Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '342', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p06490' => 'bna', 'A05p09250' => 'bna', 'A07p21370' => 'bna', 'A09p46080' => 'bna', 'A09p46100' => 'bna', 'Aa31LG10G7870' => 'aar', 'Aa31LG10G8230' => 'aar', 'Aa31LG2G18320' => 'aar', 'Aa31LG5G21820' => 'aar', 'Aa31sc438G10' => 'aar', 'Aa31sc528G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5175' => 'aag', 'Actinidia02033' => 'ach', 'Actinidia11317' => 'ach', 'Actinidia31812' => 'ach', 'Actinidia32881' => 'ach', 'Actinidia39865' => 'ach', 'Ah.13g068500' => 'amhyb', 'AL4G32800' => 'aly', 'AL5G33850' => 'aly', 'Aqoxy2G03338' => 'aox', 'Aqoxy2G03339' => 'aox', 'Aqoxy7G00409' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8FR7LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBE829' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDJ5Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2FUU3' => 'arhy', 'AT2G36620' => 'ath', 'AT3G53020' => 'ath', 'ATR0068G053' => 'atr', 'ATR0757G205' => 'atr', 'Atru.chr10.589' => 'acertr', 'Atru.chr6.654' => 'acertr', 'Atru.chr6.656' => 'acertr', 'AUR62010637' => 'cqu', 'AUR62016002' => 'cqu', 'AUR62017280' => 'cqu', 'AUR62021210' => 'cqu', 'AUR62041043' => 'cqu', 'BcaB01g00316' => 'bca', 'BcaB01g03822' => 'bca', 'BcaB02g08543' => 'bca', 'BcaB02g09345' => 'bca', 'BcaC01g05645' => 'bca', 'BcaC02g09196' => 'bca', 'BcaC02g11775' => 'bca', 'BcaC07g39666' => 'bca', 'BcaC08g44620' => 'bca', 'BolC3t14765H' => 'bol', 'BolC4t22802H' => 'bol', 'BolC4t25566H' => 'bol', 'BolC6t37280H' => 'bol', 'BolC8t50442H' => 'bol', 'BolC8t50444H' => 'bol', 'BolSC66t61252H' => 'bol', 'BraA04t16352Z' => 'bra', 'BraA05t19881Z' => 'bra', 'BraA07t29824Z' => 'bra', 'BraA09t40072Z' => 'bra', 'BraA09t40074Z' => 'bra', 'C03p23700' => 'bna', 'C04p11520' => 'bna', 'C04p39940' => 'bna', 'C06p20920' => 'bna', 'C08p28340' => 'bna', 'CAN.G512.6' => 'can', 'CAN.G541.19' => 'can', 'CAN.G738.9' => 'can', 'CAN.G824.51' => 'can', 'CANSAT80G0414' => 'cansat', 'CANSAT80G0745' => 'cansat', 'CANSAT80G1466' => 'cansat', 'CARHR130900' => 'chi', 'CARHR162910' => 'chi', 'Carub.0004s1844' => 'cru', 'Carub.0005s1952' => 'cru', 'Ca_08951_v3' => 'car', 'Ca_11607_v3' => 'car', 'Ca_12337_v3' => 'car', 'CBR_g26170' => 'cbr', 'CBR_g49765' => 'cbr', 'Cc00_g08920' => 'ccan', 'Cc02_g03280' => 'ccan', 'Cc06_g04980' => 'ccan', 'Cc08_g14140' => 'ccan', 'CDE02G2509' => 'cde', 'CDE07G0580' => 'cde', 'CDE11G0001' => 'cde', 'Cfa006190' => 'cfa', 'Ciclev10022601m.g' => 'ccl', 'Ciclev10023969m.g' => 'ccl', 'CiPaw.10G003400' => 'cil', 'CiPaw.11G139900' => 'cil', 'CiPaw.12G097300' => 'cil', 'CiPaw.13G034900' => 'cil', 'ClCG04G009670' => 'cla', 'ClCG10G019550' => 'cla', 'COL.COLO4_14277' => 'col', 'COL.COLO4_22283' => 'col', 'Cpa.g.sc30.44' => 'cpa', 'Cpa.g.sc5.107' => 'cpa', 'Cpa.g.sc841.1' => 'cpa', 'Cre09.g391097' => 'cre', 'CsaV3_3G036650' => 'csa', 'CsaV3_6G040310' => 'csa', 'CSS0000130' => 'camsi', 'CSS0039458' => 'camsi', 'DCAR_017637' => 'dca', 'DCAR_020232' => 'dca', 'DCAR_020788' => 'dca', 'Dinv28467' => 'din', 'Dinv35191' => 'din', 'Dinv35851' => 'din', 'Dinv37377' => 'din', 'Duzib084G1285' => 'dzi', 'Duzib093G1442' => 'dzi', 