Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p06490 Brassica napus
A05p09250 Brassica napus
A07p21370 Brassica napus
A09p46080 Brassica napus
A09p46100 Brassica napus
Aa31LG10G7870 Aethionema arabicum
Aa31LG10G8230 Aethionema arabicum
Aa31LG2G18320 Aethionema arabicum
Aa31LG5G21820 Aethionema arabicum
Aa31sc438G10 Aethionema arabicum
Aa31sc528G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3281 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5175 Anthoceros agrestis
Actinidia02033 Actinidia chinensis
Actinidia11317 Actinidia chinensis
Actinidia31812 Actinidia chinensis
Actinidia32881 Actinidia chinensis
Actinidia39865 Actinidia chinensis
Ah.13g068500 Amaranthus hybridus
AL4G32800 Arabidopsis lyrata
AL5G33850 Arabidopsis lyrata
Aqoxy2G03338 Aquilegia oxysepala
Aqoxy2G03339 Aquilegia oxysepala
Aqoxy7G00409 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8FR7LA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JBE829 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LDJ5Y6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y2FUU3 Arachis hypogaea
AT2G36620 Arabidopsis thaliana
AT3G53020 Arabidopsis thaliana
ATR0068G053 Amborella trichopoda
ATR0757G205 Amborella trichopoda
Atru.chr10.589 Acer truncatum
Atru.chr6.654 Acer truncatum
Atru.chr6.656 Acer truncatum
AUR62010637 Chenopodium quinoa
AUR62016002 Chenopodium quinoa
AUR62017280 Chenopodium quinoa
AUR62021210 Chenopodium quinoa
AUR62041043 Chenopodium quinoa
BcaB01g00316 Brassica carinata
BcaB01g03822 Brassica carinata
BcaB02g08543 Brassica carinata
BcaB02g09345 Brassica carinata
BcaC01g05645 Brassica carinata
BcaC02g09196 Brassica carinata
BcaC02g11775 Brassica carinata
BcaC07g39666 Brassica carinata
BcaC08g44620 Brassica carinata
BolC3t14765H Brassica oleracea
BolC4t22802H Brassica oleracea
BolC4t25566H Brassica oleracea
BolC6t37280H Brassica oleracea
BolC8t50442H Brassica oleracea
BolC8t50444H Brassica oleracea
BolSC66t61252H Brassica oleracea
BraA04t16352Z Brassica rapa
BraA05t19881Z Brassica rapa
BraA07t29824Z Brassica rapa
BraA09t40072Z Brassica rapa
BraA09t40074Z Brassica rapa
C03p23700 Brassica napus
C04p11520 Brassica napus
C04p39940 Brassica napus
C06p20920 Brassica napus
C08p28340 Brassica napus
CAN.G512.6 Capsicum annuum
CAN.G541.19 Capsicum annuum
CAN.G738.9 Capsicum annuum
CAN.G824.51 Capsicum annuum
CANSAT80G0414 Cannabis sativa
CANSAT80G0745 Cannabis sativa
CANSAT80G1466 Cannabis sativa
CARHR130900 Cardamine hirsuta
CARHR162910 Cardamine hirsuta
Carub.0004s1844 Capsella rubella
Carub.0005s1952 Capsella rubella
Ca_08951_v3 Cicer arietinum L.
Ca_11607_v3 Cicer arietinum L.
Ca_12337_v3 Cicer arietinum L.
CBR_g26170 Chara braunii
CBR_g49765 Chara braunii
Cc00_g08920 Coffea canephora
Cc02_g03280 Coffea canephora
Cc06_g04980 Coffea canephora
Cc08_g14140 Coffea canephora
CDE02G2509 Ceratophyllum demersum
CDE07G0580 Ceratophyllum demersum
CDE11G0001 Ceratophyllum demersum
Cfa006190 Carpinus fangiana
Ciclev10022601m.g Citrus clementina
Ciclev10023969m.g Citrus clementina
CiPaw.10G003400 Carya illinoinensis
CiPaw.11G139900 Carya illinoinensis
CiPaw.12G097300 Carya illinoinensis
CiPaw.13G034900 Carya illinoinensis
ClCG04G009670 Citrullus lanatus
ClCG10G019550 Citrullus lanatus
COL.COLO4_14277 Corchorus olitorius
COL.COLO4_22283 Corchorus olitorius
Cpa.g.sc30.44 Carica papaya
Cpa.g.sc5.107 Carica papaya
Cpa.g.sc841.1 Carica papaya
Cre09.g391097 Chlamydomonas reinhardtii
CsaV3_3G036650 Cucumis sativus L.
