Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18380 Brassica napus
A02p43220 Brassica napus
A03p52800 Brassica napus
A04p14940 Brassica napus
A05p16430 Brassica napus
A07p20900 Brassica napus
A09p33550 Brassica napus
Aa31LG4G820 Aethionema arabicum
Aa31LG9G350 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.584 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2720 Anthoceros agrestis
Actinidia01397 Actinidia chinensis
Actinidia04213 Actinidia chinensis
Actinidia04457 Actinidia chinensis
Actinidia40064 Actinidia chinensis
Actinidia40065 Actinidia chinensis
Ah.12g052270 Amaranthus hybridus
Ah.15g099390 Amaranthus hybridus
AL3G24970 Arabidopsis lyrata
AL5G31530 Arabidopsis lyrata
AL7G47490 Arabidopsis lyrata
AL8G12490 Arabidopsis lyrata
Aqoxy1G01864 Aquilegia oxysepala
Aqoxy1G01865 Aquilegia oxysepala
Aqoxy1G02056 Aquilegia oxysepala
Aqoxy3G03882 Aquilegia oxysepala
Aqoxy3G03884 Aquilegia oxysepala
Aqoxy3G03885 Aquilegia oxysepala
Aqoxy3G03886 Aquilegia oxysepala
Aqoxy3G04201 Aquilegia oxysepala
Aqoxy5G04153 Aquilegia oxysepala
Aqoxy7G00721 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.99FJVY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BY6BY7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H82VQF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J8J1D7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NMF6QG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZZ2GRA Arachis hypogaea
AT3G13210 Arabidopsis thaliana
AT3G51110 Arabidopsis thaliana
AT5G41770 Arabidopsis thaliana
AT5G45990 Arabidopsis thaliana
ATR0559G071 Amborella trichopoda
Atru.chr9.1864 Acer truncatum
Atru.chr9.2045 Acer truncatum
AUR62011209 Chenopodium quinoa
AUR62013278 Chenopodium quinoa
AUR62019806 Chenopodium quinoa
BcaB02g06949 Brassica carinata
BcaB02g07880 Brassica carinata
BcaB05g24321 Brassica carinata
BcaB06g27667 Brassica carinata
BcaB07g29730 Brassica carinata
BcaC01g01306 Brassica carinata
BcaC02g08918 Brassica carinata
BcaC03g18251 Brassica carinata
BcaC05g26352 Brassica carinata
BcaC06g30666 Brassica carinata
BcaC06g35907 Brassica carinata
BcaC08g44554 Brassica carinata
BcaC09g50077 Brassica carinata
BcaNung03780 Brassica carinata
BcaNung04596 Brassica carinata
BcaNung04599 Brassica carinata
BolC1t02861H Brassica oleracea
BolC1t02874H Brassica oleracea
BolC1t02875H Brassica oleracea
BolC2t12393H Brassica oleracea
BolC3t18242H Brassica oleracea
BolC4t26497H Brassica oleracea
BolC5t31096H Brassica oleracea
BolC6t37200H Brassica oleracea
BolC7t41421H Brassica oleracea
BolC7t45623H Brassica oleracea
BolC8t48821H Brassica oleracea
BraA01t02270Z Brassica rapa
BraA02t07507Z Brassica rapa
BraA02t09242Z Brassica rapa
BraA04t17136Z Brassica rapa
BraA04t17138Z Brassica rapa
BraA06t26503Z Brassica rapa
BraA07t29777Z Brassica rapa
BraA09t38902Z Brassica rapa
BraA10t43190Z Brassica rapa
C01p29330 Brassica napus
C02p63240 Brassica napus
C03p59790 Brassica napus
C03p90430 Brassica napus
C04p49130 Brassica napus
C05p23760 Brassica napus
C06p20190 Brassica napus
C06p20210 Brassica napus
C07p09810 Brassica napus
C07p51230 Brassica napus
C07p51240 Brassica napus
CAN.G1057.10 Capsicum annuum
CAN.G2065.4 Capsicum annuum
CANSAT64G2235 Cannabis sativa
CARHR087800 Cardamine hirsuta
CARHR160700 Cardamine hirsuta
CARHR160710 Cardamine hirsuta
CARHR212800 Cardamine hirsuta
Carub.0005s1751 Capsella rubella
Carub.0007s3361 Capsella rubella
Carub.0008s0193 Capsella rubella
Ca_05842_v3 Cicer arietinum L.
