 'Gohir.A06G206201' => 'ghi', 'Gohir.A07G199700' => 'ghi', 'Gohir.A08G195300' => 'ghi', 'Gohir.A10G010350' => 'ghi', 'Gohir.D06G158600' => 'ghi', 'Gohir.D06G215450' => 'ghi', 'Gohir.D07G206100' => 'ghi', 'Gohir.D08G212670' => 'ghi', 'Gorai.001G232400' => 'gra', 'Gorai.004G226600' => 'gra', 'Gorai.010G185300' => 'gra', 'Gorai.010G250900' => 'gra', 'Gorai.011G011000' => 'gra', 'GSVIVG01004747001' => 'vvi', 'GSVIVG01006684001' => 'vvi', 'GSVIVG01007242001' => 'vvi', 'GSVIVG01020994001' => 'vvi', 'HanXRQChr02g0059051' => 'han', 'HanXRQChr07g0189521' => 'han', 'HanXRQChr10g0279471' => 'han', 'HanXRQChr16g0498991' => 'han', 'HanXRQChr16g0516831' => 'han', 'Haze_06894' => 'cav', 'Haze_11636' => 'cav', 'Haze_15037' => 'cav', 'Hma1.2p1_0149F.1_g066350' => 'hma', 'HPP92_000208' => 'vpl', 'HPP92_001411' => 'vpl', 'HPP92_001418' => 'vpl', 'HPP92_008217' => 'vpl', 'HPP92_011652' => 'vpl', 'HPP92_011722' => 'vpl', 'HPP92_013623' => 'vpl', 'HPP92_020221' => 'vpl', 'Hund19000' => 'sun', 'Lalb_Chr01g0022231' => 'lal', 'Lalb_Chr03g0041531' => 'lal', 'Lalb_Chr12g0209931' => 'lal', 'Lalb_Chr19g0125811' => 'lal', 'Lj2A1127T51' => 'lonja', 'Lj3g0021651' => 'lja', 'Lj4g0018163' => 'lja', 'Lj6A454G40' => 'lonja', 'Lj6g0027043' => 'lja', 'Lsat_1_v5_gn_2_46760' => 'lsa', 'Lsat_1_v5_gn_4_62941' => 'lsa', 'Lsat_1_v5_gn_6_60701' => 'lsa', 'Lsat_1_v5_gn_9_15261' => 'lsa', 'Manes.11G000100' => 'mes', 'Manes.12G046800' => 'mes', 'Manes.13G048800' => 'mes', 'Manes.15G055600' => 'mes', 'MBI11_g07441_MAGBIO' => 'mbi', 'MBI19_g29455_MAGBIO' => 'mbi', 'MD05G1172400' => 'mdo', 'MD10G1160600' => 'mdo', 'Medtr2g025170' => 'mtr', 'Medtr7g056147' => 'mtr', 'Medtr8g012960' => 'mtr', 'MELO3C006302.2' => 'cme', 'MELO3C021057.2' => 'cme', 'MELO3C021706.2' => 'cme', 'Migut.D02499' => 'egut', 'Migut.D02500' => 'egut', 'Migut.G00732' => 'egut', 'Migut.M01348' => 'egut', 'Migut.N00628' => 'egut', 'MSTRG.17997' => 'ama', 'MSTRG.20966' => 'ama', 'MSTRG.4236' => 'ama', 'MSTRG.9805' => 'ama', 'Nitab4.5_0000045g0460' => 'nta', 'Nitab4.5_0000143g0470' => 'nta', 'Nitab4.5_0000676g0080' => 'nta', 'Nitab4.5_0000850g0150' => 'nta', 'Nitab4.5_0001198g0300' => 'nta', 'Nitab4.5_0003020g0010' => 'nta', 'Nitab4.5_0007437g0020' => 'nta', 'Nitab4.5_0008794g0020' => 'nta', 'Nn1g07944' => 'nnu', 'Nn3g20042' => 'nnu', 'Oeu002753.1' => 'oeu', 'Oeu009713.1' => 'oeu', 'Oeu023100.1' => 'oeu', 'Oeu025026.1' => 'oeu', 'Oeu031828.1' => 'oeu', 'Oeu037768.2' => 'oeu', 'Oeu049722.1' => 'oeu', 'Os02g0504700' => 'osa', 'Os03g0848600' => 'osa', 'Os04g0379600' => 'osa', 'Os08g0526400' => 'osa', 'Peaxi162Scf00238g00037' => 'pax', 'Peaxi162Scf00517g00623' => 'pax', 'Peaxi162Scf00558g00012' => 'pax', 'Peaxi162Scf00652g00120' => 'pax', 'PGR004G2124' => 'pgr', 'PGR044G0352' => 'pgr', 'PGR083G1505' => 'pgr', 'PGR083G2795' => 