'Duzib106G0312' => 'dzi', 'Duzib128G0195' => 'dzi', 'Duzib128G1774' => 'dzi', 'Duzib205G0307' => 'dzi', 'ECA232G1017' => 'eca', 'ECA233G0026' => 'eca', 'ECA238G1894' => 'eca', 'EL10Ac3g05671' => 'bvu', 'FAN01G3096' => 'fan', 'FAN02G1334' => 'fan', 'FAN03G1501' => 'fan', 'FAN03G2853' => 'fan', 'FAN04G1390' => 'fan', 'FAN05G3094' => 'fan', 'FAN05G4674' => 'fan', 'FAN06G2543' => 'fan', 'FAN06G4519' => 'fan', 'FAN08G0781' => 'fan', 'FAN09G0531' => 'fan', 'FAN09G4589' => 'fan', 'FAN10G2695' => 'fan', 'FAN11G1166' => 'fan', 'FAN13G3063' => 'fan', 'FAN14G4889' => 'fan', 'FAN17G1890' => 'fan', 'FAN18G0594' => 'fan', 'FvH4_2g09804' => 'fve', 'FvH4_5g01720' => 'fve', 'FvH4_6g17440' => 'fve', 'FvH4_6g28801' => 'fve', 'FvH4_7g29120' => 'fve', 'Glyma.03G189300' => 'gma', 'Glyma.10G066500' => 'gma', 'Glyma.13G151600' => 'gma', 'Glyma.19G189600' => 'gma', 'Gohir.A01G210920' => 'ghi', 'Gohir.A09G142700' => 'ghi', 'Gohir.A09G180100' => 'ghi', 'Gohir.A11G322500' => 'ghi', 'Gohir.D01G199701' => 'ghi', 'Gohir.D09G138900' => 'ghi', 'Gohir.D11G341600' => 'ghi', 'Gorai.002G244300' => 'gra', 'Gorai.006G159400' => 'gra', 'Gorai.007G371600' => 'gra', 'GSVIVG01010601001' => 'vvi', 'GSVIVG01033743001' => 'vvi', 'GSVIVG01034676001' => 'vvi', 'HanXRQChr01g0004831' => 'han', 'HanXRQChr09g0253781' => 'han', 'HanXRQChr10g0281991' => 'han', 'HanXRQChr10g0282021' => 'han', 'HanXRQChr13g0393681' => 'han', 'HanXRQChr15g0495621' => 'han', 'Haze_19509' => 'cav', 'Haze_27009' => 'cav', 'Hma1.2p1_0084F.1_g042980' => 'hma', 'HPP92_017898' => 'vpl', 'HPP92_017901' => 'vpl', 'HPP92_019028' => 'vpl', 'Hund04729' => 'sun', 'Hund11761' => 'sun', 'Hund28787' => 'sun', 'Lalb_Chr01g0018451' => 'lal', 'Lalb_Chr04g0261331' => 'lal', 'Lalb_Chr04g0261341' => 'lal', 'Lalb_Chr15g0076461' => 'lal', 'Lalb_Chr20g0112301' => 'lal', 'Lalb_Chr25g0288741' => 'lal', 'Lj1A994T59' => 'lonja', 'Lj2A193T57' => 'lonja', 'Lj2C26T1' => 'lonja', 'Lj2g0024206' => 'lja', 'Lj4g0018292' => 'lja', 'Lj8A26G45' => 'lonja', 'Lsat_1_v5_gn_2_131641' => 'lsa', 'Lsat_1_v5_gn_8_7001' => 'lsa', 'Lsat_1_v5_gn_9_54240' => 'lsa', 'Manes.01G065600' => 'mes', 'Manes.02G026400' => 'mes', 'Manes.02G169200' => 'mes', 'Manes.06G145400' => 'mes', 'Mapoly0055s0009' => 'mpo', 'Mapoly0084s0003' => 'mpo', 'MBI04_g42403_MAGBIO' => 'mbi', 'MBI12_g15166_MAGBIO' => 'mbi', 'MBI13_g02428_MAGBIO' => 'mbi', 'MBI13_g42057_MAGBIO' => 'mbi', 'MCO13G546' => 'mco', 'MD00G1145600' => 'mdo', 'MD04G1065300' => 'mdo', 'MD07G1266300' => 'mdo', 'MD12G1100700' => 'mdo', 'MD14G1094900' => 'mdo', 'Medtr1g061670' => 'mtr', 'Medtr4g104930' => 'mtr', 'Medtr7g103320' => 'mtr', 'MELO3C009419.2' => 'cme', 'MELO3C024506.2' => 'cme', 'Migut.I00133' => 'egut', 'Migut.O00209' => 'egut', 'MSTRG.12009' => 'ama', 'MSTRG.13827' => 'ama', 'MSTRG.25581' => 'ama', 'Nitab4.5_0000132g0300' => 'nta', 'Nitab4.5_0000381g0400' => 'nta', 'Nitab4.5_0000680g0080' => 'nta', 'Nitab4.5_0006314g0020' => 'nta', 'Nitab4.5_0009127g0050' => 'nta', 'Nitab4.5_0009405g0030' => 'nta', 'Nitab4.5_0016013g0010' => 'nta', 'Nn1g01389' => 'nnu', 'Nn2g15908' => 'nnu', 'Nn6g34218' => 'nnu', 'Oeu011672.1' => 'oeu', 'Oeu028569.1' => 'oeu', 'Oeu037533.1' => 'oeu', 'Os05g0486700' => 'osa', 'Os07g0224000' => 