Ca_09750_v3 Cicer arietinum L.
Ca_24521_v3 Cicer arietinum L.
Ca_30915_v3 Cicer arietinum L.
CBR_g3016 Chara braunii
Cc01_g04110 Coffea canephora
Cc08_g15760 Coffea canephora
Cc09_g04360 Coffea canephora
CDE02G2737 Ceratophyllum demersum
CDE09G1202 Ceratophyllum demersum
Cfa020722 Carpinus fangiana
Cfa022853 Carpinus fangiana
Ciclev10010580m.g Citrus clementina
Ciclev10010797m.g Citrus clementina
Ciclev10019082m.g Citrus clementina
Ciclev10033685m.g Citrus clementina
CiPaw.07G046600 Carya illinoinensis
ClCG09G017570 Citrullus lanatus
COL.COLO4_21720 Corchorus olitorius
COL.COLO4_26266 Corchorus olitorius
COL.COLO4_28617 Corchorus olitorius
Cpa.g.c34989 Carica papaya
Cpa.g.sc122.38 Carica papaya
Cre14.g621000 Chlamydomonas reinhardtii
CsaV3_1G014350 Cucumis sativus L.
CsaV3_4G021980 Cucumis sativus L.
CSS0015615 Camellia sinensis var. sinensis
CSS0019382 Camellia sinensis var. sinensis
DCAR_018244 Daucus carota
DCAR_027721 Daucus carota
Dinv38858 Davidia involucrata
Duzib084G0522 Durio zibethinus
Duzib205G0632 Durio zibethinus
ECA233G0232 Erigeron canadensis
ECA233G4887 Erigeron canadensis
ECA236G2802 Erigeron canadensis
ECA236G4944 Erigeron canadensis
EL10Ac2g04666 Beta vulgaris
EL10Ac5g12882 Beta vulgaris
Eucgr.D01708 Eucalyptus grandis
FAN01G0687 Fragaria x ananassa
FAN01G2157 Fragaria x ananassa
FAN01G2857 Fragaria x ananassa
FAN03G0490 Fragaria x ananassa
FAN03G2641 Fragaria x ananassa
FAN04G1440 Fragaria x ananassa
FAN06G1363 Fragaria x ananassa
FAN06G3016 Fragaria x ananassa
FAN07G1850 Fragaria x ananassa
FAN07G2464 Fragaria x ananassa
FAN08G0988 Fragaria x ananassa
FAN10G1946 Fragaria x ananassa
FAN10G2675 Fragaria x ananassa
FAN11G3033 Fragaria x ananassa
FAN12G0847 Fragaria x ananassa
FAN12G4166 Fragaria x ananassa
FAN13G0362 Fragaria x ananassa
FAN16G0982 Fragaria x ananassa
FAN17G2961 Fragaria x ananassa
FAN18G1794 Fragaria x ananassa
FAN18G3032 Fragaria x ananassa
FAN21G2281 Fragaria x ananassa
FAN21G3517 Fragaria x ananassa
FAN23G0518 Fragaria x ananassa
FAN26G1176 Fragaria x ananassa
FvH4_3g03250 Fragaria vesca
FvH4_3g31400 Fragaria vesca
FvH4_5g04070 Fragaria vesca
FvH4_7g09020 Fragaria vesca
FvH4_7g09040 Fragaria vesca
FvH4_7g32671 Fragaria vesca
FvH4_7g32673 Fragaria vesca
FvH4_7g32690 Fragaria vesca
Glyma.01G224300 Glycine max
Glyma.11G018600 Glycine max
Gohir.A11G023900 Gossypium hirsutum
Gohir.D03G098750 Gossypium hirsutum
Gohir.D11G023600 Gossypium hirsutum
Gorai.003G103600 Gossypium raimondii
Gorai.007G025400 Gossypium raimondii
GSVIVG01019497001 Vitis vinifera