'pgr', 'PGSC0003DMG400004571' => 'stu', 'PGSC0003DMG400020099' => 'stu', 'PGSC0003DMG400027945' => 'stu', 'PGSC0003DMG400036375' => 'stu', 'Phvul.006G144600' => 'pvu', 'Phvul.008G130600' => 'pvu', 'Phvul.010G021200' => 'pvu', 'Potri.002G245400' => 'ptr', 'Potri.004G002500' => 'ptr', 'Potri.011G022000' => 'ptr', 'Pp3c14_15740' => 'ppa', 'Pp3c17_17040' => 'ppa', 'Pp3c1_23970' => 'ppa', 'Pp3c2_10900' => 'ppa', 'Prupe.4G013100' => 'ppe', 'Prupe.8G199800' => 'ppe', 'Psat0s3432g0160' => 'psa', 'Psat1g177320' => 'psa', 'Psat3g148160' => 'psa', 'PSO017G2014' => 'pso', 'PSO017G6178' => 'pso', 'PSO063G0461' => 'pso', 'PSO063G5024' => 'pso', 'PSO170G5184' => 'pso', 'PSO210G1922' => 'pso', 'PSO357G0378' => 'pso', 'PSO832G0516' => 'pso', 'QL03p008302' => 'qlo', 'QL05p069972' => 'qlo', 'QL09p051777' => 'qlo', 'QL09p052490' => 'qlo', 'RcHm_v2.0_Chr6g0284211' => 'rch', 'Rhsim01G0254100' => 'rsi', 'Rhsim09G0058700' => 'rsi', 'Rhsim13G0047200' => 'rsi', 'Sabra02G0186700' => 'sbr', 'SalBow8G0144' => 'sbo', 'SalBow8G1764' => 'sbo', 'SalBow8G3195' => 'sbo', 'Sc13g0000290' => 'sci', 'Sc17g0002180' => 'sci', 'Sed0007803' => 'sed', 'Sed0008860' => 'sed', 'Sed0014975' => 'sed', 'Sed0020018' => 'sed', 'Sed0022841' => 'sed', 'SEGI_28354' => 'sgi', 'SGA_v2.0_scaffold18G08332' => 'sas', 'SGA_v2.0_scaffold6G03221' => 'sas', 'Solyc06g083390.4' => 'sly', 'Solyc09g059430.3' => 'sly', 'Solyc11g012010.2' => 'sly', 'Solyc12g098440.2' => 'sly', 'Sopen06g034760' => 'spe', 'Sopen09g022570' => 'spe', 'Sopen12g033220' => 'spe', 'Sp3g22670' => 'spa', 'TAR362G1062' => 'tar', 'TAR624G0352' => 'tar', 'TAR629G2023' => 'tar', 'TAR633G2519' => 'tar', 'TAR636G0289' => 'tar', 'THA.LOC104808790' => 'tha', 'THA.LOC104821655' => 'tha', 'Thecc.01G221600' => 'tca', 'Thecc.06G230800' => 'tca', 'Thhalv10002991m.g' => 'esa', 'TPR.G13174' => 'tpr', 'TPR.G17116' => 'tpr', 'TPR.G6437' => 'tpr', 'TWI18G0470' => 'twi', 'TWI36G0241' => 'twi', 'TWI63G0207' => 'twi', 'TWI75G1384' => 'twi', 'unitig_746.g26591' => 'ugi', 'unitig_899.g15413' => 'ugi', 'vmacro00452' => 'vma', 'vmacro02779' => 'vma', 'vmacro14741' => 'vma', 'VMungo0331G2000' => 'vmu', 'VMungo0540G0904' => 'vmu', 'VMungo1383G0545' => 'vmu', 'Zm00001eb085850' => 'zma', 'Zm00001eb210800' => 'zma', 'Zm00001eb420650' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002186', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002186' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002186', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '307', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002186' ) ), 'genes' => array( 'A03p44020' => 'bna', 'Aa31LG8G11940' => 'aar', 'Aa31LG9G4910' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.421' => 'aag', 'Actinidia02329' => 'ach', 'Actinidia09472' => 'ach', 'Actinidia26875' => 'ach', 