Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p17470 Brassica napus
A04p05110 Brassica napus
A04p05140 Brassica napus
A05p14470 Brassica napus
Aa31LG1G7150 Aethionema arabicum
Aa31LG5G5680 Aethionema arabicum
Aa31sc13G110 Aethionema arabicum
Actinidia08367 Actinidia chinensis
Actinidia08529 Actinidia chinensis
Actinidia12889 Actinidia chinensis
Actinidia12890 Actinidia chinensis
Actinidia35152 Actinidia chinensis
Ah.02g111880 Amaranthus hybridus
Ah.02g125670 Amaranthus hybridus
Ah.11g049640 Amaranthus hybridus
AL4G26490 Arabidopsis lyrata
AL4G26500 Arabidopsis lyrata
AL5G35790 Arabidopsis lyrata
Aqoxy2G03277 Aquilegia oxysepala
Aqoxy2G03628 Aquilegia oxysepala
Aqoxy2G03864 Aquilegia oxysepala
Aqoxy3G04326 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.49XCUQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5K77QF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D45Y0C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JNVS5M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JT4IXE Arachis hypogaea
AT2G31270 Arabidopsis thaliana
AT3G54710 Arabidopsis thaliana
ATR0124G038 Amborella trichopoda
ATR0680G370 Amborella trichopoda
ATR0804G042 Amborella trichopoda
Atru.chr5.1647 Acer truncatum
Atru.chr9.3 Acer truncatum
AUR62001297 Chenopodium quinoa
AUR62003976 Chenopodium quinoa
AUR62011890 Chenopodium quinoa
AUR62024731 Chenopodium quinoa
AUR62025682 Chenopodium quinoa
AUR62034150 Chenopodium quinoa
AUR62040269 Chenopodium quinoa
BcaB01g04051 Brassica carinata
BcaB02g08453 Brassica carinata
BcaB02g10368 Brassica carinata
BcaB06g28439 Brassica carinata
BcaB06g28440 Brassica carinata
BcaB06g28521 Brassica carinata
BcaC01g05962 Brassica carinata
BcaC01g05963 Brassica carinata
BcaC02g09048 Brassica carinata
BcaC02g09697 Brassica carinata
BcaC02g09698 Brassica carinata
BcaC02g11206 Brassica carinata
BolC3t14459H Brassica oleracea
BolC4t23457H Brassica oleracea
BolC4t25326H Brassica oleracea
BolC4t25356H Brassica oleracea
BolC4t27569H Brassica oleracea
BraA03t11020Z Brassica rapa
BraA04t16222Z Brassica rapa
BraA04t16223Z Brassica rapa
BraA05t20376Z Brassica rapa
C03p20650 Brassica napus
C04p19240 Brassica napus
C04p37610 Brassica napus
C04p37800 Brassica napus
C04p60780 Brassica napus
CAN.G140.25 Capsicum annuum
CAN.G1449.8 Capsicum annuum
CAN.G861.34 Capsicum annuum
CANSAT25G3490 Cannabis sativa
CARHR124860 Cardamine hirsuta
CARHR164630 Cardamine hirsuta
Carub.0004s1254 Capsella rubella
Carub.0004s1255 Capsella rubella
Carub.0005s2131 Capsella rubella
Ca_02949_v3 Cicer arietinum L.
Ca_09690_v3 Cicer arietinum L.
Ca_25375_v3 Cicer arietinum L.
Cc01_g18450 Coffea canephora
CDE02G0592 Ceratophyllum demersum
CDE03G0488 Ceratophyllum demersum
CDE06G0319 Ceratophyllum demersum
CDE06G2251 Ceratophyllum demersum
CDE06G2366 Ceratophyllum demersum
Cfa002408 Carpinus fangiana
Ciclev10019292m.g Citrus clementina
Ciclev10023500m.g Citrus clementina
CiPaw.03G262500 Carya illinoinensis
CiPaw.04G185600 Carya illinoinensis
ClCG01G014740 Citrullus lanatus
ClCG07G000960 Citrullus lanatus
COL.COLO4_05172 Corchorus olitorius
COL.COLO4_09059 Corchorus olitorius
Cpa.g.sc233.13 Carica papaya
Cpa.g.sc50.34 Carica papaya
CsaV3_1G007580 Cucumis sativus L.
CsaV3_3G022530 Cucumis sativus L.
CsaV3_3G022540 Cucumis sativus L.
CsaV3_3G043220 Cucumis sativus L.
CsaV3_7G024450 Cucumis sativus L.
CsaV3_7G024470 Cucumis sativus L.