CsaV3_6G040310 Cucumis sativus L.
CSS0000130 Camellia sinensis var. sinensis
CSS0039458 Camellia sinensis var. sinensis
DCAR_017637 Daucus carota
DCAR_020232 Daucus carota
DCAR_020788 Daucus carota
Dinv28467 Davidia involucrata
Dinv35191 Davidia involucrata
Dinv35851 Davidia involucrata
Dinv37377 Davidia involucrata
Duzib084G1285 Durio zibethinus
Duzib093G1442 Durio zibethinus
Duzib106G0312 Durio zibethinus
Duzib128G0195 Durio zibethinus
Duzib128G1774 Durio zibethinus
Duzib205G0307 Durio zibethinus
ECA232G1017 Erigeron canadensis
ECA233G0026 Erigeron canadensis
ECA238G1894 Erigeron canadensis
EL10Ac3g05671 Beta vulgaris
FAN01G3096 Fragaria x ananassa
FAN02G1334 Fragaria x ananassa
FAN03G1501 Fragaria x ananassa
FAN03G2853 Fragaria x ananassa
FAN04G1390 Fragaria x ananassa
FAN05G3094 Fragaria x ananassa
FAN05G4674 Fragaria x ananassa
FAN06G2543 Fragaria x ananassa
FAN06G4519 Fragaria x ananassa
FAN08G0781 Fragaria x ananassa
FAN09G0531 Fragaria x ananassa
FAN09G4589 Fragaria x ananassa
FAN10G2695 Fragaria x ananassa
FAN11G1166 Fragaria x ananassa
FAN13G3063 Fragaria x ananassa
FAN14G4889 Fragaria x ananassa
FAN17G1890 Fragaria x ananassa
FAN18G0594 Fragaria x ananassa
FvH4_2g09804 Fragaria vesca
FvH4_5g01720 Fragaria vesca
FvH4_6g17440 Fragaria vesca
FvH4_6g28801 Fragaria vesca
FvH4_7g29120 Fragaria vesca
Glyma.03G189300 Glycine max
Glyma.10G066500 Glycine max
Glyma.13G151600 Glycine max
Glyma.19G189600 Glycine max
Gohir.A01G210920 Gossypium hirsutum
Gohir.A09G142700 Gossypium hirsutum
Gohir.A09G180100 Gossypium hirsutum
Gohir.A11G322500 Gossypium hirsutum
Gohir.D01G199701 Gossypium hirsutum
Gohir.D09G138900 Gossypium hirsutum
Gohir.D11G341600 Gossypium hirsutum
Gorai.002G244300 Gossypium raimondii
Gorai.006G159400 Gossypium raimondii
Gorai.007G371600 Gossypium raimondii
GSVIVG01010601001 Vitis vinifera
GSVIVG01033743001 Vitis vinifera
GSVIVG01034676001 Vitis vinifera
HanXRQChr01g0004831 Helianthus annuus
HanXRQChr09g0253781 Helianthus annuus
HanXRQChr10g0281991 Helianthus annuus
HanXRQChr10g0282021 Helianthus annuus
HanXRQChr13g0393681 Helianthus annuus
HanXRQChr15g0495621 Helianthus annuus
Haze_19509 Corylus avellana
Haze_27009 Corylus avellana
Hma1.2p1_0084F.1_g042980 Hydrangea macrophylla
HPP92_017898 Vanilla planifolia
HPP92_017901 Vanilla planifolia
HPP92_019028 Vanilla planifolia
Hund04729 Selenicereus undatus
Hund11761 Selenicereus undatus
Hund28787 Selenicereus undatus
Lalb_Chr01g0018451 Lupinus albus
Lalb_Chr04g0261331 Lupinus albus
Lalb_Chr04g0261341 Lupinus albus
Lalb_Chr15g0076461 Lupinus albus
Lalb_Chr20g0112301 Lupinus albus
Lalb_Chr25g0288741 Lupinus albus
Lj1A994T59 Lonicera japonica
