Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p25020 Brassica napus
A06p18720 Brassica napus
A06p28010 Brassica napus
A09p06750 Brassica napus
Aa31LG11G3200 Aethionema arabicum
Aa31LG4G17510 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1163 Anthoceros agrestis
Actinidia28269 Actinidia chinensis
Ah.07g201380 Amaranthus hybridus
Ah.12g056040 Amaranthus hybridus
AL5G27460 Arabidopsis lyrata
AL5G28530 Arabidopsis lyrata
AL6G35210 Arabidopsis lyrata
Aqoxy1G03385 Aquilegia oxysepala
Aqoxy3G02197 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0B2JR4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.17TMG9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6VL3HH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K0G9DF Arachis hypogaea
AT3G48960 Arabidopsis thaliana
AT3G49010 Arabidopsis thaliana
AT5G23900 Arabidopsis thaliana
ATR0605G092 Amborella trichopoda
ATR0618G096 Amborella trichopoda
Atru.chr2.3621_Atru.chr2.3623 Acer truncatum
Atru.chr3.3039 Acer truncatum
Atru.chr5.3493 Acer truncatum
AUR62005927 Chenopodium quinoa
AUR62007415 Chenopodium quinoa
AUR62018886 Chenopodium quinoa
AUR62027317 Chenopodium quinoa
BcaB01g00760 Brassica carinata
BcaB02g09573 Brassica carinata
BcaB05g22966 Brassica carinata
BcaC01g02383 Brassica carinata
BcaC07g39378 Brassica carinata
BcaC09g49920 Brassica carinata
BcaNung05472 Brassica carinata
BolC1t03064H Brassica oleracea
BolC3t18844H Brassica oleracea
BolC8t50023H Brassica oleracea
BolC9t53664H Brassica oleracea
BraA01t02413Z Brassica rapa
BraA06t24955Z Brassica rapa
BraA06t25742Z Brassica rapa
BraA09t36320Z Brassica rapa
C01p31250 Brassica napus
C03p65860 Brassica napus
C08p24010 Brassica napus
C09p07490 Brassica napus
CAN.G666.3 Capsicum annuum
CAN.G800.13 Capsicum annuum
CAN.G800.14 Capsicum annuum
CAN.G947.36 Capsicum annuum
CANSAT80G0304 Cannabis sativa
CANSAT80G2165 Cannabis sativa
CANSAT80G2303 Cannabis sativa
CARHR126260 Cardamine hirsuta
CARHR157760 Cardamine hirsuta
CARHR157830 Cardamine hirsuta
CARHR189660 Cardamine hirsuta
CARHR259620 Cardamine hirsuta
CARHR284660 Cardamine hirsuta
Carub.0005s1518 Capsella rubella
Carub.0006s2162 Capsella rubella
Ca_13355_v3 Cicer arietinum L.
Ca_22477_v3 Cicer arietinum L.
Ca_25096_v3 Cicer arietinum L.
Ca_30396_v3 Cicer arietinum L.
CBR_g52408 Chara braunii
Cc00_g07470 Coffea canephora
Cc02_g00470 Coffea canephora
Cc03_g15710 Coffea canephora
Cc05_g00690 Coffea canephora
Cc07_g09530 Coffea canephora
CDE04G3111 Ceratophyllum demersum
CDE12G0757 Ceratophyllum demersum
Cfa012613 Carpinus fangiana
Cfa013616 Carpinus fangiana
Ciclev10009507m.g Citrus clementina
Ciclev10022283m.g Citrus clementina
CiPaw.07G181900 Carya illinoinensis
CiPaw.08G043500 Carya illinoinensis
ClCG01G004870 Citrullus lanatus
ClCG07G017240 Citrullus lanatus
COL.COLO4_10856 Corchorus olitorius
COL.COLO4_19991 Corchorus olitorius
Cpa.g.sc113.54 Carica papaya
Cpa.g.sc32.49 Carica papaya
Cpa.g.sc32.51 Carica papaya
Cre14.g630100 Chlamydomonas reinhardtii
CsaV3_4G004440 Cucumis sativus L.