'osa', 'Peaxi162Scf00110g00117' => 'pax', 'Peaxi162Scf00146g00514' => 'pax', 'Peaxi162Scf00638g00013' => 'pax', 'Peaxi162Scf02095g00010' => 'pax', 'PGR004G2557' => 'pgr', 'PGR031G0006' => 'pgr', 'PGR142G0677' => 'pgr', 'PGSC0003DMG400002729' => 'stu', 'PGSC0003DMG400011041' => 'stu', 'PGSC0003DMG400028271' => 'stu', 'Phvul.001G184700' => 'pvu', 'Phvul.007G224900' => 'pvu', 'Potri.003G123101' => 'ptr', 'Potri.004G085300' => 'ptr', 'Potri.012G139400' => 'ptr', 'Potri.012G139500' => 'ptr', 'Potri.015G141900' => 'ptr', 'Pp3c13_10770' => 'ppa', 'Pp3c1_16170' => 'ppa', 'Pp3c1_18930' => 'ppa', 'Pp3c27_6690' => 'ppa', 'Pp3c3_10840' => 'ppa', 'Pp3c3_8930' => 'ppa', 'Pp3c4_25160' => 'ppa', 'Pp3c4_25170' => 'ppa', 'PRCOL_00002004' => 'pco', 'Prupe.5G092800' => 'ppe', 'Prupe.7G121200' => 'ppe', 'Psat0ss1870g0040' => 'psa', 'Psat3g036920' => 'psa', 'Psat7g218680' => 'psa', 'PSO363G0001' => 'pso', 'PSO478G0162' => 'pso', 'PSO478G2206' => 'pso', 'PSO478G2364' => 'pso', 'PSO541G3256' => 'pso', 'PSO675G8248' => 'pso', 'QL04p040470' => 'qlo', 'QL07p041002' => 'qlo', 'QL07p041053' => 'qlo', 'QL12p017536' => 'qlo', 'RcHm_v2.0_Chr1g0313771' => 'rch', 'RcHm_v2.0_Chr1g0376871' => 'rch', 'RcHm_v2.0_Chr3g0471681' => 'rch', 'RcHm_v2.0_Chr7g0199011' => 'rch', 'Rhsim03G0084600' => 'rsi', 'Rhsim03G0178400' => 'rsi', 'Rhsim09G0197100' => 'rsi', 'Sabra03G0086800' => 'sbr', 'Sabra04G0056400' => 'sbr', 'Sabra12G0104600' => 'sbr', 'Sabra15G0152100' => 'sbr', 'SalBow1G7093' => 'sbo', 'SalBow1G7591' => 'sbo', 'Sc06g0002170' => 'sci', 'Sc09g0005640' => 'sci', 'Sc20g0001390' => 'sci', 'Sed0007956' => 'sed', 'Sed0014681' => 'sed', 'Sed0017178' => 'sed', 'Sed0025234' => 'sed', 'SEGI_03680' => 'sgi', 'SGA_v2.0_scaffold144G35968' => 'sas', 'SGA_v2.0_scaffold286G47082' => 'sas', 'SGA_v2.0_scaffold343G49462' => 'sas', 'SMO271G0053' => 'smo', 'SMO356G0568' => 'smo', 'Solyc09g008800.3' => 'sly', 'Solyc10g083740.3' => 'sly', 'Solyc10g085480.2' => 'sly', 'Sopen09g003590' => 'spe', 'Sopen10g034910' => 'spe', 'Sp4g18900' => 'spa', 'Sp5g09300' => 'spa', 'TAR374G1344' => 'tar', 'TAR623G0411' => 'tar', 'TAR633G0321' => 'tar', 'TAR636G2023' => 'tar', 'THA.LOC104805122' => 'tha', 'THA.LOC104823474' => 'tha', 'THA.LOC104826938' => 'tha', 'THA.LOC104827494' => 'tha', 'Thecc.03G172400' => 'tca', 'Thecc.05G078000' => 'tca', 'Thecc.10G094200' => 'tca', 'Thecc.10G126900' => 'tca', 'Thhalv10010779m.g' => 'esa', 'Thhalv10017341m.g' => 'esa', 'TPR.G26171' => 'tpr', 'TPR.G31506' => 'tpr', 'TPR.G5696' => 'tpr', 'TWI39G1062' => 'twi', 'TWI53G1091' => 'twi', 'TWI74G0046' => 'twi', 'TWI77G0861' => 'twi', 'unitig_26.g9137' => 'ugi', 'unitig_26.g9149' => 'ugi', 'unitig_749.g14207' => 'ugi', 'vmacro06708' => 'vma', 'vmacro07344' => 'vma', 'vmacro09849' => 'vma', 'VMungo0720G0249' => 'vmu', 'VMungo1383G2318' => 'vmu', 'Zm00001eb049720' => 'zma', 'Zm00001eb219320' => 'zma', 'Zm00001eb352180' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001933', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001933' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '342', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001933' ) ), 'genes' => array( 'A04p06490' => 'bna', 'A05p09250' => 'bna', 