Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p02120 Brassica napus
A08p28300 Brassica napus
A09p41580 Brassica napus
A10p09650 Brassica napus
Aa31LG3G8260 Aethionema arabicum
Aa31LG7G7200 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3944 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis
Actinidia13540 Actinidia chinensis
Actinidia25054 Actinidia chinensis
Actinidia36642 Actinidia chinensis
Actinidia36643 Actinidia chinensis
Ah.07g208780 Amaranthus hybridus
Ah.08g209570 Amaranthus hybridus
Ah.15g090100 Amaranthus hybridus
AL1G36860 Arabidopsis lyrata
AL2G30170 Arabidopsis lyrata
AL8G26110 Arabidopsis lyrata
Aqoxy3G04085 Aquilegia oxysepala
Aqoxy7G00507 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0L48FU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.11RP3X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.23AQDA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7Q0HRU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8EBA9D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DGF9N8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FF7RMB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JZ324E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L7W9LN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M7K8XF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N9NNRP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TT25M1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.URN845 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VE7NYG Arachis hypogaea
AT1G23190 Arabidopsis thaliana
AT1G70730 Arabidopsis thaliana
AT5G51820 Arabidopsis thaliana
ATR0564G031 Amborella trichopoda
ATR0661G181 Amborella trichopoda
Atru.chr11.627 Acer truncatum
Atru.chr13.1859 Acer truncatum
AUR62014170 Chenopodium quinoa
AUR62016062 Chenopodium quinoa
AUR62021270 Chenopodium quinoa
AUR62039535 Chenopodium quinoa
BcaB03g11928 Brassica carinata
BcaB03g14162 Brassica carinata
BcaB05g24526 Brassica carinata
BcaB07g32308 Brassica carinata
BcaB08g35534 Brassica carinata
BcaC04g20630 Brassica carinata
BcaC05g26226 Brassica carinata
BcaC07g39189 Brassica carinata
BolC3t17630H Brassica oleracea
BolC5t30938H Brassica oleracea
BolC8t49818H Brassica oleracea
BolC9t57005H Brassica oleracea
BraA01t02524Z Brassica rapa
BraA08t34761Z Brassica rapa
BraA09t39649Z Brassica rapa
BraA10t43046Z Brassica rapa
C03p53700 Brassica napus
C05p22390 Brassica napus
C08p21790 Brassica napus
C09p41310 Brassica napus
CAN.G1182.5 Capsicum annuum
CAN.G129.47 Capsicum annuum
CAN.G508.26 Capsicum annuum
CAN.G59.3 Capsicum annuum
CANSAT01G2432 Cannabis sativa
CARHR023640 Cardamine hirsuta
CARHR264700 Cardamine hirsuta
Carub.0001s2276 Capsella rubella
Carub.0002s1747 Capsella rubella
Carub.0008s1184 Capsella rubella
Ca_10817_v3 Cicer arietinum L.
Ca_17295_v3 Cicer arietinum L.
Ca_28972_v3 Cicer arietinum L.
CBR_g20360 Chara braunii
CBR_g50380 Chara braunii
Cc02_g03610 Coffea canephora
Cc11_g07350 Coffea canephora
Cc11_g08200 Coffea canephora
CDE04G0092 Ceratophyllum demersum
CDE06G1160 Ceratophyllum demersum
CDE06G2106 Ceratophyllum demersum
Cfa008255 Carpinus fangiana
Cfa014987 Carpinus fangiana
Cfa021417 Carpinus fangiana
Ciclev10004539m.g Citrus clementina
Ciclev10014721m.g Citrus clementina
CiPaw.03G099800 Carya illinoinensis
CiPaw.05G193300 Carya illinoinensis
CiPaw.06G049100 Carya illinoinensis
ClCG01G005310 Citrullus lanatus
ClCG01G006380 Citrullus lanatus
COL.COLO4_13094 Corchorus olitorius
COL.COLO4_14224 Corchorus olitorius
COL.COLO4_14225 Corchorus olitorius
Cpa.g.sc2.232 Carica papaya
Cpa.g.sc4.193 Carica papaya
Cre06.g278210 Chlamydomonas reinhardtii
CsaV3_5G005570 Cucumis sativus L.
CsaV3_5G028300 Cucumis sativus L.