CsaV3_5G005100 Cucumis sativus L.
CSS0001372 Camellia sinensis var. sinensis
CSS0020013 Camellia sinensis var. sinensis
CSS0031860 Camellia sinensis var. sinensis
DCAR_008999 Daucus carota
DCAR_015289 Daucus carota
DCAR_020398 Daucus carota
Dinv07669 Davidia involucrata
Dinv17271 Davidia involucrata
Dinv29180 Davidia involucrata
Dinv41818 Davidia involucrata
Duzib133G0269 Durio zibethinus
Duzib138G0555 Durio zibethinus
Duzib211G0094 Durio zibethinus
ECA233G4983 Erigeron canadensis
ECA240G0356 Erigeron canadensis
ECA240G1680 Erigeron canadensis
ECA240G2078 Erigeron canadensis
ECA240G4192 Erigeron canadensis
EL10Ac3g05111 Beta vulgaris
EL10Ac5g11914 Beta vulgaris
Eucgr.D02588 Eucalyptus grandis
Eucgr.E01220 Eucalyptus grandis
Eucgr.E01228 Eucalyptus grandis
Eucgr.E01232 Eucalyptus grandis
FAN01G0490 Fragaria x ananassa
FAN03G2575 Fragaria x ananassa
FAN10G1770 Fragaria x ananassa
FAN10G4328 Fragaria x ananassa
FAN18G0099 Fragaria x ananassa
FAN19G2968 Fragaria x ananassa
FAN26G1205 Fragaria x ananassa
FAN28G1970 Fragaria x ananassa
FAN28G2790 Fragaria x ananassa
FvH4_1g22670 Fragaria vesca
FvH4_7g33460 Fragaria vesca
FvH4_7g33500 Fragaria vesca
Glyma.04G122700 Glycine max
Glyma.09G214400 Glycine max
Glyma.16G074600 Glycine max
Glyma.16G106300 Glycine max
Gohir.A07G084400 Gossypium hirsutum
Gohir.A07G165100 Gossypium hirsutum
Gohir.A08G051000 Gossypium hirsutum
Gohir.A11G155200 Gossypium hirsutum
Gohir.D07G087700 Gossypium hirsutum
Gohir.D07G177000 Gossypium hirsutum
Gohir.D08G060700 Gossypium hirsutum
Gohir.D11G162100 Gossypium hirsutum
Gorai.001G093800 Gossypium raimondii
Gorai.001G197800 Gossypium raimondii
Gorai.004G062900 Gossypium raimondii
Gorai.007G172400 Gossypium raimondii
GSVIVG01027212001 Vitis vinifera
GSVIVG01030767001 Vitis vinifera
HanXRQChr03g0081301 Helianthus annuus
HanXRQChr08g0226761 Helianthus annuus
HanXRQChr12g0382261 Helianthus annuus
HanXRQChr13g0411061 Helianthus annuus
Haze_08043 Corylus avellana
Haze_08053 Corylus avellana
Haze_22243 Corylus avellana
Haze_26351 Corylus avellana
Hma1.2p1_0115F.1_g055920 Hydrangea macrophylla
Hma1.2p1_2872F.1_g329695 Hydrangea macrophylla
Hma1.2p1_2872F.1_g329705 Hydrangea macrophylla
HPP92_022759 Vanilla planifolia
Hund09763 Selenicereus undatus
Hund11099 Selenicereus undatus
Hund11130 Selenicereus undatus
Hund14330 Selenicereus undatus
Hund21084 Selenicereus undatus
Lalb_Chr04g0254891 Lupinus albus
Lalb_Chr05g0215401 Lupinus albus
Lalb_Chr09g0325231 Lupinus albus
Lalb_Chr10g0099771 Lupinus albus
Lalb_Chr16g0380711 Lupinus albus
Lj1A1032T33 Lonicera japonica
Lj2A717T23 Lonicera japonica
Lj2g0002482 Lotus japonicus
Lj4A824T17 Lonicera japonica
Lj4g0015194 Lotus japonicus
LjContig00081g0007868 Lotus japonicus
Lsat_1_v5_gn_0_46260 Lactuca sativa