HanXRQChr01g0023871 Helianthus annuus
HanXRQChr01g0023881 Helianthus annuus
HanXRQChr07g0191081 Helianthus annuus
HanXRQChr17g0547431 Helianthus annuus
Haze_08669 Corylus avellana
Haze_19036 Corylus avellana
Haze_26397 Corylus avellana
Hma1.2p1_0080F.1_g041950 Hydrangea macrophylla
Hma1.2p1_0714F.1_g207950 Hydrangea macrophylla
Hma1.2p1_0952F.1_g240900 Hydrangea macrophylla
Hma1.2p1_1363F.1_g278310 Hydrangea macrophylla
Hma1.2p1_1680F.1_g297240 Hydrangea macrophylla
Hma1.2p1_1719F.1_g299200 Hydrangea macrophylla
HPP92_013530 Vanilla planifolia
Hund11406 Selenicereus undatus
Hund14237 Selenicereus undatus
Lalb_Chr09g0320691 Lupinus albus
Lj1g0024033 Lotus japonicus
Lj2g0023321 Lotus japonicus
Lj4A679T24 Lonicera japonica
Lj4C518T3 Lonicera japonica
Lj6A594T94 Lonicera japonica
Lj8A210T85 Lonicera japonica
LjContig00310g0016293 Lotus japonicus
Lsat_1_v5_gn_6_11921 Lactuca sativa
Manes.02G012700 Manihot esculenta
Manes.02G012800 Manihot esculenta
Mapoly0060s0046 Marchantia polymorpha
MBI06_g22401_MAGBIO Magnolia biondii
MCO05G210 Micromonas commoda
MD06G1102000 Malus domestica
MD08G1044800 Malus domestica
MD08G1045400 Malus domestica
MD08G1045500 Malus domestica
MD14G1121300 Malus domestica
Medtr4g011050 Medicago truncatula
Medtr4g118885 Medicago truncatula
Medtr4g119010 Medicago truncatula
Medtr5g009520 Medicago truncatula
Medtr6g090890 Medicago truncatula
Medtr7g067440 Medicago truncatula
MELO3C004833.2 Cucumis melo
Migut.E01234 Erythranthe guttata
Migut.E01254 Erythranthe guttata
Migut.E01316 Erythranthe guttata
MSTRG.13874 Avicennia marina
Nitab4.5_0000223g0160 Nicotiana tabacum
Nitab4.5_0000263g0140 Nicotiana tabacum
Nitab4.5_0002788g0010 Nicotiana tabacum
Nitab4.5_0005112g0040 Nicotiana tabacum
Nn1g01812 Nelumbo nucifera
Oeu017334.1 Olea europaea
Oeu046817.1 Olea europaea
Oeu046818.1 Olea europaea
Os05g0289400 Oryza sativa ssp. japonica
Os06g0523900 Oryza sativa ssp. japonica
Os10g0328700 Oryza sativa ssp. japonica
Peaxi162Scf00074g01217 Petunia axillaris
Peaxi162Scf00117g01315 Petunia axillaris
Peaxi162Scf00767g00011 Petunia axillaris
Peaxi162Scf01012g00015 Petunia axillaris
PGR119G1074 Punica granatum
PGSC0003DMG400005011 Solanum tuberosum
PGSC0003DMG400006218 Solanum tuberosum
PGSC0003DMG400006586 Solanum tuberosum
PGSC0003DMG400009506 Solanum tuberosum
PGSC0003DMG400015895 Solanum tuberosum
PGSC0003DMG400028270 Solanum tuberosum
Phvul.002G162900 Phaseolus vulgaris
Potri.001G094400 Populus trichocarpa
Potri.003G137200 Populus trichocarpa
Pp3c13_10420 Physcomitrium patens
