Gene: AT1G32540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G32540
  • Transcript Identifier AT1G32540.3
  • Gene Type Coding gene
  • Location Chr1 : 11768043-11769591 : positive

Gene Family Information

  • ID HOM05D002138
  • #Genes/#Species 314/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G32540.3
  • symbol LOL1
  • uniprot Q93ZB1

Descriptions

  • Description lsd one like 1
  • Computational description lsd one like 1 (LOL1); FUNCTIONS IN: DNA binding; INVOLVED IN: induction of apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LSD1 zinc finger family protein (TAIR:AT4G20380.7); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Computational description lsd one like 1 (LOL1); FUNCTIONS IN: DNA binding; INVOLVED IN: induction of apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LSD1 zinc finger family protein (TAIR:AT4G20380.7); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034052
IMP
Gene Ontologypositive regulation of plant-type hypersensitive response1
GO:0043068
IMP
Gene Ontologypositive regulation of programmed cell death1
GO:0098542
IMP
Gene Ontologydefense response to other organism1
GO:2000121
IMP
Gene Ontologyregulation of removal of superoxide radicals1
GO:0006952
IEA
GOA Databasedefense response
GO:0009626
IEA
GOA Databaseplant-type hypersensitive response
GO:0034051
ISO
PLAZA Integrative Orthologynegative regulation of plant-type hypersensitive response Os08g0159500
GO:0045595
ISO
PLAZA Integrative Orthologyregulation of cell differentiation Os08g0159500
GO:0031348
ISO
PLAZA Integrative Orthologynegative regulation of defense response Os08g0159500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
ISS
Gene OntologyDNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005735 Zinc finger, LSD1-type
IPR040319 LSD1-like
Mapman id Description
27.2.1 Multi-process regulation.Programmed Cell Death (PCD) system.PCD regulatory protein (LSD/LOL)