Lsat_1_v5_gn_6_15240 Lactuca sativa
Lsat_1_v5_gn_6_15340 Lactuca sativa
Lsat_1_v5_gn_9_78721 Lactuca sativa
Lsat_1_v5_gn_9_79140 Lactuca sativa
Manes.07G017100 Manihot esculenta
Manes.08G165300 Manihot esculenta
Manes.09G123800 Manihot esculenta
Manes.10G126300 Manihot esculenta
Mapoly0005s0116 Marchantia polymorpha
Mapoly0055s0071 Marchantia polymorpha
MBI03_g05114_MAGBIO Magnolia biondii
MBI04_g27276_MAGBIO Magnolia biondii
MCO05G321 Micromonas commoda
MD00G1180000 Malus domestica
MD01G1232600 Malus domestica
MD03G1289100 Malus domestica
MD07G1304700 Malus domestica
MD09G1037700 Malus domestica
MD11G1308800 Malus domestica
Medtr1g022165 Medicago truncatula
Medtr5g026750 Medicago truncatula
Medtr7g111590 Medicago truncatula
Medtr8g071810 Medicago truncatula
MELO3C005446.2 Cucumis melo
MELO3C017622.2 Cucumis melo
MELO3C018398.2 Cucumis melo
Migut.F00110 Erythranthe guttata
Migut.F00956 Erythranthe guttata
MSTRG.15 Avicennia marina
MSTRG.26942 Avicennia marina
Nitab4.5_0000009g0160 Nicotiana tabacum
Nitab4.5_0000030g0200 Nicotiana tabacum
Nitab4.5_0000115g0250 Nicotiana tabacum
Nitab4.5_0000491g0100 Nicotiana tabacum
Nitab4.5_0000943g0170 Nicotiana tabacum
Nitab4.5_0001222g0040 Nicotiana tabacum
Nitab4.5_0003012g0110 Nicotiana tabacum
Nitab4.5_0004586g0010 Nicotiana tabacum
Nitab4.5_0004586g0020 Nicotiana tabacum
Nitab4.5_0004971g0030 Nicotiana tabacum
Nitab4.5_0006915g0010 Nicotiana tabacum
Nitab4.5_0007055g0010 Nicotiana tabacum
Nitab4.5_0007072g0020 Nicotiana tabacum
Nitab4.5_0010439g0020 Nicotiana tabacum
Nn1g08205 Nelumbo nucifera
Nn2g14859 Nelumbo nucifera
Nn2g14863 Nelumbo nucifera
Nn3g19254 Nelumbo nucifera
Oeu023355.1 Olea europaea
Oeu055437.1 Olea europaea
Oeu055440.1 Olea europaea
Oeu061058.1 Olea europaea
Oeu063744.1 Olea europaea
Os03g0576700 Oryza sativa ssp. japonica
Os06g0115500 Oryza sativa ssp. japonica
Os08g0162900 Oryza sativa ssp. japonica
Peaxi162Scf00130g01324 Petunia axillaris
Peaxi162Scf00193g00114 Petunia axillaris
Peaxi162Scf00193g00119 Petunia axillaris
Peaxi162Scf00815g00234 Petunia axillaris
Peaxi162Scf00876g00436 Petunia axillaris
Peaxi162Scf01081g00015 Petunia axillaris
PGR042G0704 Punica granatum
PGR042G1818 Punica granatum
PGR142G0560 Punica granatum
PGSC0003DMG400026852 Solanum tuberosum
PGSC0003DMG400029381 Solanum tuberosum
PGSC0003DMG400030868 Solanum tuberosum
Phvul.002G127900 Phaseolus vulgaris
Phvul.003G276400 Phaseolus vulgaris
Phvul.003G276500 Phaseolus vulgaris
Potri.001G131000 Populus trichocarpa
Potri.003G102800 Populus trichocarpa
Potri.013G027600 Populus trichocarpa
Potri.016G082300 Populus trichocarpa
Pp3c10_7370 Physcomitrium patens
Pp3c12_20030 Physcomitrium patens
Pp3c13_15900 Physcomitrium patens
Pp3c14_3490 Physcomitrium patens
Pp3c1_26280 Physcomitrium patens