'A07p21370' => 'bna', 'A09p46080' => 'bna', 'A09p46100' => 'bna', 'Aa31LG10G7870' => 'aar', 'Aa31LG10G8230' => 'aar', 'Aa31LG2G18320' => 'aar', 'Aa31LG5G21820' => 'aar', 'Aa31sc438G10' => 'aar', 'Aa31sc528G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5175' => 'aag', 'Actinidia02033' => 'ach', 'Actinidia11317' => 'ach', 'Actinidia31812' => 'ach', 'Actinidia32881' => 'ach', 'Actinidia39865' => 'ach', 'Ah.13g068500' => 'amhyb', 'AL4G32800' => 'aly', 'AL5G33850' => 'aly', 'Aqoxy2G03338' => 'aox', 'Aqoxy2G03339' => 'aox', 'Aqoxy7G00409' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8FR7LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBE829' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDJ5Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2FUU3' => 'arhy', 'AT2G36620' => 'ath', 'AT3G53020' => 'ath', 'ATR0068G053' => 'atr', 'ATR0757G205' => 'atr', 'Atru.chr10.589' => 'acertr', 'Atru.chr6.654' => 'acertr', 'Atru.chr6.656' => 'acertr', 'AUR62010637' => 'cqu', 'AUR62016002' => 'cqu', 'AUR62017280' => 'cqu', 'AUR62021210' => 'cqu', 'AUR62041043' => 'cqu', 'BcaB01g00316' => 'bca', 'BcaB01g03822' => 'bca', 'BcaB02g08543' => 'bca', 'BcaB02g09345' => 'bca', 'BcaC01g05645' => 'bca', 'BcaC02g09196' => 'bca', 'BcaC02g11775' => 'bca', 'BcaC07g39666' => 'bca', 'BcaC08g44620' => 'bca', 'BolC3t14765H' => 'bol', 'BolC4t22802H' => 'bol', 'BolC4t25566H' => 'bol', 'BolC6t37280H' => 'bol', 'BolC8t50442H' => 'bol', 'BolC8t50444H' => 'bol', 'BolSC66t61252H' => 'bol', 'BraA04t16352Z' => 'bra', 'BraA05t19881Z' => 'bra', 'BraA07t29824Z' => 'bra', 'BraA09t40072Z' => 'bra', 'BraA09t40074Z' => 'bra', 'C03p23700' => 'bna', 'C04p11520' => 'bna', 'C04p39940' => 'bna', 'C06p20920' => 'bna', 'C08p28340' => 'bna', 'CAN.G512.6' => 'can', 'CAN.G541.19' => 'can', 'CAN.G738.9' => 'can', 'CAN.G824.51' => 'can', 'CANSAT80G0414' => 'cansat', 'CANSAT80G0745' => 'cansat', 'CANSAT80G1466' => 'cansat', 'CARHR130900' => 'chi', 'CARHR162910' => 'chi', 'Carub.0004s1844' => 'cru', 'Carub.0005s1952' => 'cru', 'Ca_08951_v3' => 'car', 'Ca_11607_v3' => 'car', 'Ca_12337_v3' => 'car', 'CBR_g26170' => 'cbr', 'CBR_g49765' => 'cbr', 'Cc00_g08920' => 'ccan', 'Cc02_g03280' => 'ccan', 'Cc06_g04980' => 'ccan', 'Cc08_g14140' => 'ccan', 'CDE02G2509' => 'cde', 'CDE07G0580' => 'cde', 'CDE11G0001' => 'cde', 'Cfa006190' => 'cfa', 'Ciclev10022601m.g' => 'ccl', 'Ciclev10023969m.g' => 'ccl', 'CiPaw.10G003400' => 'cil', 'CiPaw.11G139900' => 'cil', 'CiPaw.12G097300' => 'cil', 'CiPaw.13G034900' => 'cil', 'ClCG04G009670' => 'cla', 'ClCG10G019550' => 'cla', 'COL.COLO4_14277' => 'col', 'COL.COLO4_22283' => 'col', 'Cpa.g.sc30.44' => 'cpa', 'Cpa.g.sc5.107' => 'cpa', 'Cpa.g.sc841.1' => 'cpa', 'Cre09.g391097' => 'cre', 'CsaV3_3G036650' => 'csa', 'CsaV3_6G040310' => 'csa', 'CSS0000130' => 'camsi', 'CSS0039458' => 'camsi', 'DCAR_017637' => 'dca', 'DCAR_020232' => 'dca', 'DCAR_020788' => 'dca', 'Dinv28467' => 'din', 'Dinv35191' => 'din', 'Dinv35851' => 'din', 'Dinv37377' => 'din', 'Duzib084G1285' => 'dzi', 'Duzib093G1442' => 'dzi', 'Duzib106G0312' => 'dzi', 'Duzib128G0195' => 'dzi', 'Duzib128G1774' => 'dzi', 'Duzib205G0307' => 'dzi', 'ECA232G1017' => 'eca', 'ECA233G0026' => 'eca', 'ECA238G1894' => 