CSS0010922 Camellia sinensis var. sinensis
CSS0014335 Camellia sinensis var. sinensis
CSS0040662 Camellia sinensis var. sinensis
DCAR_023589 Daucus carota
DCAR_026791 Daucus carota
DCAR_028186 Daucus carota
DCAR_028187 Daucus carota
Dinv18621 Davidia involucrata
Dinv18622 Davidia involucrata
Dinv26237 Davidia involucrata
Dinv26238 Davidia involucrata
Dinv28052 Davidia involucrata
Dinv35135 Davidia involucrata
Duzib084G0436 Durio zibethinus
Duzib205G1422 Durio zibethinus
Duzib248G1368 Durio zibethinus
Duzib251G0112 Durio zibethinus
ECA232G3070 Erigeron canadensis
ECA234G3448 Erigeron canadensis
EL10Ac3g05745 Beta vulgaris
EL10Ac6g14164 Beta vulgaris
Eucgr.B02942 Eucalyptus grandis
Eucgr.G02157 Eucalyptus grandis
Eucgr.K00185 Eucalyptus grandis
FAN03G0561 Fragaria x ananassa
FAN03G2937 Fragaria x ananassa
FAN06G1582 Fragaria x ananassa
FAN06G4852 Fragaria x ananassa
FAN07G1563 Fragaria x ananassa
FAN10G1867 Fragaria x ananassa
FAN12G3228 Fragaria x ananassa
FAN16G3194 Fragaria x ananassa
FAN17G0813 Fragaria x ananassa
FAN22G1530 Fragaria x ananassa
FvH4_4g33980 Fragaria vesca
FvH4_7g28680 Fragaria vesca
FvH4_7g28700 Fragaria vesca
Glyma.04G149750 Glycine max
Glyma.05G237000 Glycine max
Glyma.08G044100 Glycine max
Glyma.10G241000 Glycine max
Glyma.20G153600 Glycine max
Gohir.A01G145500 Gossypium hirsutum
Gohir.A04G142200 Gossypium hirsutum
Gohir.A12G262400 Gossypium hirsutum
Gohir.D01G142900 Gossypium hirsutum
Gohir.D04G187001 Gossypium hirsutum
Gohir.D12G263100 Gossypium hirsutum
Gorai.002G176200 Gossypium raimondii
Gorai.008G282000 Gossypium raimondii
Gorai.012G181800 Gossypium raimondii
GSVIVG01011700001 Vitis vinifera
GSVIVG01018452001 Vitis vinifera
HanXRQChr14g0431761 Helianthus annuus
HanXRQChr14g0439791 Helianthus annuus
HanXRQChr16g0529891 Helianthus annuus
HanXRQChr17g0544631 Helianthus annuus
HanXRQChr17g0566841 Helianthus annuus
Haze_10931 Corylus avellana
Haze_10933 Corylus avellana
Haze_10935 Corylus avellana
Haze_13794 Corylus avellana
Haze_27032 Corylus avellana
Haze_27702 Corylus avellana
Hma1.2p1_0346F.1_g131600 Hydrangea macrophylla
Hma1.2p1_0488F.1_g163920 Hydrangea macrophylla
Hma1.2p1_1941F.1_g308410 Hydrangea macrophylla
HPP92_020325 Vanilla planifolia
HPP92_020327 Vanilla planifolia
Hund04681 Selenicereus undatus
Hund24941 Selenicereus undatus
Hund24957 Selenicereus undatus
Hund30620 Selenicereus undatus
Lalb_Chr02g0140861 Lupinus albus
Lalb_Chr05g0222351 Lupinus albus
Lalb_Chr09g0331031 Lupinus albus
Lalb_Chr09g0331041 Lupinus albus
Lj3A866T68 Lonicera japonica
Lj4g0012283 Lotus japonicus
Lj4g0016470 Lotus japonicus
Lj5g0007692 Lotus japonicus
Lj6C741T12 Lonicera japonica
Lj8C32T3 Lonicera japonica
LjContig00141g0005182 Lotus japonicus
Lsat_1_v5_gn_4_13360 Lactuca sativa
Lsat_1_v5_gn_7_52361 Lactuca sativa
Lsat_1_v5_gn_9_52960 Lactuca sativa
Manes.06G141300 Manihot esculenta
Manes.14G031100 Manihot esculenta
Manes.15G131800 Manihot esculenta
Manes.17G081000 Manihot esculenta
Mapoly0048s0016 Marchantia polymorpha
Mapoly0202s0014 Marchantia polymorpha
MCO01G760 Micromonas commoda
MD00G1003800 Malus domestica
MD01G1192300 Malus domestica
MD12G1100300 Malus domestica
MD13G1021000 Malus domestica
MD16G1022300 Malus domestica
Medtr1g102010 Medicago truncatula
Medtr1g102035 Medicago truncatula
Medtr4g120800 Medicago truncatula
Medtr8g104540 Medicago truncatula
MELO3C005293.2 Cucumis melo
MELO3C005396.2 Cucumis melo
MELO3C033987.2 Cucumis melo
Migut.E00456 Erythranthe guttata
Migut.F01162 Erythranthe guttata
MSTRG.116 Avicennia marina
MSTRG.13610 Avicennia marina
MSTRG.2147 Avicennia marina
MSTRG.8427 Avicennia marina
Nitab4.5_0000049g0090 Nicotiana tabacum
Nitab4.5_0000089g0060 Nicotiana tabacum
