Gene: AT3G49010

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G49010
  • Transcript Identifier AT3G49010.2
  • Gene Type Coding gene
  • Location Chr3 : 18166971-18168047 : negative

Gene Family Information

  • ID HOM05D001955
  • #Genes/#Species 338/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G49010.2
  • symbol BBC1
  • Alias ATBBC1,breast basic conserved 1,RSU2,40S RIBOSOMAL PROTEIN
  • uniprot P41127

Descriptions

  • Description breast basic conserved 1
  • Computational description breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 738 Blast hits to 738 proteins in 281 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
  • Computational description breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 738 Blast hits to 738 proteins in 281 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
TAS, IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
GOA Databasestructural constituent of ribosome
GO:0003735
ISS, IBA
IEA
Gene Ontologystructural constituent of ribosome1 2
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003729
IDA, HDA
Gene OntologymRNA binding3 4
GO:0003723
IBA
Gene OntologyRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0022625
IDA
GOA Databasecytosolic large ribosomal subunit
GO:0022625
HDA
IBA
Gene Ontologycytosolic large ribosomal subunit2 5
GO:0042788
IDA
GOA Databasepolysomal ribosome
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005618
IDA
GOA Databasecell wall
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus6
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome7
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol8
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma9
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
TAS
Gene Ontologyribosome
GO:0005840
IEA
InterProribosome
GO:0009505
HDA
Gene Ontologyplant-type cell wall10
GO:0000325
HDA
Gene Ontologyplant-type vacuole11
GO:0005794
RCA
Gene OntologyGolgi apparatus12

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001380 Ribosomal protein L13e
Mapman id Description
17.1.2.1.13 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL13