Gene: AT3G48960
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G48960
- Transcript Identifier AT3G48960.1
- Gene Type Coding gene
- Location Chr3 : 18150444-18151412 : negative
Gene Family Information
- ID HOM05D001955
- #Genes/#Species 338/99
- Phylogenetic origin
- ID ORTHO05D001917
- #Genes/#Species 337/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G48960.1
- uniprot Q9SMT4
Descriptions
- Description Ribosomal protein L13e family protein
- Computational description Ribosomal protein L13e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: breast basic conserved 1 (TAIR:AT3G49010.3); Has 735 Blast hits to 735 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | Gene Ontology | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IDA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IBA | Gene Ontology | structural constituent of ribosome | 1 |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003723 | IBA | Gene Ontology | RNA binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0022625 | IDA | GOA Database | cytosolic large ribosomal subunit | |
| GO:0022625 | HDA IBA | Gene Ontology | cytosolic large ribosomal subunit | 1 2 |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001380 | Ribosomal protein L13e |
| Mapman id | Description |
|---|---|
| 17.1.2.1.13 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL13 |