Lj2A193T57 Lonicera japonica
Lj2C26T1 Lonicera japonica
Lj2g0024206 Lotus japonicus
Lj4g0018292 Lotus japonicus
Lj8A26G45 Lonicera japonica
Lsat_1_v5_gn_2_131641 Lactuca sativa
Lsat_1_v5_gn_8_7001 Lactuca sativa
Lsat_1_v5_gn_9_54240 Lactuca sativa
Manes.01G065600 Manihot esculenta
Manes.02G026400 Manihot esculenta
Manes.02G169200 Manihot esculenta
Manes.06G145400 Manihot esculenta
Mapoly0055s0009 Marchantia polymorpha
Mapoly0084s0003 Marchantia polymorpha
MBI04_g42403_MAGBIO Magnolia biondii
MBI12_g15166_MAGBIO Magnolia biondii
MBI13_g02428_MAGBIO Magnolia biondii
MBI13_g42057_MAGBIO Magnolia biondii
MCO13G546 Micromonas commoda
MD00G1145600 Malus domestica
MD04G1065300 Malus domestica
MD07G1266300 Malus domestica
MD12G1100700 Malus domestica
MD14G1094900 Malus domestica
Medtr1g061670 Medicago truncatula
Medtr4g104930 Medicago truncatula
Medtr7g103320 Medicago truncatula
MELO3C009419.2 Cucumis melo
MELO3C024506.2 Cucumis melo
Migut.I00133 Erythranthe guttata
Migut.O00209 Erythranthe guttata
MSTRG.12009 Avicennia marina
MSTRG.13827 Avicennia marina
MSTRG.25581 Avicennia marina
Nitab4.5_0000132g0300 Nicotiana tabacum
Nitab4.5_0000381g0400 Nicotiana tabacum
Nitab4.5_0000680g0080 Nicotiana tabacum
Nitab4.5_0006314g0020 Nicotiana tabacum
Nitab4.5_0009127g0050 Nicotiana tabacum
Nitab4.5_0009405g0030 Nicotiana tabacum
Nitab4.5_0016013g0010 Nicotiana tabacum
Nn1g01389 Nelumbo nucifera
Nn2g15908 Nelumbo nucifera
Nn6g34218 Nelumbo nucifera
Oeu011672.1 Olea europaea
Oeu028569.1 Olea europaea
Oeu037533.1 Olea europaea
Os05g0486700 Oryza sativa ssp. japonica
Os07g0224000 Oryza sativa ssp. japonica
Peaxi162Scf00110g00117 Petunia axillaris
Peaxi162Scf00146g00514 Petunia axillaris
Peaxi162Scf00638g00013 Petunia axillaris
Peaxi162Scf02095g00010 Petunia axillaris
PGR004G2557 Punica granatum
PGR031G0006 Punica granatum
PGR142G0677 Punica granatum
PGSC0003DMG400002729 Solanum tuberosum
PGSC0003DMG400011041 Solanum tuberosum
PGSC0003DMG400028271 Solanum tuberosum
Phvul.001G184700 Phaseolus vulgaris
Phvul.007G224900 Phaseolus vulgaris
Potri.003G123101 Populus trichocarpa
Potri.004G085300 Populus trichocarpa
Potri.012G139400 Populus trichocarpa
Potri.012G139500 Populus trichocarpa
Potri.015G141900 Populus trichocarpa
Pp3c13_10770 Physcomitrium patens
Pp3c1_16170 Physcomitrium patens
Pp3c1_18930 Physcomitrium patens
Pp3c27_6690 Physcomitrium patens
Pp3c3_10840 Physcomitrium patens
Pp3c3_8930 Physcomitrium patens
Pp3c4_25160 Physcomitrium patens
Pp3c4_25170 Physcomitrium patens
PRCOL_00002004 Prasinoderma coloniale
Prupe.5G092800 Prunus persica
Prupe.7G121200 Prunus persica
Psat0ss1870g0040 Pisum sativum
