Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12080 Brassica napus
A03p52420 Brassica napus
A05p24750 Brassica napus
A08p14830 Brassica napus
Aa31LG2G13420 Aethionema arabicum
Aa31LG6G2770 Aethionema arabicum
Aa31LG9G8650 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.175 Anthoceros agrestis
Actinidia03383 Actinidia chinensis
Actinidia09220 Actinidia chinensis
Actinidia25955 Actinidia chinensis
AL1G46790 Arabidopsis lyrata
AL7G33510 Arabidopsis lyrata
AL7G46100 Arabidopsis lyrata
Aqoxy1G01592 Aquilegia oxysepala
Aqoxy3G02428 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0BUM6B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0IDF8B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.14UD5L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1C4AI2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5IH3PY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W74017 Arachis hypogaea
AT1G32540 Arabidopsis thaliana
AT4G20380 Arabidopsis thaliana
ATR0049G006 Amborella trichopoda
ATR1098G036 Amborella trichopoda
Atru.chr6.1743 Acer truncatum
AUR62002695 Chenopodium quinoa
AUR62007267 Chenopodium quinoa
AUR62018732 Chenopodium quinoa
AUR62030152 Chenopodium quinoa
BcaB03g11670 Brassica carinata
BcaB03g13723 Brassica carinata
BcaB07g32950 Brassica carinata
BcaC01g00667 Brassica carinata
BcaC05g27294 Brassica carinata
BcaC05g27295 Brassica carinata
BcaC05g27845 Brassica carinata
BcaC06g34539 Brassica carinata
BcaC09g51342 Brassica carinata
BolC1t01395H Brassica oleracea
BolC3t20573H Brassica oleracea
BolC5t31926H Brassica oleracea
BolC5t32578H Brassica oleracea
BolC7t43273H Brassica oleracea
BolC7t45586H Brassica oleracea
BraA01t01151Z Brassica rapa
BraA03t14321Z Brassica rapa
BraA05t21359Z Brassica rapa
BraA08t33467Z Brassica rapa
C01p14370 Brassica napus
C03p82900 Brassica napus
C05p32010 Brassica napus
C05p38430 Brassica napus
C07p27430 Brassica napus
C07p50880 Brassica napus
CAN.G1659.4 Capsicum annuum
CAN.G215.16 Capsicum annuum
CAN.G79.49 Capsicum annuum
CAN.G954.16 Capsicum annuum
CANSAT21G0404 Cannabis sativa
CANSAT35G1191 Cannabis sativa
CARHR031990 Cardamine hirsuta
CARHR227210 Cardamine hirsuta
Carub.0001s3095 Capsella rubella
Carub.0007s2078 Capsella rubella
Ca_02382_v3 Cicer arietinum L.
Ca_17809_v3 Cicer arietinum L.
Ca_22069_v3 Cicer arietinum L.
Cc06_g12860 Coffea canephora
Cc08_g02490 Coffea canephora
CDE02G0016 Ceratophyllum demersum
CDE02G0659 Ceratophyllum demersum
CDE04G2193 Ceratophyllum demersum
CDE11G1104 Ceratophyllum demersum
CDE12G0478 Ceratophyllum demersum
Cfa012417 Carpinus fangiana
Ciclev10016959m.g Citrus clementina
Ciclev10032940m.g Citrus clementina
CiPaw.09G149400 Carya illinoinensis
CiPaw.10G111300 Carya illinoinensis
CiPaw.11G091900 Carya illinoinensis
CiPaw.12G062200 Carya illinoinensis
ClCG01G025450 Citrullus lanatus
ClCG09G012100 Citrullus lanatus
ClCG10G001750 Citrullus lanatus
COL.COLO4_17064 Corchorus olitorius
Cpa.g.sc71.68 Carica papaya
Cpa.g.sc832.2 Carica papaya
Cre12.g517350 Chlamydomonas reinhardtii
CsaV3_3G049320 Cucumis sativus L.
CsaV3_6G052700 Cucumis sativus L.