Nitab4.5_0000089g0070 Nicotiana tabacum
Nitab4.5_0000089g0080 Nicotiana tabacum
Nitab4.5_0000124g0060 Nicotiana tabacum
Nitab4.5_0000325g0010 Nicotiana tabacum
Nitab4.5_0000599g0060 Nicotiana tabacum
Nitab4.5_0000918g0010 Nicotiana tabacum
Nitab4.5_0001573g0050 Nicotiana tabacum
Nn1g01272 Nelumbo nucifera
Nn3g18302 Nelumbo nucifera
Nn4g24269 Nelumbo nucifera
Nn5g27076 Nelumbo nucifera
Nn6g34328 Nelumbo nucifera
Oeu007178.1 Olea europaea
Oeu027024.1 Olea europaea
Oeu030143.4 Olea europaea
Os03g0712700 Oryza sativa ssp. japonica
Os10g0189100 Oryza sativa ssp. japonica
Peaxi162Scf00192g00524 Petunia axillaris
Peaxi162Scf00376g00214 Petunia axillaris
PGR142G4379 Punica granatum
Phvul.002G318400 Phaseolus vulgaris
Phvul.007G064900 Phaseolus vulgaris
Potri.008G132500 Populus trichocarpa
Potri.010G109500 Populus trichocarpa
Potri.012G132500 Populus trichocarpa
Potri.015G134700 Populus trichocarpa
Pp3c15_3340 Physcomitrium patens
Pp3c16_20760 Physcomitrium patens
Pp3c25_10350 Physcomitrium patens
Pp3c9_5060 Physcomitrium patens
PRCOL_00001548 Prasinoderma coloniale
PRCOL_00006957 Prasinoderma coloniale
Prupe.1G330700 Prunus persica
Prupe.2G286900 Prunus persica
Psat6g201960 Pisum sativum
Psat7g010400 Pisum sativum
PSO017G1848 Papaver somniferum
PSO210G6522 Papaver somniferum
PSO478G2350 Papaver somniferum
PSO478G5233 Papaver somniferum
PSO782G2538 Papaver somniferum
QL03p034037 Quercus lobata
QL09p015187 Quercus lobata
QL11p006190 Quercus lobata
RcHm_v2.0_Chr1g0376171 Rosa chinensis
RcHm_v2.0_Chr4g0443511 Rosa chinensis
Rhsim03G0174400 Rhododendron simsii
Rhsim04G0191600 Rhododendron simsii
Rhsim09G0093200 Rhododendron simsii
Rhsim09G0093300 Rhododendron simsii
Sabra08G0101100 Salix brachista
Sabra10G0080000 Salix brachista
Sabra12G0099800 Salix brachista
Sabra15G0146800 Salix brachista
SalBow2G1815 Salvia bowleyana
SalBow2G1863 Salvia bowleyana
Sc14g0007000 Simmondsia chinensis
Sc25g0000300 Simmondsia chinensis
Sed0000426 Sechium edule
Sed0016089 Sechium edule
Sed0019619 Sechium edule
Sed0022212 Sechium edule
SEGI_07304 Sequoiadendron giganteum
SEGI_25175 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05431 Striga asiatica
SGA_v2.0_scaffold139G35382 Striga asiatica
SGA_v2.0_scaffold151G36743 Striga asiatica
SHI04490 Sapria himalayana
SHI21598 Sapria himalayana
SMO348G0100 Selaginella moellendorffii
SMO356G0067 Selaginella moellendorffii
Solyc03g006870.3 Solanum lycopersicum
Solyc04g045340.3 Solanum lycopersicum
Sopen03g002870 Solanum pennellii
Sopen04g016840 Solanum pennellii
Sp1g20650 Schrenkiella parvula
Sp5g25910 Schrenkiella parvula
Sp6g14070 Schrenkiella parvula
TAR376G0894 Trochodendron aralioides
TAR628G0329 Trochodendron aralioides
TAR629G0633 Trochodendron aralioides
THA.LOC104811497 Tarenaya hassleriana
THA.LOC104822997 Tarenaya hassleriana
Thecc.02G288300 Theobroma cacao
Thecc.03G027000 Theobroma cacao
Thecc.03G166400 Theobroma cacao
Thhalv10007178m.g Eutrema salsugineum
Thhalv10012968m.g Eutrema salsugineum
Thhalv10018328m.g Eutrema salsugineum
TPR.G17409 Trifolium pratense
TPR.G32691 Trifolium pratense
TWI23G1029 Tripterygium wilfordii
TWI39G1060 Tripterygium wilfordii
TWI53G1278 Tripterygium wilfordii
TWI77G0774 Tripterygium wilfordii
unitig_26.g10185 Utricularia gibba
unitig_26.g10186 Utricularia gibba
unitig_52.g17280 Utricularia gibba
vmacro00398 Vaccinium macrocarpon
vmacro06735 Vaccinium macrocarpon
vmacro10673 Vaccinium macrocarpon
VMungo0251G2919 Vigna mungo
VMungo0720G0097 Vigna mungo
Zm00001eb054980 Zea mays
Zm00001eb159720 Zea mays
Zm00001eb216260 Zea mays
Zm00001eb274530 Zea mays
Zm00001eb274560 Zea mays
Zm00001eb328120 Zea mays
Zm00001eb442280 Zea mays

User provided reference genes

Program Settings