Psat3g036920 Pisum sativum
Psat7g218680 Pisum sativum
PSO363G0001 Papaver somniferum
PSO478G0162 Papaver somniferum
PSO478G2206 Papaver somniferum
PSO478G2364 Papaver somniferum
PSO541G3256 Papaver somniferum
PSO675G8248 Papaver somniferum
QL04p040470 Quercus lobata
QL07p041002 Quercus lobata
QL07p041053 Quercus lobata
QL12p017536 Quercus lobata
RcHm_v2.0_Chr1g0313771 Rosa chinensis
RcHm_v2.0_Chr1g0376871 Rosa chinensis
RcHm_v2.0_Chr3g0471681 Rosa chinensis
RcHm_v2.0_Chr7g0199011 Rosa chinensis
Rhsim03G0084600 Rhododendron simsii
Rhsim03G0178400 Rhododendron simsii
Rhsim09G0197100 Rhododendron simsii
Sabra03G0086800 Salix brachista
Sabra04G0056400 Salix brachista
Sabra12G0104600 Salix brachista
Sabra15G0152100 Salix brachista
SalBow1G7093 Salvia bowleyana
SalBow1G7591 Salvia bowleyana
Sc06g0002170 Simmondsia chinensis
Sc09g0005640 Simmondsia chinensis
Sc20g0001390 Simmondsia chinensis
Sed0007956 Sechium edule
Sed0014681 Sechium edule
Sed0017178 Sechium edule
Sed0025234 Sechium edule
SEGI_03680 Sequoiadendron giganteum
SGA_v2.0_scaffold144G35968 Striga asiatica
SGA_v2.0_scaffold286G47082 Striga asiatica
SGA_v2.0_scaffold343G49462 Striga asiatica
SMO271G0053 Selaginella moellendorffii
SMO356G0568 Selaginella moellendorffii
Solyc09g008800.3 Solanum lycopersicum
Solyc10g083740.3 Solanum lycopersicum
Solyc10g085480.2 Solanum lycopersicum
Sopen09g003590 Solanum pennellii
Sopen10g034910 Solanum pennellii
Sp4g18900 Schrenkiella parvula
Sp5g09300 Schrenkiella parvula
TAR374G1344 Trochodendron aralioides
TAR623G0411 Trochodendron aralioides
TAR633G0321 Trochodendron aralioides
TAR636G2023 Trochodendron aralioides
THA.LOC104805122 Tarenaya hassleriana
THA.LOC104823474 Tarenaya hassleriana
THA.LOC104826938 Tarenaya hassleriana
THA.LOC104827494 Tarenaya hassleriana
Thecc.03G172400 Theobroma cacao
Thecc.05G078000 Theobroma cacao
Thecc.10G094200 Theobroma cacao
Thecc.10G126900 Theobroma cacao
Thhalv10010779m.g Eutrema salsugineum
Thhalv10017341m.g Eutrema salsugineum
TPR.G26171 Trifolium pratense
TPR.G31506 Trifolium pratense
TPR.G5696 Trifolium pratense
TWI39G1062 Tripterygium wilfordii
TWI53G1091 Tripterygium wilfordii
TWI74G0046 Tripterygium wilfordii
TWI77G0861 Tripterygium wilfordii
unitig_26.g9137 Utricularia gibba
unitig_26.g9149 Utricularia gibba
unitig_749.g14207 Utricularia gibba
vmacro06708 Vaccinium macrocarpon
vmacro07344 Vaccinium macrocarpon
vmacro09849 Vaccinium macrocarpon
VMungo0720G0249 Vigna mungo
VMungo1383G2318 Vigna mungo
Zm00001eb049720 Zea mays
Zm00001eb219320 Zea mays
Zm00001eb352180 Zea mays

User provided reference genes

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