Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00410 Brassica napus
A01p00420 Brassica napus
A04p16530 Brassica napus
A06p41650 Brassica napus
Aa31LG6G15670 Aethionema arabicum
Aa31LG7G14710 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1659 Anthoceros agrestis
Actinidia05871 Actinidia chinensis
Actinidia15623 Actinidia chinensis
Actinidia16044 Actinidia chinensis
Actinidia28548 Actinidia chinensis
Actinidia33808 Actinidia chinensis
Ah.03g141350 Amaranthus hybridus
Ah.06g181270 Amaranthus hybridus
Ah.14g080510 Amaranthus hybridus
Ah.14g080550 Amaranthus hybridus
Ah.14g080580 Amaranthus hybridus
AL4G11260 Arabidopsis lyrata
AL5G15880 Arabidopsis lyrata
AL7G11580 Arabidopsis lyrata
Aqoxy6G00470 Aquilegia oxysepala
Aqoxy6G00741 Aquilegia oxysepala
Aqoxy7G04094 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.05U4MR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1DD10A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.25HRTQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.91QE12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A4G237 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4JDZB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JNA5NA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MN9CK9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q0PIRU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q3FUVQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WB0Z4U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WG85QS Arachis hypogaea
AT2G21940 Arabidopsis thaliana
AT3G26900 Arabidopsis thaliana
AT4G39540 Arabidopsis thaliana
ATR0564G104 Amborella trichopoda
ATR0582G150 Amborella trichopoda
Atru.chr1.769 Acer truncatum
Atru.chr13.1953 Acer truncatum
Atru.chr4.367 Acer truncatum
Atru.chr6.2623 Acer truncatum
Atru.chr7.2034_Atru.chr7.2035 Acer truncatum
AUR62003305 Chenopodium quinoa
AUR62003388 Chenopodium quinoa
AUR62016280 Chenopodium quinoa
AUR62029440 Chenopodium quinoa
AUR62044024 Chenopodium quinoa
BcaB06g27797 Brassica carinata
BcaC02g08751 Brassica carinata
BcaC06g31038 Brassica carinata
BcaC06g33878 Brassica carinata
BcaNung00872 Brassica carinata
BcaNung05810 Brassica carinata
BolC1t00059H Brassica oleracea
BolC1t00605H Brassica oleracea
BolC4t26699H Brassica oleracea
BolC7t44114H Brassica oleracea
BraA01t00050Z Brassica rapa
BraA04t17289Z Brassica rapa
BraA06t27090Z Brassica rapa
C01p00580 Brassica napus
C01p06090 Brassica napus
C04p51060 Brassica napus
C07p35970 Brassica napus
CAN.G347.5 Capsicum annuum
CAN.G473.144 Capsicum annuum
CAN.G767.8 Capsicum annuum
CANSAT01G1563 Cannabis sativa
CANSAT21G0083 Cannabis sativa
CANSAT64G2952 Cannabis sativa
CARHR113020 Cardamine hirsuta
CARHR147990 Cardamine hirsuta
CARHR247190 Cardamine hirsuta
Carub.0004s0108 Capsella rubella
Carub.0005s0499 Capsella rubella
Carub.0007s0141 Capsella rubella
Ca_13999_v3 Cicer arietinum L.
Ca_17695_v3 Cicer arietinum L.
Ca_28790_v3 Cicer arietinum L.
CBR_g2957 Chara braunii
Cc07_g01110 Coffea canephora
Cc07_g16270 Coffea canephora
CDE04G1180 Ceratophyllum demersum
CDE06G1358 Ceratophyllum demersum
Cfa002756 Carpinus fangiana
Cfa007188 Carpinus fangiana
Cfa018248 Carpinus fangiana
Ciclev10002077m.g Citrus clementina
Ciclev10017811m.g Citrus clementina
Ciclev10026159m.g Citrus clementina
CiPaw.03G004100 Carya illinoinensis
CiPaw.03G134200 Carya illinoinensis
CiPaw.15G010500 Carya illinoinensis
CiPaw.16G006300 Carya illinoinensis
ClCG01G016150 Citrullus lanatus
ClCG02G001040 Citrullus lanatus
ClCG05G013940 Citrullus lanatus
COL.COLO4_11010 Corchorus olitorius
COL.COLO4_13320 Corchorus olitorius
Cpa.g.sc191.4 Carica papaya
Cpa.g.sc70.100 Carica papaya
Cre10.g436350 Chlamydomonas reinhardtii
CsaV3_2G017660 Cucumis sativus L.
CsaV3_3G026420 Cucumis sativus L.
CsaV3_6G042420 Cucumis sativus L.