'eca', 'EL10Ac3g05671' => 'bvu', 'FAN01G3096' => 'fan', 'FAN02G1334' => 'fan', 'FAN03G1501' => 'fan', 'FAN03G2853' => 'fan', 'FAN04G1390' => 'fan', 'FAN05G3094' => 'fan', 'FAN05G4674' => 'fan', 'FAN06G2543' => 'fan', 'FAN06G4519' => 'fan', 'FAN08G0781' => 'fan', 'FAN09G0531' => 'fan', 'FAN09G4589' => 'fan', 'FAN10G2695' => 'fan', 'FAN11G1166' => 'fan', 'FAN13G3063' => 'fan', 'FAN14G4889' => 'fan', 'FAN17G1890' => 'fan', 'FAN18G0594' => 'fan', 'FvH4_2g09804' => 'fve', 'FvH4_5g01720' => 'fve', 'FvH4_6g17440' => 'fve', 'FvH4_6g28801' => 'fve', 'FvH4_7g29120' => 'fve', 'Glyma.03G189300' => 'gma', 'Glyma.10G066500' => 'gma', 'Glyma.13G151600' => 'gma', 'Glyma.19G189600' => 'gma', 'Gohir.A01G210920' => 'ghi', 'Gohir.A09G142700' => 'ghi', 'Gohir.A09G180100' => 'ghi', 'Gohir.A11G322500' => 'ghi', 'Gohir.D01G199701' => 'ghi', 'Gohir.D09G138900' => 'ghi', 'Gohir.D11G341600' => 'ghi', 'Gorai.002G244300' => 'gra', 'Gorai.006G159400' => 'gra', 'Gorai.007G371600' => 'gra', 'GSVIVG01010601001' => 'vvi', 'GSVIVG01033743001' => 'vvi', 'GSVIVG01034676001' => 'vvi', 'HanXRQChr01g0004831' => 'han', 'HanXRQChr09g0253781' => 'han', 'HanXRQChr10g0281991' => 'han', 'HanXRQChr10g0282021' => 'han', 'HanXRQChr13g0393681' => 'han', 'HanXRQChr15g0495621' => 'han', 'Haze_19509' => 'cav', 'Haze_27009' => 'cav', 'Hma1.2p1_0084F.1_g042980' => 'hma', 'HPP92_017898' => 'vpl', 'HPP92_017901' => 'vpl', 'HPP92_019028' => 'vpl', 'Hund04729' => 'sun', 'Hund11761' => 'sun', 'Hund28787' => 'sun', 'Lalb_Chr01g0018451' => 'lal', 'Lalb_Chr04g0261331' => 'lal', 'Lalb_Chr04g0261341' => 'lal', 'Lalb_Chr15g0076461' => 'lal', 'Lalb_Chr20g0112301' => 'lal', 'Lalb_Chr25g0288741' => 'lal', 'Lj1A994T59' => 'lonja', 'Lj2A193T57' => 'lonja', 'Lj2C26T1' => 'lonja', 'Lj2g0024206' => 'lja', 'Lj4g0018292' => 'lja', 'Lj8A26G45' => 'lonja', 'Lsat_1_v5_gn_2_131641' => 'lsa', 'Lsat_1_v5_gn_8_7001' => 'lsa', 'Lsat_1_v5_gn_9_54240' => 'lsa', 'Manes.01G065600' => 'mes', 'Manes.02G026400' => 'mes', 'Manes.02G169200' => 'mes', 'Manes.06G145400' => 'mes', 'Mapoly0055s0009' => 'mpo', 'Mapoly0084s0003' => 'mpo', 'MBI04_g42403_MAGBIO' => 'mbi', 'MBI12_g15166_MAGBIO' => 'mbi', 'MBI13_g02428_MAGBIO' => 'mbi', 'MBI13_g42057_MAGBIO' => 'mbi', 'MCO13G546' => 'mco', 'MD00G1145600' => 'mdo', 'MD04G1065300' => 'mdo', 'MD07G1266300' => 'mdo', 'MD12G1100700' => 'mdo', 'MD14G1094900' => 'mdo', 'Medtr1g061670' => 'mtr', 'Medtr4g104930' => 'mtr', 'Medtr7g103320' => 'mtr', 'MELO3C009419.2' => 'cme', 'MELO3C024506.2' => 'cme', 'Migut.I00133' => 'egut', 'Migut.O00209' => 'egut', 'MSTRG.12009' => 'ama', 'MSTRG.13827' => 'ama', 'MSTRG.25581' => 'ama', 'Nitab4.5_0000132g0300' => 'nta', 'Nitab4.5_0000381g0400' => 'nta', 'Nitab4.5_0000680g0080' => 'nta', 'Nitab4.5_0006314g0020' => 'nta', 'Nitab4.5_0009127g0050' => 'nta', 'Nitab4.5_0009405g0030' => 'nta', 'Nitab4.5_0016013g0010' => 'nta', 'Nn1g01389' => 'nnu', 'Nn2g15908' => 'nnu', 'Nn6g34218' => 'nnu', 'Oeu011672.1' => 'oeu', 'Oeu028569.1' => 'oeu', 'Oeu037533.1' => 'oeu', 'Os05g0486700' => 'osa', 'Os07g0224000' => 'osa', 'Peaxi162Scf00110g00117' => 'pax', 'Peaxi162Scf00146g00514' => 'pax', 'Peaxi162Scf00638g00013' => 'pax', 'Peaxi162Scf02095g00010' => 'pax', 'PGR004G2557' => 