'Actinidia30059' => 'ach', 'Actinidia31462' => 'ach', 'Actinidia35853' => 'ach', 'AL3G40780' => 'aly', 'Aqoxy1G04163' => 'aox', 'Aqoxy2G03899' => 'aox', 'arahy.Tifrunner.gnm1.ann1.L384WR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8DCPE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP0H42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEYT15' => 'arhy', 'AT3G25070' => 'ath', 'ATR0069G060' => 'atr', 'ATR1128G106' => 'atr', 'Atru.chr1.2496' => 'acertr', 'Atru.chr10.2307' => 'acertr', 'Atru.chr4.1607' => 'acertr', 'Atru.chr6.1419' => 'acertr', 'AUR62018576' => 'cqu', 'AUR62020840' => 'cqu', 'BcaB06g26730' => 'bca', 'BcaB08g34432' => 'bca', 'BcaC01g03246' => 'bca', 'BcaC06g35778' => 'bca', 'BolC3t17726H' => 'bol', 'BolC7t41569H' => 'bol', 'BraA03t13533Z' => 'bra', 'C03p54390' => 'bna', 'C07p11000' => 'bna', 'CAN.G1186.12' => 'can', 'CAN.G5.47' => 'can', 'CAN.G767.9' => 'can', 'CAN.G874.2' => 'can', 'CANSAT01G0795' => 'cansat', 'CANSAT01G1734' => 'cansat', 'CANSAT56G1175' => 'cansat', 'CARHR101410' => 'chi', 'Carub.0003s2542' => 'cru', 'Ca_06555_v3' => 'car', 'Ca_23229_v3' => 'car', 'Cc01_g16790' => 'ccan', 'Cc03_g08120' => 'ccan', 'Cc09_g01050' => 'ccan', 'CDE02G1477' => 'cde', 'CDE02G2744' => 'cde', 'CDE05G0222' => 'cde', 'CDE05G1168' => 'cde', 'CDE06G1222' => 'cde', 'CDE09G0775' => 'cde', 'Cfa004376' => 'cfa', 'Cfa014948' => 'cfa', 'Ciclev10006122m.g' => 'ccl', 'Ciclev10006483m.g' => 'ccl', 'Ciclev10006802m.g' => 'ccl', 'Ciclev10017621m.g' => 'ccl', 'Ciclev10021726m.g' => 'ccl', 'CiPaw.01G049400' => 'cil', 'CiPaw.01G118400' => 'cil', 'CiPaw.02G022900' => 'cil', 'CiPaw.02G065300' => 'cil', 'CiPaw.10G076200' => 'cil', 'ClCG01G009910' => 'cla', 'ClCG05G003210' => 'cla', 'ClCG09G008810' => 'cla', 'COL.COLO4_15629' => 'col', 'Cpa.g.c44943' => 'cpa', 'Cpa.g.sc8.126' => 'cpa', 'Cpa.g.sc8.127' => 'cpa', 'Cpa.g.sc83.26' => 'cpa', 'CsaV3_1G045860' => 'csa', 'CsaV3_3G010840' => 'csa', 'CsaV3_7G026140' => 'csa', 'CSS0001825' => 'camsi', 'CSS0016091' => 'camsi', 'CSS0016957' => 'camsi', 'CSS0030985' => 'camsi', 'CSS0037554' => 'camsi', 'DCAR_004726' => 'dca', 'DCAR_004869' => 'dca', 'DCAR_012662' => 'dca', 'DCAR_018639' => 'dca', 'DCAR_026635' => 'dca', 'Dinv07382' => 'din', 'Dinv12658' => 'din', 'Dinv13953' => 'din', 'Dinv19181' => 'din', 'Dinv27213' => 'din', 'Dinv38201' => 'din', 'Duzib133G1090' => 'dzi', 'Duzib138G0625' => 'dzi', 'Duzib192G0729' => 'dzi', 'Duzib211G0360' => 'dzi', 'Duzib235G0519' => 'dzi', 'ECA247G1857' => 'eca', 'EL10Ac3g07473' => 'bvu', 'Eucgr.D01380' => 'egr', 'Eucgr.H00779' => 'egr', 'Eucgr.H02736' => 'egr', 'Eucgr.K02142' => 'egr', 'FAN06G1532' => 'fan', 'FAN10G1903' => 'fan', 'FAN15G3260' => 'fan', 'FAN24G2024' => 'fan', 'FAN25G0887' => 'fan', 'FAN27G2350' => 'fan', 'FvH4_2g18650' => 'fve', 'FvH4_3g01180' => 'fve', 