CSS0017054 Camellia sinensis var. sinensis
CSS0040412 Camellia sinensis var. sinensis
CSS0041134 Camellia sinensis var. sinensis
DCAR_005699 Daucus carota
DCAR_011408 Daucus carota
Dinv03503 Davidia involucrata
Dinv03504 Davidia involucrata
Dinv22417 Davidia involucrata
Dinv34608 Davidia involucrata
Duzib133G1121 Durio zibethinus
Duzib138G0341 Durio zibethinus
ECA232G3429 Erigeron canadensis
ECA234G1486 Erigeron canadensis
ECA247G3646 Erigeron canadensis
EL10Ac5g10416 Beta vulgaris
EL10Ac6g15650 Beta vulgaris
EL10Ac7g18099 Beta vulgaris
Eucgr.K02324 Eucalyptus grandis
Eucgr.K02327 Eucalyptus grandis
Eucgr.K03269 Eucalyptus grandis
FAN04G0734 Fragaria x ananassa
FAN13G1499 Fragaria x ananassa
FAN13G2546 Fragaria x ananassa
FAN15G1144 Fragaria x ananassa
FAN18G3146 Fragaria x ananassa
FAN24G0479 Fragaria x ananassa
FAN24G0861 Fragaria x ananassa
FAN24G3033 Fragaria x ananassa
FAN27G2113 Fragaria x ananassa
FAN27G3115 Fragaria x ananassa
FAN27G3355 Fragaria x ananassa
FvH4_2g21720 Fragaria vesca
FvH4_2g21760 Fragaria vesca
FvH4_5g18520 Fragaria vesca
Glyma.06G062500 Glycine max
Glyma.09G162100 Glycine max
Glyma.10G035700 Glycine max
Glyma.13G122100 Glycine max
Glyma.16G211300 Glycine max
Gohir.A07G211800 Gossypium hirsutum
Gohir.A11G129800 Gossypium hirsutum
Gohir.D07G218000 Gossypium hirsutum
Gohir.D11G135500 Gossypium hirsutum
Gorai.001G252100 Gossypium raimondii
Gorai.007G145100 Gossypium raimondii
GSVIVG01024251001 Vitis vinifera
GSVIVG01028303001 Vitis vinifera
HanXRQChr09g0238381 Helianthus annuus
HanXRQChr10g0281071 Helianthus annuus
HanXRQChr15g0467931 Helianthus annuus
Haze_18411 Corylus avellana
Haze_24608 Corylus avellana
Hma1.2p1_0273F.1_g109850 Hydrangea macrophylla
HPP92_007157 Vanilla planifolia
HPP92_020716 Vanilla planifolia
Hund02906 Selenicereus undatus
Hund09595 Selenicereus undatus
Hund16384 Selenicereus undatus
Lalb_Chr02g0152301 Lupinus albus
Lalb_Chr21g0313811 Lupinus albus
Lalb_Chr24g0398621 Lupinus albus
Lj2C1154T3 Lonicera japonica
Lj2g0000158 Lotus japonicus
Lj5g0022506 Lotus japonicus
Lsat_1_v5_gn_9_10441 Lactuca sativa
Lsat_1_v5_gn_9_45881 Lactuca sativa
Lsat_1_v5_gn_9_8740 Lactuca sativa
Manes.02G219400 Manihot esculenta
Manes.04G076400 Manihot esculenta
Manes.12G031300 Manihot esculenta
Mapoly0095s0052 Marchantia polymorpha
MBI06_g12554_MAGBIO Magnolia biondii
MBI17_g07969_MAGBIO Magnolia biondii
MBI19_g26812_MAGBIO Magnolia biondii
MD05G1158100 Malus domestica
MD05G1191300 Malus domestica
MD05G1191600 Malus domestica
MD05G1199700 Malus domestica
MD10G1150800 Malus domestica
MD10G1150900 Malus domestica
MD10G1178300 Malus domestica
Medtr1g070170 Medicago truncatula
Medtr6g077630 Medicago truncatula
Medtr6g077680 Medicago truncatula
Medtr6g078920 Medicago truncatula
Medtr6g078940 Medicago truncatula
Medtr6g078950 Medicago truncatula
Medtr6g078990 Medicago truncatula
Medtr6g079130 Medicago truncatula
Medtr6g477680 Medicago truncatula
MELO3C002178.2 Cucumis melo
MELO3C012906.2 Cucumis melo
MELO3C019257.2 Cucumis melo
MELO3C023727.2 Cucumis melo
Migut.K00217 Erythranthe guttata
Migut.O00276 Erythranthe guttata
MSTRG.18315 Avicennia marina
MSTRG.21501 Avicennia marina
MSTRG.23216 Avicennia marina
Nitab4.5_0000086g0110 Nicotiana tabacum
Nitab4.5_0000326g0050 Nicotiana tabacum
Nitab4.5_0000326g0060 Nicotiana tabacum
Nitab4.5_0000326g0070 Nicotiana tabacum
Nitab4.5_0001327g0080 Nicotiana tabacum
Nitab4.5_0001495g0080 Nicotiana tabacum
Nitab4.5_0005119g0030 Nicotiana tabacum
Nitab4.5_0005477g0030 Nicotiana tabacum
Nitab4.5_0009021g0010 Nicotiana tabacum
Nn1g02724 Nelumbo nucifera
Nn1g03410 Nelumbo nucifera