CSS0000213 Camellia sinensis var. sinensis
CSS0010657 Camellia sinensis var. sinensis
CSS0016053 Camellia sinensis var. sinensis
CSS0024356 Camellia sinensis var. sinensis
CSS0033841 Camellia sinensis var. sinensis
CSS0038320 Camellia sinensis var. sinensis
CSS0043862 Camellia sinensis var. sinensis
CSS0046386 Camellia sinensis var. sinensis
CSS0049201 Camellia sinensis var. sinensis
DCAR_001370 Daucus carota
DCAR_002948 Daucus carota
Dinv00699 Davidia involucrata
Dinv19485 Davidia involucrata
Dinv25630 Davidia involucrata
Dinv41011 Davidia involucrata
Dinv42694 Davidia involucrata
Duzib147G0681 Durio zibethinus
Duzib147G1576 Durio zibethinus
Duzib264G0944 Durio zibethinus
Duzib264G1213 Durio zibethinus
ECA238G0118 Erigeron canadensis
ECA246G3653 Erigeron canadensis
EL10Ac6g13583 Beta vulgaris
EL10Ac6g15457 Beta vulgaris
Eucgr.F02664 Eucalyptus grandis
Eucgr.I00321 Eucalyptus grandis
Eucgr.I01618 Eucalyptus grandis
FAN02G0214 Fragaria x ananassa
FAN02G2522 Fragaria x ananassa
FAN19G1247 Fragaria x ananassa
FAN23G2242 Fragaria x ananassa
FAN26G2241 Fragaria x ananassa
FAN28G1652 Fragaria x ananassa
FvH4_6g54030 Fragaria vesca
Glyma.02G073000 Glycine max
Glyma.04G219200 Glycine max
Glyma.04G219300 Glycine max
Glyma.05G183700 Glycine max
Glyma.06G146566 Glycine max
Glyma.06G146632 Glycine max
Glyma.08G141500 Glycine max
Glyma.16G154300 Glycine max
Gohir.A05G335200 Gossypium hirsutum
Gohir.A11G198100 Gossypium hirsutum
Gohir.A12G255300 Gossypium hirsutum
Gohir.D04G074000 Gossypium hirsutum
Gohir.D11G233600 Gossypium hirsutum
Gohir.D12G256700 Gossypium hirsutum
Gorai.001G128000 Gossypium raimondii
Gorai.007G244500 Gossypium raimondii
Gorai.008G274900 Gossypium raimondii
Gorai.012G083400 Gossypium raimondii
Gorai.013G051300 Gossypium raimondii
GSVIVG01013668001 Vitis vinifera
GSVIVG01022229001 Vitis vinifera
GSVIVG01024319001 Vitis vinifera
GSVIVG01033029001 Vitis vinifera
HanXRQChr07g0189951 Helianthus annuus
HanXRQChr14g0451291 Helianthus annuus
HanXRQChr15g0477681 Helianthus annuus
Haze_14920 Corylus avellana
Haze_17849 Corylus avellana
Haze_25044 Corylus avellana
Hma1.2p1_0276F.1_g111080 Hydrangea macrophylla
Hma1.2p1_0525F.1_g172690 Hydrangea macrophylla
Hma1.2p1_0525F.1_g172700 Hydrangea macrophylla
HPP92_013369 Vanilla planifolia
HPP92_013371 Vanilla planifolia
HPP92_023003 Vanilla planifolia
Hund04252 Selenicereus undatus
Hund19655 Selenicereus undatus
Lalb_Chr02g0156741 Lupinus albus
Lalb_Chr12g0203521 Lupinus albus
Lalb_Chr13g0296211 Lupinus albus
Lj1g0007236 Lotus japonicus
Lj1g0011600 Lotus japonicus
Lj4C866G0 Lonicera japonica
Lj4C868G5 Lonicera japonica
Lj4C925G5 Lonicera japonica
Lj4g0006731 Lotus japonicus
Lju41A59G25 Lonicera japonica
Lsat_1_v5_gn_2_94641 Lactuca sativa
Lsat_1_v5_gn_3_54081 Lactuca sativa
Lsat_1_v5_gn_8_41580 Lactuca sativa
Manes.11G079700 Manihot esculenta
Manes.12G142800 Manihot esculenta
Manes.13G076034 Manihot esculenta
Mapoly0035s0139 Marchantia polymorpha
Mapoly0089s0033 Marchantia polymorpha
MBI02_g18924_MAGBIO Magnolia biondii
MBI05_g00332_MAGBIO Magnolia biondii
MCO12G135 Micromonas commoda
MD01G1019500 Malus domestica
MD09G1006100 Malus domestica
MD15G1332900 Malus domestica
MD17G1010100 Malus domestica
Medtr6g033510 Medicago truncatula
MELO3C007485.2 Cucumis melo
MELO3C014943.2 Cucumis melo
MELO3C020958.2 Cucumis melo
MELO3C033348.2 Cucumis melo
Migut.F00029 Erythranthe guttata
Migut.H02438 Erythranthe guttata
MSTRG.24115 Avicennia marina
MSTRG.2530 Avicennia marina
Nitab4.5_0000519g0190 Nicotiana tabacum
Nitab4.5_0000904g0020 Nicotiana tabacum
Nitab4.5_0002172g0060 Nicotiana tabacum
Nitab4.5_0005865g0050 Nicotiana tabacum