'FvH4_7g07170' => 'fve', 'Glyma.03G084000' => 'gma', 'Glyma.07G264500' => 'gma', 'Glyma.08G349500' => 'gma', 'Glyma.09G008700' => 'gma', 'Glyma.16G090700' => 'gma', 'Glyma.17G009600' => 'gma', 'Glyma.18G166800' => 'gma', 'Gohir.A06G152300' => 'ghi', 'Gohir.A06G206201' => 'ghi', 'Gohir.A07G199700' => 'ghi', 'Gohir.A08G195300' => 'ghi', 'Gohir.A10G010350' => 'ghi', 'Gohir.D06G158600' => 'ghi', 'Gohir.D06G215450' => 'ghi', 'Gohir.D07G206100' => 'ghi', 'Gohir.D08G212670' => 'ghi', 'Gorai.001G232400' => 'gra', 'Gorai.004G226600' => 'gra', 'Gorai.010G185300' => 'gra', 'Gorai.010G250900' => 'gra', 'Gorai.011G011000' => 'gra', 'GSVIVG01004747001' => 'vvi', 'GSVIVG01006684001' => 'vvi', 'GSVIVG01007242001' => 'vvi', 'GSVIVG01020994001' => 'vvi', 'HanXRQChr02g0059051' => 'han', 'HanXRQChr07g0189521' => 'han', 'HanXRQChr10g0279471' => 'han', 'HanXRQChr16g0498991' => 'han', 'HanXRQChr16g0516831' => 'han', 'Haze_06894' => 'cav', 'Haze_11636' => 'cav', 'Haze_15037' => 'cav', 'Hma1.2p1_0149F.1_g066350' => 'hma', 'HPP92_000208' => 'vpl', 'HPP92_001411' => 'vpl', 'HPP92_001418' => 'vpl', 'HPP92_008217' => 'vpl', 'HPP92_011652' => 'vpl', 'HPP92_011722' => 'vpl', 'HPP92_013623' => 'vpl', 'HPP92_020221' => 'vpl', 'Hund19000' => 'sun', 'Lalb_Chr01g0022231' => 'lal', 'Lalb_Chr03g0041531' => 'lal', 'Lalb_Chr12g0209931' => 'lal', 'Lalb_Chr19g0125811' => 'lal', 'Lj2A1127T51' => 'lonja', 'Lj3g0021651' => 'lja', 'Lj4g0018163' => 'lja', 'Lj6A454G40' => 'lonja', 'Lj6g0027043' => 'lja', 'Lsat_1_v5_gn_2_46760' => 'lsa', 'Lsat_1_v5_gn_4_62941' => 'lsa', 'Lsat_1_v5_gn_6_60701' => 'lsa', 'Lsat_1_v5_gn_9_15261' => 'lsa', 'Manes.11G000100' => 'mes', 'Manes.12G046800' => 'mes', 'Manes.13G048800' => 'mes', 'Manes.15G055600' => 'mes', 'MBI11_g07441_MAGBIO' => 'mbi', 'MBI19_g29455_MAGBIO' => 'mbi', 'MD05G1172400' => 'mdo', 'MD10G1160600' => 'mdo', 'Medtr2g025170' => 'mtr', 'Medtr7g056147' => 'mtr', 'Medtr8g012960' => 'mtr', 'MELO3C006302.2' => 'cme', 'MELO3C021057.2' => 'cme', 'MELO3C021706.2' => 'cme', 'Migut.D02499' => 'egut', 'Migut.D02500' => 'egut', 'Migut.G00732' => 'egut', 'Migut.M01348' => 'egut', 'Migut.N00628' => 'egut', 'MSTRG.17997' => 'ama', 'MSTRG.20966' => 'ama', 'MSTRG.4236' => 'ama', 'MSTRG.9805' => 'ama', 'Nitab4.5_0000045g0460' => 'nta', 'Nitab4.5_0000143g0470' => 'nta', 'Nitab4.5_0000676g0080' => 'nta', 'Nitab4.5_0000850g0150' => 'nta', 'Nitab4.5_0001198g0300' => 'nta', 'Nitab4.5_0003020g0010' => 'nta', 'Nitab4.5_0007437g0020' => 'nta', 'Nitab4.5_0008794g0020' => 'nta', 'Nn1g07944' => 'nnu', 'Nn3g20042' => 'nnu', 'Oeu002753.1' => 'oeu', 'Oeu009713.1' => 'oeu', 'Oeu023100.1' => 'oeu', 'Oeu025026.1' => 'oeu', 'Oeu031828.1' => 'oeu', 'Oeu037768.2' => 'oeu', 'Oeu049722.1' => 'oeu', 'Os02g0504700' => 'osa', 'Os03g0848600' => 'osa', 'Os04g0379600' => 'osa', 