'pgr', 'PGR031G0006' => 'pgr', 'PGR142G0677' => 'pgr', 'PGSC0003DMG400002729' => 'stu', 'PGSC0003DMG400011041' => 'stu', 'PGSC0003DMG400028271' => 'stu', 'Phvul.001G184700' => 'pvu', 'Phvul.007G224900' => 'pvu', 'Potri.003G123101' => 'ptr', 'Potri.004G085300' => 'ptr', 'Potri.012G139400' => 'ptr', 'Potri.012G139500' => 'ptr', 'Potri.015G141900' => 'ptr', 'Pp3c13_10770' => 'ppa', 'Pp3c1_16170' => 'ppa', 'Pp3c1_18930' => 'ppa', 'Pp3c27_6690' => 'ppa', 'Pp3c3_10840' => 'ppa', 'Pp3c3_8930' => 'ppa', 'Pp3c4_25160' => 'ppa', 'Pp3c4_25170' => 'ppa', 'PRCOL_00002004' => 'pco', 'Prupe.5G092800' => 'ppe', 'Prupe.7G121200' => 'ppe', 'Psat0ss1870g0040' => 'psa', 'Psat3g036920' => 'psa', 'Psat7g218680' => 'psa', 'PSO363G0001' => 'pso', 'PSO478G0162' => 'pso', 'PSO478G2206' => 'pso', 'PSO478G2364' => 'pso', 'PSO541G3256' => 'pso', 'PSO675G8248' => 'pso', 'QL04p040470' => 'qlo', 'QL07p041002' => 'qlo', 'QL07p041053' => 'qlo', 'QL12p017536' => 'qlo', 'RcHm_v2.0_Chr1g0313771' => 'rch', 'RcHm_v2.0_Chr1g0376871' => 'rch', 'RcHm_v2.0_Chr3g0471681' => 'rch', 'RcHm_v2.0_Chr7g0199011' => 'rch', 'Rhsim03G0084600' => 'rsi', 'Rhsim03G0178400' => 'rsi', 'Rhsim09G0197100' => 'rsi', 'Sabra03G0086800' => 'sbr', 'Sabra04G0056400' => 'sbr', 'Sabra12G0104600' => 'sbr', 'Sabra15G0152100' => 'sbr', 'SalBow1G7093' => 'sbo', 'SalBow1G7591' => 'sbo', 'Sc06g0002170' => 'sci', 'Sc09g0005640' => 'sci', 'Sc20g0001390' => 'sci', 'Sed0007956' => 'sed', 'Sed0014681' => 'sed', 'Sed0017178' => 'sed', 'Sed0025234' => 'sed', 'SEGI_03680' => 'sgi', 'SGA_v2.0_scaffold144G35968' => 'sas', 'SGA_v2.0_scaffold286G47082' => 'sas', 'SGA_v2.0_scaffold343G49462' => 'sas', 'SMO271G0053' => 'smo', 'SMO356G0568' => 'smo', 'Solyc09g008800.3' => 'sly', 'Solyc10g083740.3' => 'sly', 'Solyc10g085480.2' => 'sly', 'Sopen09g003590' => 'spe', 'Sopen10g034910' => 'spe', 'Sp4g18900' => 'spa', 'Sp5g09300' => 'spa', 'TAR374G1344' => 'tar', 'TAR623G0411' => 'tar', 'TAR633G0321' => 'tar', 'TAR636G2023' => 'tar', 'THA.LOC104805122' => 'tha', 'THA.LOC104823474' => 'tha', 'THA.LOC104826938' => 'tha', 'THA.LOC104827494' => 'tha', 'Thecc.03G172400' => 'tca', 'Thecc.05G078000' => 'tca', 'Thecc.10G094200' => 'tca', 'Thecc.10G126900' => 'tca', 'Thhalv10010779m.g' => 'esa', 'Thhalv10017341m.g' => 'esa', 'TPR.G26171' => 'tpr', 'TPR.G31506' => 'tpr', 'TPR.G5696' => 'tpr', 'TWI39G1062' => 'twi', 'TWI53G1091' => 'twi', 'TWI74G0046' => 'twi', 'TWI77G0861' => 'twi', 'unitig_26.g9137' => 'ugi', 'unitig_26.g9149' => 'ugi', 'unitig_749.g14207' => 'ugi', 'vmacro06708' => 'vma', 'vmacro07344' => 'vma', 'vmacro09849' => 'vma', 'VMungo0720G0249' => 'vmu', 'VMungo1383G2318' => 'vmu', 'Zm00001eb049720' => 'zma', 'Zm00001eb219320' => 'zma', 'Zm00001eb352180' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001933' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001933' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001933' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001933' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '342', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p06490' => 'bna', 'A05p09250' => 'bna', 'A07p21370' => 'bna', 'A09p46080' => 'bna', 'A09p46100' => 'bna', 'Aa31LG10G7870' => 