Nn4g22205 Nelumbo nucifera
Nn5g28902 Nelumbo nucifera
Oeu020404.1 Olea europaea
Oeu028369.1 Olea europaea
Oeu031975.1 Olea europaea
Os01g0102600 Oryza sativa ssp. japonica
Os02g0749300 Oryza sativa ssp. japonica
Os04g0640600 Oryza sativa ssp. japonica
Os06g0225800 Oryza sativa ssp. japonica
Peaxi162Scf00359g00118 Petunia axillaris
Peaxi162Scf00420g00742 Petunia axillaris
PGR004G2752 Punica granatum
PGR042G2519 Punica granatum
PGR142G2649 Punica granatum
PGSC0003DMG400016553 Solanum tuberosum
PGSC0003DMG401020240 Solanum tuberosum
Phvul.002G264800 Phaseolus vulgaris
Phvul.004G081400 Phaseolus vulgaris
Potri.002G061100 Populus trichocarpa
Potri.005G084600 Populus trichocarpa
Potri.007G081000 Populus trichocarpa
Potri.017G062800 Populus trichocarpa
Pp3c10_4890 Physcomitrium patens
Pp3c13_16180 Physcomitrium patens
Pp3c6_23100 Physcomitrium patens
PRCOL_00002616 Prasinoderma coloniale
Prupe.3G310900 Prunus persica
Prupe.6G172800 Prunus persica
Psat0s3864g0040 Pisum sativum
Psat7g051520 Pisum sativum
PSO017G0529 Papaver somniferum
PSO170G0472 Papaver somniferum
PSO170G5931 Papaver somniferum
PSO478G0158 Papaver somniferum
PSO541G4291 Papaver somniferum
PSO675G1375 Papaver somniferum
PSO832G3456 Papaver somniferum
QL02p035413 Quercus lobata
QL02p070430 Quercus lobata
QL06p032113 Quercus lobata
RcHm_v2.0_Chr2g0116491 Rosa chinensis
RcHm_v2.0_Chr2g0116501 Rosa chinensis
RcHm_v2.0_Chr2g0116521 Rosa chinensis
RcHm_v2.0_Chr2g0176211 Rosa chinensis
RcHm_v2.0_Chr6g0259311 Rosa chinensis
Rhsim10G0003000 Rhododendron simsii
Rhsim10G0150100 Rhododendron simsii
Rhsim11G0089700 Rhododendron simsii
Sabra05G0069700 Salix brachista
Sabra07G0068000 Salix brachista
Sabra17G0056500 Salix brachista
SalBow6G0726 Salvia bowleyana
Sc07g0003600 Simmondsia chinensis
Sc22g0001550 Simmondsia chinensis
Sc22g0001560 Simmondsia chinensis
Sed0006253 Sechium edule
Sed0006299 Sechium edule
Sed0018279 Sechium edule
SEGI_03566 Sequoiadendron giganteum
SEGI_04951 Sequoiadendron giganteum
SEGI_20315 Sequoiadendron giganteum
SEGI_36463 Sequoiadendron giganteum
SEGI_36694 Sequoiadendron giganteum
SGA_v2.0_scaffold166G38335 Striga asiatica
SGA_v2.0_scaffold253G45162 Striga asiatica
SGA_v2.0_scaffold2G01295 Striga asiatica
SGA_v2.0_scaffold51G18754 Striga asiatica
SHI09141 Sapria himalayana
SHI11688 Sapria himalayana
SMO119G0070 Selaginella moellendorffii
SMO119G0331 Selaginella moellendorffii
Solyc02g094420.3 Solanum lycopersicum
Solyc04g051860.3 Solanum lycopersicum
Sopen02g039070 Solanum pennellii
Sopen04g023190 Solanum pennellii
Sp2g16020 Schrenkiella parvula
Sp4g01020 Schrenkiella parvula
Sp7g36340 Schrenkiella parvula
TAR371G0803 Trochodendron aralioides
TAR381G1363 Trochodendron aralioides
THA.LOC104807723 Tarenaya hassleriana
THA.LOC104824858 Tarenaya hassleriana
THA.LOC104825646 Tarenaya hassleriana
Thecc.01G113000 Theobroma cacao
Thecc.04G043000 Theobroma cacao
Thhalv10000262m.g Eutrema salsugineum
Thhalv10004751m.g Eutrema salsugineum
TPR.G2181 Trifolium pratense
TPR.G36708 Trifolium pratense
TWI32G0553 Tripterygium wilfordii
TWI53G1219 Tripterygium wilfordii
TWI74G1314 Tripterygium wilfordii
unitig_37.g12043 Utricularia gibba
unitig_899.g14607 Utricularia gibba
unitig_899.g14608 Utricularia gibba
vmacro02939 Vaccinium macrocarpon
vmacro05985 Vaccinium macrocarpon
vmacro23034 Vaccinium macrocarpon
VMungo0251G3029 Vigna mungo
VMungo0464G1568 Vigna mungo
VMungo1309G0601 Vigna mungo
VMungo1309G0649 Vigna mungo
Zm00001eb028930 Zea mays
Zm00001eb069000 Zea mays
Zm00001eb194410 Zea mays
Zm00001eb254940 Zea mays

User provided reference genes

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