'Os08g0526400' => 'osa', 'Peaxi162Scf00238g00037' => 'pax', 'Peaxi162Scf00517g00623' => 'pax', 'Peaxi162Scf00558g00012' => 'pax', 'Peaxi162Scf00652g00120' => 'pax', 'PGR004G2124' => 'pgr', 'PGR044G0352' => 'pgr', 'PGR083G1505' => 'pgr', 'PGR083G2795' => 'pgr', 'PGSC0003DMG400004571' => 'stu', 'PGSC0003DMG400020099' => 'stu', 'PGSC0003DMG400027945' => 'stu', 'PGSC0003DMG400036375' => 'stu', 'Phvul.006G144600' => 'pvu', 'Phvul.008G130600' => 'pvu', 'Phvul.010G021200' => 'pvu', 'Potri.002G245400' => 'ptr', 'Potri.004G002500' => 'ptr', 'Potri.011G022000' => 'ptr', 'Pp3c14_15740' => 'ppa', 'Pp3c17_17040' => 'ppa', 'Pp3c1_23970' => 'ppa', 'Pp3c2_10900' => 'ppa', 'Prupe.4G013100' => 'ppe', 'Prupe.8G199800' => 'ppe', 'Psat0s3432g0160' => 'psa', 'Psat1g177320' => 'psa', 'Psat3g148160' => 'psa', 'PSO017G2014' => 'pso', 'PSO017G6178' => 'pso', 'PSO063G0461' => 'pso', 'PSO063G5024' => 'pso', 'PSO170G5184' => 'pso', 'PSO210G1922' => 'pso', 'PSO357G0378' => 'pso', 'PSO832G0516' => 'pso', 'QL03p008302' => 'qlo', 'QL05p069972' => 'qlo', 'QL09p051777' => 'qlo', 'QL09p052490' => 'qlo', 'RcHm_v2.0_Chr6g0284211' => 'rch', 'Rhsim01G0254100' => 'rsi', 'Rhsim09G0058700' => 'rsi', 'Rhsim13G0047200' => 'rsi', 'Sabra02G0186700' => 'sbr', 'SalBow8G0144' => 'sbo', 'SalBow8G1764' => 'sbo', 'SalBow8G3195' => 'sbo', 'Sc13g0000290' => 'sci', 'Sc17g0002180' => 'sci', 'Sed0007803' => 'sed', 'Sed0008860' => 'sed', 'Sed0014975' => 'sed', 'Sed0020018' => 'sed', 'Sed0022841' => 'sed', 'SEGI_28354' => 'sgi', 'SGA_v2.0_scaffold18G08332' => 'sas', 'SGA_v2.0_scaffold6G03221' => 'sas', 'Solyc06g083390.4' => 'sly', 'Solyc09g059430.3' => 'sly', 'Solyc11g012010.2' => 'sly', 'Solyc12g098440.2' => 'sly', 'Sopen06g034760' => 'spe', 'Sopen09g022570' => 'spe', 'Sopen12g033220' => 'spe', 'Sp3g22670' => 'spa', 'TAR362G1062' => 'tar', 'TAR624G0352' => 'tar', 'TAR629G2023' => 'tar', 'TAR633G2519' => 'tar', 'TAR636G0289' => 'tar', 'THA.LOC104808790' => 'tha', 'THA.LOC104821655' => 'tha', 'Thecc.01G221600' => 'tca', 'Thecc.06G230800' => 'tca', 'Thhalv10002991m.g' => 'esa', 'TPR.G13174' => 'tpr', 'TPR.G17116' => 'tpr', 'TPR.G6437' => 'tpr', 'TWI18G0470' => 'twi', 'TWI36G0241' => 'twi', 'TWI63G0207' => 'twi', 'TWI75G1384' => 'twi', 'unitig_746.g26591' => 'ugi', 'unitig_899.g15413' => 'ugi', 'vmacro00452' => 'vma', 'vmacro02779' => 'vma', 'vmacro14741' => 'vma', 'VMungo0331G2000' => 'vmu', 'VMungo0540G0904' => 'vmu', 'VMungo1383G0545' => 'vmu', 'Zm00001eb085850' => 'zma', 'Zm00001eb210800' => 'zma', 'Zm00001eb420650' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002186' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002186' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002186' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002186' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151