Pp3c3_21130 Physcomitrium patens
PRCOL_00001827 Prasinoderma coloniale
Prupe.2G323200 Prunus persica
Prupe.5G019600 Prunus persica
Psat0s1759g0080 Pisum sativum
Psat2g045120 Pisum sativum
Psat2g143720 Pisum sativum
Psat6g006640 Pisum sativum
PSO063G2744 Papaver somniferum
PSO063G4676 Papaver somniferum
PSO782G2723 Papaver somniferum
PSO782G4458 Papaver somniferum
QL05p052792 Quercus lobata
QL09p026603 Quercus lobata
RcHm_v2.0_Chr1g0380821 Rosa chinensis
RcHm_v2.0_Chr1g0380831 Rosa chinensis
RcHm_v2.0_Chr1g0383541 Rosa chinensis
RcHm_v2.0_Chr2g0116901 Rosa chinensis
Rhsim01G0125200 Rhododendron simsii
Rhsim03G0219500 Rhododendron simsii
Rhsim09G0211700 Rhododendron simsii
Sabra01G0101300 Salix brachista
Sabra03G0070000 Salix brachista
Sabra13G0028200 Salix brachista
Sabra16G0090000 Salix brachista
SalBow3G4409 Salvia bowleyana
Sc07g0001130 Simmondsia chinensis
Sc13g0010710 Simmondsia chinensis
Sc19g0000300 Simmondsia chinensis
Sed0002950 Sechium edule
Sed0003086 Sechium edule
Sed0010308 Sechium edule
Sed0014110 Sechium edule
SEGI_22316 Sequoiadendron giganteum
SEGI_24158 Sequoiadendron giganteum
SEGI_31270 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08500 Striga asiatica
SGA_v2.0_scaffold44G16878 Striga asiatica
SMO361G0486 Selaginella moellendorffii
SMO361G0746 Selaginella moellendorffii
Solyc06g072900.4 Solanum lycopersicum
Solyc08g075700.3 Solanum lycopersicum
Solyc12g096150.2 Solanum lycopersicum
Sopen08g024350 Solanum pennellii
Sopen12g032030 Solanum pennellii
Sp2g23380 Schrenkiella parvula
Sp5g13040 Schrenkiella parvula
TAR369G0760 Trochodendron aralioides
TAR374G1187 Trochodendron aralioides
TAR375G0319 Trochodendron aralioides
TAR636G1156 Trochodendron aralioides
THA.LOC104798932 Tarenaya hassleriana
THA.LOC104813848 Tarenaya hassleriana
THA.LOC104818167 Tarenaya hassleriana
THA.LOC104821391 Tarenaya hassleriana
THA.LOC104821568 Tarenaya hassleriana
Thecc.01G174900 Theobroma cacao
Thecc.03G321800 Theobroma cacao
Thecc.08G186900 Theobroma cacao
Thhalv10004920m.g Eutrema salsugineum
Thhalv10010724m.g Eutrema salsugineum
TPR.G1115 Trifolium pratense
TPR.G16800 Trifolium pratense
TPR.G17267 Trifolium pratense
TWI32G0345 Tripterygium wilfordii
TWI34G1543 Tripterygium wilfordii
TWI60G1260 Tripterygium wilfordii
TWI79G0891 Tripterygium wilfordii
TWI79G1347 Tripterygium wilfordii
unitig_578.g16666 Utricularia gibba
unitig_736.g22885 Utricularia gibba
unitig_85.g27203 Utricularia gibba
vmacro05232 Vaccinium macrocarpon
vmacro05234 Vaccinium macrocarpon
vmacro06485 Vaccinium macrocarpon
vmacro11855 Vaccinium macrocarpon
VMungo0647G0949 Vigna mungo
VMungo1127G1547 Vigna mungo
VMungo1215G2325 Vigna mungo
Zm00001eb143000 Zea mays
Zm00001eb282960 Zea mays
Zm00001eb364190 Zea mays

User provided reference genes

Program Settings