Nn2g14024 Nelumbo nucifera
Nn3g18553 Nelumbo nucifera
Oeu025836.1 Olea europaea
Oeu057515.1 Olea europaea
Oeu060955.2 Olea europaea
Os01g0184200 Oryza sativa ssp. japonica
Os04g0185100 Oryza sativa ssp. japonica
Os10g0489900 Oryza sativa ssp. japonica
Peaxi162Scf00018g02016 Petunia axillaris
Peaxi162Scf00134g00713 Petunia axillaris
Peaxi162Scf00171g00130 Petunia axillaris
Peaxi162Scf00441g00218 Petunia axillaris
PGR044G0590 Punica granatum
PGR044G1008 Punica granatum
PGSC0003DMG400010892 Solanum tuberosum
PGSC0003DMG400015216 Solanum tuberosum
Phvul.007G194400 Phaseolus vulgaris
Phvul.009G001100 Phaseolus vulgaris
Potri.002G040100 Populus trichocarpa
Potri.004G067700 Populus trichocarpa
Potri.005G222700 Populus trichocarpa
Pp3c18_4420 Physcomitrium patens
Pp3c19_14180 Physcomitrium patens
Pp3c19_14181 Physcomitrium patens
Pp3c22_17580 Physcomitrium patens
Prupe.5G244700 Prunus persica
Prupe.8G189500 Prunus persica
Prupe.8G198500 Prunus persica
Prupe.8G217800 Prunus persica
Prupe.8G225500 Prunus persica
Psat3g187520 Pisum sativum
Psat6g055280 Pisum sativum
PSO013G0155 Papaver somniferum
PSO063G6231 Papaver somniferum
PSO161G0125 Papaver somniferum
PSO170G3910 Papaver somniferum
PSO478G1725 Papaver somniferum
PSO782G1277 Papaver somniferum
PSO782G2204 Papaver somniferum
PSO782G4650 Papaver somniferum
PSO832G1516 Papaver somniferum
QL02p059458 Quercus lobata
QL02p090766 Quercus lobata
QL03p020315 Quercus lobata
QL09p009162 Quercus lobata
QL09p035049 Quercus lobata
QL09p038209 Quercus lobata
RcHm_v2.0_Chr6g0288401 Rosa chinensis
RcHm_v2.0_Chr7g0176981 Rosa chinensis
Rhsim01G0265300 Rhododendron simsii
Rhsim02G0234000 Rhododendron simsii
Rhsim13G0033900 Rhododendron simsii
Sabra02G0032100 Salix brachista
Sabra04G0045400 Salix brachista
Sabra05G0171400 Salix brachista
SalBow1G3741 Salvia bowleyana
SalBow5G1818 Salvia bowleyana
SalBow5G3643 Salvia bowleyana
Sc05g0000730 Simmondsia chinensis
Sc05g0000740 Simmondsia chinensis
Sc10g0003680 Simmondsia chinensis
Sc10g0003690 Simmondsia chinensis
Sed0018460 Sechium edule
Sed0021425 Sechium edule
Sed0024965 Sechium edule
SEGI_02658 Sequoiadendron giganteum
SEGI_27913 Sequoiadendron giganteum
SEGI_38270 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35250 Striga asiatica
SGA_v2.0_scaffold25G10733 Striga asiatica
SHI09839 Sapria himalayana
SMO364G0709 Selaginella moellendorffii
Solyc01g006140.4 Solanum lycopersicum
Solyc03g019960.3 Solanum lycopersicum
Solyc06g008510.3 Solanum lycopersicum
Sopen01g002140 Solanum pennellii
Sopen03g029660 Solanum pennellii
Sopen06g003280 Solanum pennellii
Sp4g13750 Schrenkiella parvula
Sp5g07740 Schrenkiella parvula
TAR362G0949 Trochodendron aralioides
TAR629G0741 Trochodendron aralioides
TAR633G0639 Trochodendron aralioides
THA.LOC104800876 Tarenaya hassleriana
THA.LOC104825264 Tarenaya hassleriana
THA.LOC104826211 Tarenaya hassleriana
Thecc.01G260600 Theobroma cacao
Thhalv10010331m.g Eutrema salsugineum
Thhalv10016441m.g Eutrema salsugineum
TPR.G24682 Trifolium pratense
TPR.G31632 Trifolium pratense
TPR.G3552 Trifolium pratense
TWI12G1429 Tripterygium wilfordii
TWI75G1405 Tripterygium wilfordii
TWI81G0920 Tripterygium wilfordii
unitig_0.g777 Utricularia gibba
unitig_22.g5321 Utricularia gibba
vmacro02652 Vaccinium macrocarpon
vmacro14841 Vaccinium macrocarpon
vmacro17191 Vaccinium macrocarpon
VMungo0720G2946 Vigna mungo
VMungo1309G0860 Vigna mungo
VMungo1309G2434 Vigna mungo
Zm00001eb044980 Zea mays
Zm00001eb068330 Zea mays
Zm00001eb377000 Zea mays
Zm00001eb432300 Zea mays

User provided reference genes

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