CSS0014700 Camellia sinensis var. sinensis
CSS0019083 Camellia sinensis var. sinensis
CSS0019935 Camellia sinensis var. sinensis
DCAR_005621 Daucus carota
DCAR_008280 Daucus carota
DCAR_031773 Daucus carota
Dinv11971 Davidia involucrata
Dinv25201 Davidia involucrata
Dinv28940 Davidia involucrata
Duzib068G1140 Durio zibethinus
Duzib084G0233 Durio zibethinus
Duzib160G0212 Durio zibethinus
Duzib205G1437 Durio zibethinus
ECA240G4730 Erigeron canadensis
ECA246G0769 Erigeron canadensis
EL10Ac5g12143 Beta vulgaris
EL10Ac8g19641 Beta vulgaris
Eucgr.A00512 Eucalyptus grandis
Eucgr.D02186 Eucalyptus grandis
FAN04G1685 Fragaria x ananassa
FAN08G2526 Fragaria x ananassa
FAN13G0992 Fragaria x ananassa
FAN18G3256 Fragaria x ananassa
FAN21G3756 Fragaria x ananassa
FAN25G1398 Fragaria x ananassa
FvH4_5g21750 Fragaria vesca
Glyma.01G199200 Glycine max
Glyma.05G112200 Glycine max
Glyma.08G129400 Glycine max
Glyma.09G083500 Glycine max
Glyma.15G192000 Glycine max
Glyma.17G154800 Glycine max
Glyma.U031408 Glycine max
Gohir.A05G111400 Gossypium hirsutum
Gohir.A06G202300 Gossypium hirsutum
Gohir.A08G157800 Gossypium hirsutum
Gohir.A10G004900 Gossypium hirsutum
Gohir.A12G209100 Gossypium hirsutum
Gohir.D05G111800 Gossypium hirsutum
Gohir.D06G219400 Gossypium hirsutum
Gohir.D08G178100 Gossypium hirsutum
Gohir.D10G004900 Gossypium hirsutum
Gohir.D12G211800 Gossypium hirsutum
Gorai.004G186300 Gossypium raimondii
Gorai.008G227400 Gossypium raimondii
Gorai.009G116000 Gossypium raimondii
Gorai.010G246900 Gossypium raimondii
Gorai.011G005300 Gossypium raimondii
GSVIVG01013190001 Vitis vinifera
GSVIVG01037958001 Vitis vinifera
HanXRQChr03g0084081 Helianthus annuus
HanXRQChr03g0084531 Helianthus annuus
HanXRQChr06g0167381 Helianthus annuus
HanXRQChr10g0308931 Helianthus annuus
HanXRQChr12g0358431 Helianthus annuus
HanXRQChr17g0535891 Helianthus annuus
Haze_05972 Corylus avellana
Haze_08259 Corylus avellana
Hma1.2p1_0991F.1_g245000 Hydrangea macrophylla
Hma1.2p1_0991F.1_g245010 Hydrangea macrophylla
Hma1.2p1_2785F.1_g328493 Hydrangea macrophylla
Hma1.2p1_2785F.1_g328496 Hydrangea macrophylla
HPP92_002590 Vanilla planifolia
HPP92_008981 Vanilla planifolia
HPP92_011023 Vanilla planifolia
HPP92_015683 Vanilla planifolia
HPP92_016666 Vanilla planifolia
Hund11254 Selenicereus undatus
Hund14408 Selenicereus undatus
Hund21537 Selenicereus undatus
Lalb_Chr05g0220561 Lupinus albus
Lalb_Chr07g0185671 Lupinus albus
Lalb_Chr08g0233161 Lupinus albus
Lalb_Chr09g0323861 Lupinus albus
Lalb_Chr09g0329461 Lupinus albus
Lalb_Chr12g0204321 Lupinus albus
Lalb_Chr16g0379171 Lupinus albus
Lalb_Chr16g0386021 Lupinus albus
Lalb_Chr23g0276031 Lupinus albus
Lj2C338T15 Lonicera japonica
Lj2g0015002 Lotus japonicus
Lj4g0013870 Lotus japonicus
Lj4g0018656 Lotus japonicus
Lj6g0027782 Lotus japonicus
Lj8A293T19 Lonicera japonica
Lsat_1_v5_gn_3_16800 Lactuca sativa
Lsat_1_v5_gn_5_84081 Lactuca sativa
Lsat_1_v5_gn_6_78520 Lactuca sativa
Lsat_1_v5_gn_8_68441 Lactuca sativa
Manes.03G069700 Manihot esculenta
Manes.15G169200 Manihot esculenta
Manes.16G062400 Manihot esculenta
Mapoly0103s0036 Marchantia polymorpha
MBI04_g22950_MAGBIO Magnolia biondii
MBI18_g28207_MAGBIO Magnolia biondii
MD05G1263500 Malus domestica
MD06G1032500 Malus domestica
MD10G1241200 Malus domestica
Medtr2g047838 Medicago truncatula
Medtr4g098500 Medicago truncatula
Medtr8g089310 Medicago truncatula
MELO3C003394.2 Cucumis melo
MELO3C007039.2 Cucumis melo
MELO3C032261.2 Cucumis melo
Migut.J01511 Erythranthe guttata
Migut.M01935 Erythranthe guttata
MSTRG.14808 Avicennia marina
MSTRG.16312 Avicennia marina
MSTRG.6246 Avicennia marina
MSTRG.7564 Avicennia marina
Nitab4.5_0000089g0010 Nicotiana tabacum
Nitab4.5_0000378g0080 Nicotiana tabacum
Nitab4.5_0001276g0060 Nicotiana tabacum
