Gene: AT3G51110

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G51110
  • Transcript Identifier AT3G51110.1
  • Gene Type Coding gene
  • Location Chr3 : 18983711-18984952 : positive

Gene Family Information

  • ID HOM05D001971
  • #Genes/#Species 335/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G51110.1
  • uniprot F4J390

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 4310 Blast hits to 1959 proteins in 231 species: Archae - 3; Bacteria - 10; Metazoa - 1644; Fungi - 1320; Plants - 755; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000245
IBA
Gene Ontologyspliceosomal complex assembly1
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0071007
IBA
Gene OntologyU2-type catalytic step 2 spliceosome1
GO:0000974
IBA
Gene OntologyPrp19 complex1
GO:0071014
IBA
Gene Ontologypost-mRNA release spliceosomal complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR003107 HAT (Half-A-TPR) repeat
IPR045075 Pre-mRNA-splicing factor Syf1-like
Mapman id Description
16.2.5.2.6 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component CRN/MAC10