'aar', 'Aa31LG10G8230' => 'aar', 'Aa31LG2G18320' => 'aar', 'Aa31LG5G21820' => 'aar', 'Aa31sc438G10' => 'aar', 'Aa31sc528G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5175' => 'aag', 'Actinidia02033' => 'ach', 'Actinidia11317' => 'ach', 'Actinidia31812' => 'ach', 'Actinidia32881' => 'ach', 'Actinidia39865' => 'ach', 'Ah.13g068500' => 'amhyb', 'AL4G32800' => 'aly', 'AL5G33850' => 'aly', 'Aqoxy2G03338' => 'aox', 'Aqoxy2G03339' => 'aox', 'Aqoxy7G00409' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8FR7LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBE829' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDJ5Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2FUU3' => 'arhy', 'AT2G36620' => 'ath', 'AT3G53020' => 'ath', 'ATR0068G053' => 'atr', 'ATR0757G205' => 'atr', 'Atru.chr10.589' => 'acertr', 'Atru.chr6.654' => 'acertr', 'Atru.chr6.656' => 'acertr', 'AUR62010637' => 'cqu', 'AUR62016002' => 'cqu', 'AUR62017280' => 'cqu', 'AUR62021210' => 'cqu', 'AUR62041043' => 'cqu', 'BcaB01g00316' => 'bca', 'BcaB01g03822' => 'bca', 'BcaB02g08543' => 'bca', 'BcaB02g09345' => 'bca', 'BcaC01g05645' => 'bca', 'BcaC02g09196' => 'bca', 'BcaC02g11775' => 'bca', 'BcaC07g39666' => 'bca', 'BcaC08g44620' => 'bca', 'BolC3t14765H' => 'bol', 'BolC4t22802H' => 'bol', 'BolC4t25566H' => 'bol', 'BolC6t37280H' => 'bol', 'BolC8t50442H' => 'bol', 'BolC8t50444H' => 'bol', 'BolSC66t61252H' => 'bol', 'BraA04t16352Z' => 'bra', 'BraA05t19881Z' => 'bra', 'BraA07t29824Z' => 'bra', 'BraA09t40072Z' => 'bra', 'BraA09t40074Z' => 'bra', 'C03p23700' => 'bna', 'C04p11520' => 'bna', 'C04p39940' => 'bna', 'C06p20920' => 'bna', 'C08p28340' => 'bna', 'CAN.G512.6' => 'can', 'CAN.G541.19' => 'can', 'CAN.G738.9' => 'can', 'CAN.G824.51' => 'can', 'CANSAT80G0414' => 'cansat', 'CANSAT80G0745' => 'cansat', 'CANSAT80G1466' => 'cansat', 'CARHR130900' => 'chi', 'CARHR162910' => 'chi', 'Carub.0004s1844' => 'cru', 'Carub.0005s1952' => 'cru', 'Ca_08951_v3' => 'car', 'Ca_11607_v3' => 'car', 'Ca_12337_v3' => 'car', 'CBR_g26170' => 'cbr', 'CBR_g49765' => 'cbr', 'Cc00_g08920' => 'ccan', 'Cc02_g03280' => 'ccan', 'Cc06_g04980' => 'ccan', 'Cc08_g14140' => 'ccan', 'CDE02G2509' => 'cde', 'CDE07G0580' => 'cde', 'CDE11G0001' => 'cde', 'Cfa006190' => 'cfa', 'Ciclev10022601m.g' => 'ccl', 'Ciclev10023969m.g' => 'ccl', 'CiPaw.10G003400' => 'cil', 'CiPaw.11G139900' => 'cil', 'CiPaw.12G097300' => 'cil', 'CiPaw.13G034900' => 'cil', 'ClCG04G009670' => 'cla', 'ClCG10G019550' => 'cla', 'COL.COLO4_14277' => 'col', 'COL.COLO4_22283' => 'col', 'Cpa.g.sc30.44' => 'cpa', 'Cpa.g.sc5.107' => 'cpa', 'Cpa.g.sc841.1' => 'cpa', 'Cre09.g391097' => 'cre', 'CsaV3_3G036650' => 'csa', 'CsaV3_6G040310' => 'csa', 'CSS0000130' => 'camsi', 'CSS0039458' => 'camsi', 'DCAR_017637' => 'dca', 'DCAR_020232' => 'dca', 'DCAR_020788' => 'dca', 'Dinv28467' => 'din', 'Dinv35191' => 'din', 'Dinv35851' => 'din', 'Dinv37377' => 'din', 'Duzib084G1285' => 'dzi', 'Duzib093G1442' => 'dzi', 'Duzib106G0312' => 'dzi', 'Duzib128G0195' => 'dzi', 'Duzib128G1774' => 'dzi', 'Duzib205G0307' => 'dzi', 'ECA232G1017' => 'eca', 'ECA233G0026' => 'eca', 'ECA238G1894' => 'eca', 'EL10Ac3g05671' => 'bvu', 'FAN01G3096' => 'fan', 'FAN02G1334' => 