Nitab4.5_0001298g0030 Nicotiana tabacum
Nitab4.5_0002373g0010 Nicotiana tabacum
Nitab4.5_0006863g0020 Nicotiana tabacum
Nitab4.5_0016624g0010 Nicotiana tabacum
Nn1g00554 Nelumbo nucifera
Nn6g33618 Nelumbo nucifera
Nn7g37741 Nelumbo nucifera
Oeu000495.1 Olea europaea
Oeu009081.3 Olea europaea
Oeu012647.1 Olea europaea
Oeu052706.2 Olea europaea
Oeu060328.1 Olea europaea
Oeu063150.1 Olea europaea
Os02g0807700 Oryza sativa ssp. japonica
Os03g0639600 Oryza sativa ssp. japonica
Os07g0472200 Oryza sativa ssp. japonica
Os08g0159500 Oryza sativa ssp. japonica
Os12g0611000 Oryza sativa ssp. japonica
Peaxi162Scf00006g04217 Petunia axillaris
Peaxi162Scf00267g00714 Petunia axillaris
PGR031G1675 Punica granatum
PGR083G1218 Punica granatum
PGSC0003DMG400017509 Solanum tuberosum
PGSC0003DMG400021196 Solanum tuberosum
Phvul.002G006500 Phaseolus vulgaris
Phvul.002G252000 Phaseolus vulgaris
Phvul.003G230100 Phaseolus vulgaris
Potri.001G143900 Populus trichocarpa
Potri.001G442400 Populus trichocarpa
Potri.003G090300 Populus trichocarpa
Potri.011G154800 Populus trichocarpa
Pp3c11_12260 Physcomitrium patens
Pp3c7_12740 Physcomitrium patens
Prupe.4G102000 Prunus persica
Prupe.5G039600 Prunus persica
Psat1g019560 Pisum sativum
Psat4g078920 Pisum sativum
Psat7g060840 Pisum sativum
PSO063G6597 Papaver somniferum
PSO541G1019 Papaver somniferum
PSO675G6382 Papaver somniferum
PSO782G2839 Papaver somniferum
QL05p063069 Quercus lobata
QL12p006090 Quercus lobata
RcHm_v2.0_Chr5g0018361 Rosa chinensis
RcHm_v2.0_Chr7g0209241 Rosa chinensis
Rhsim02G0167700 Rhododendron simsii
Rhsim07G0125400 Rhododendron simsii
Rhsim11G0013500 Rhododendron simsii
RhsimUnG0090000 Rhododendron simsii
Sabra01G0112300 Salix brachista
Sabra16G0299000 Salix brachista
Sabra16G0299100 Salix brachista
Sabra16G0300900 Salix brachista
SalBow6G3328 Salvia bowleyana
SalBow7G0802 Salvia bowleyana
SalBow8G2330 Salvia bowleyana
SalBow8G3701 Salvia bowleyana
Sc01g0007530 Simmondsia chinensis
Sc22g0001600 Simmondsia chinensis
Sed0010270 Sechium edule
Sed0010675 Sechium edule
Sed0014106 Sechium edule
SEGI_34632 Sequoiadendron giganteum
SGA_v2.0_scaffold194G40743 Striga asiatica
SGA_v2.0_scaffold298G47631 Striga asiatica
SGA_v2.0_scaffold51G18667 Striga asiatica
SGA_v2.0_scaffold69G23248 Striga asiatica
SMO340G0004 Selaginella moellendorffii
SMO358G0140 Selaginella moellendorffii
Solyc02g069720.3 Solanum lycopersicum
Solyc08g077060.3 Solanum lycopersicum
Sopen02g009420 Solanum pennellii
Sopen02g018840 Solanum pennellii
Sopen08g025640 Solanum pennellii
Sp1g28360 Schrenkiella parvula
Sp2g09350 Schrenkiella parvula
Sp7g18750 Schrenkiella parvula
TAR375G0648 Trochodendron aralioides
TAR626G1147 Trochodendron aralioides
TAR627G0773 Trochodendron aralioides
TAR629G1185 Trochodendron aralioides
TAR636G2841 Trochodendron aralioides
THA.LOC104807958 Tarenaya hassleriana
THA.LOC104812036 Tarenaya hassleriana
THA.LOC104812929 Tarenaya hassleriana
THA.LOC104814438 Tarenaya hassleriana
Thecc.03G230200 Theobroma cacao
Thecc.06G005100 Theobroma cacao
Thhalv10001047m.g Eutrema salsugineum
Thhalv10008989m.g Eutrema salsugineum
Thhalv10026533m.g Eutrema salsugineum
TPR.G29031 Trifolium pratense
TPR.G624 Trifolium pratense
TPR.G625 Trifolium pratense
TPR.G6267 Trifolium pratense
TWI15G0128 Tripterygium wilfordii
TWI15G0245 Tripterygium wilfordii
TWI60G0691 Tripterygium wilfordii
TWI63G1074 Tripterygium wilfordii
TWI81G0312 Tripterygium wilfordii
unitig_60.g25492 Utricularia gibba
vmacro10995 Vaccinium macrocarpon
VMungo0251G0598 Vigna mungo
VMungo0251G3642 Vigna mungo
VMungo1215G1237 Vigna mungo
Zm00001eb050760 Zea mays
Zm00001eb135920 Zea mays
Zm00001eb172290 Zea mays

User provided reference genes

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