Pp3c3_10720 Physcomitrium patens
Prupe.5G115100 Prunus persica
Prupe.6G139700 Prunus persica
Prupe.6G140700 Prunus persica
Psat2g047000 Pisum sativum
PSO135G0234 Papaver somniferum
PSO170G6049 Papaver somniferum
PSO266G0012 Papaver somniferum
QL02p032662 Quercus lobata
QL02p032664 Quercus lobata
QL03p059527 Quercus lobata
QL04p045959 Quercus lobata
QL07p006180 Quercus lobata
QL07p006182 Quercus lobata
QL08p047146 Quercus lobata
QL09p045976 Quercus lobata
QL93p0100_0640 Quercus lobata
RcHm_v2.0_Chr5g0005001 Rosa chinensis
RcHm_v2.0_Chr5g0058111 Rosa chinensis
RcHm_v2.0_Chr7g0195451 Rosa chinensis
Rhsim02G0241000 Rhododendron simsii
Rhsim04G0186100 Rhododendron simsii
RhsimUnG0246700 Rhododendron simsii
Sabra01G0070400 Salix brachista
Sabra03G0098700 Salix brachista
SalBow8G3958 Salvia bowleyana
Sc08g0006750 Simmondsia chinensis
Sed0006165 Sechium edule
Sed0006761 Sechium edule
Sed0007558 Sechium edule
Sed0010377 Sechium edule
SEGI_17587 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31430 Striga asiatica
SGA_v2.0_scaffold111G31439 Striga asiatica
SGA_v2.0_scaffold144G35849 Striga asiatica
SHI22036 Sapria himalayana
SMO144G0002 Selaginella moellendorffii
Solyc03g007560.2 Solanum lycopersicum
Solyc03g007850.1 Solanum lycopersicum
Solyc10g050500.2 Solanum lycopersicum
Solyc12g056080.2 Solanum lycopersicum
Sopen01g025820 Solanum pennellii
Sopen03g003520 Solanum pennellii
Sopen03g003780 Solanum pennellii
Sopen03g003790 Solanum pennellii
Sopen10g033170 Solanum pennellii
Sopen12g028590 Solanum pennellii
Sp2g12900 Schrenkiella parvula
Sp5g11100 Schrenkiella parvula
Sp6g03340 Schrenkiella parvula
Sp7g00320 Schrenkiella parvula
Sp7g19710 Schrenkiella parvula
TAR375G0851 Trochodendron aralioides
THA.LOC104809343 Tarenaya hassleriana
Thecc.03G293000 Theobroma cacao
Thecc.10G176200 Theobroma cacao
Thhalv10024572m.g Eutrema salsugineum
Thhalv10027428m.g Eutrema salsugineum
Thhalv10027664m.g Eutrema salsugineum
TPR.G1266 Trifolium pratense
TPR.G1282 Trifolium pratense
TPR.G18464 Trifolium pratense
TPR.G19449 Trifolium pratense
TPR.G19475 Trifolium pratense
TPR.G22647 Trifolium pratense
TPR.G27021 Trifolium pratense
TPR.G38729 Trifolium pratense
TPR.G38797 Trifolium pratense
TPR.G6076 Trifolium pratense
TPR.G6708 Trifolium pratense
TWI15G0909 Tripterygium wilfordii
TWI60G1540 Tripterygium wilfordii
unitig_32.g11580 Utricularia gibba
vmacro11445 Vaccinium macrocarpon
VMungo1215G1555 Vigna mungo
Zm00001eb051990 Zea mays
Zm00001eb217360 Zea mays

User provided reference genes

Program Settings