'fan', 'FAN03G1501' => 'fan', 'FAN03G2853' => 'fan', 'FAN04G1390' => 'fan', 'FAN05G3094' => 'fan', 'FAN05G4674' => 'fan', 'FAN06G2543' => 'fan', 'FAN06G4519' => 'fan', 'FAN08G0781' => 'fan', 'FAN09G0531' => 'fan', 'FAN09G4589' => 'fan', 'FAN10G2695' => 'fan', 'FAN11G1166' => 'fan', 'FAN13G3063' => 'fan', 'FAN14G4889' => 'fan', 'FAN17G1890' => 'fan', 'FAN18G0594' => 'fan', 'FvH4_2g09804' => 'fve', 'FvH4_5g01720' => 'fve', 'FvH4_6g17440' => 'fve', 'FvH4_6g28801' => 'fve', 'FvH4_7g29120' => 'fve', 'Glyma.03G189300' => 'gma', 'Glyma.10G066500' => 'gma', 'Glyma.13G151600' => 'gma', 'Glyma.19G189600' => 'gma', 'Gohir.A01G210920' => 'ghi', 'Gohir.A09G142700' => 'ghi', 'Gohir.A09G180100' => 'ghi', 'Gohir.A11G322500' => 'ghi', 'Gohir.D01G199701' => 'ghi', 'Gohir.D09G138900' => 'ghi', 'Gohir.D11G341600' => 'ghi', 'Gorai.002G244300' => 'gra', 'Gorai.006G159400' => 'gra', 'Gorai.007G371600' => 'gra', 'GSVIVG01010601001' => 'vvi', 'GSVIVG01033743001' => 'vvi', 'GSVIVG01034676001' => 'vvi', 'HanXRQChr01g0004831' => 'han', 'HanXRQChr09g0253781' => 'han', 'HanXRQChr10g0281991' => 'han', 'HanXRQChr10g0282021' => 'han', 'HanXRQChr13g0393681' => 'han', 'HanXRQChr15g0495621' => 'han', 'Haze_19509' => 'cav', 'Haze_27009' => 'cav', 'Hma1.2p1_0084F.1_g042980' => 'hma', 'HPP92_017898' => 'vpl', 'HPP92_017901' => 'vpl', 'HPP92_019028' => 'vpl', 'Hund04729' => 'sun', 'Hund11761' => 'sun', 'Hund28787' => 'sun', 'Lalb_Chr01g0018451' => 'lal', 'Lalb_Chr04g0261331' => 'lal', 'Lalb_Chr04g0261341' => 'lal', 'Lalb_Chr15g0076461' => 'lal', 'Lalb_Chr20g0112301' => 'lal', 'Lalb_Chr25g0288741' => 'lal', 'Lj1A994T59' => 'lonja', 'Lj2A193T57' => 'lonja', 'Lj2C26T1' => 'lonja', 'Lj2g0024206' => 'lja', 'Lj4g0018292' => 'lja', 'Lj8A26G45' => 'lonja', 'Lsat_1_v5_gn_2_131641' => 'lsa', 'Lsat_1_v5_gn_8_7001' => 'lsa', 'Lsat_1_v5_gn_9_54240' => 'lsa', 'Manes.01G065600' => 'mes', 'Manes.02G026400' => 'mes', 'Manes.02G169200' => 'mes', 'Manes.06G145400' => 'mes', 'Mapoly0055s0009' => 'mpo', 'Mapoly0084s0003' => 'mpo', 'MBI04_g42403_MAGBIO' => 'mbi', 'MBI12_g15166_MAGBIO' => 'mbi', 'MBI13_g02428_MAGBIO' => 'mbi', 'MBI13_g42057_MAGBIO' => 'mbi', 'MCO13G546' => 'mco', 'MD00G1145600' => 'mdo', 'MD04G1065300' => 'mdo', 'MD07G1266300' => 'mdo', 'MD12G1100700' => 'mdo', 'MD14G1094900' => 'mdo', 'Medtr1g061670' => 'mtr', 'Medtr4g104930' => 'mtr', 'Medtr7g103320' => 'mtr', 'MELO3C009419.2' => 'cme', 'MELO3C024506.2' => 'cme', 'Migut.I00133' => 'egut', 'Migut.O00209' => 'egut', 'MSTRG.12009' => 'ama', 'MSTRG.13827' => 'ama', 'MSTRG.25581' => 'ama', 'Nitab4.5_0000132g0300' => 'nta', 'Nitab4.5_0000381g0400' => 'nta', 'Nitab4.5_0000680g0080' => 'nta', 'Nitab4.5_0006314g0020' => 'nta', 'Nitab4.5_0009127g0050' => 'nta', 'Nitab4.5_0009405g0030' => 'nta', 'Nitab4.5_0016013g0010' => 'nta', 'Nn1g01389' => 'nnu', 'Nn2g15908' => 'nnu', 'Nn6g34218' => 'nnu', 'Oeu011672.1' => 'oeu', 'Oeu028569.1' => 'oeu', 'Oeu037533.1' => 'oeu', 'Os05g0486700' => 'osa', 'Os07g0224000' => 'osa', 'Peaxi162Scf00110g00117' => 'pax', 'Peaxi162Scf00146g00514' => 'pax', 'Peaxi162Scf00638g00013' => 'pax', 'Peaxi162Scf02095g00010' => 'pax', 'PGR004G2557' => 'pgr', 'PGR031G0006' => 'pgr', 'PGR142G0677' => 'pgr', 'PGSC0003DMG400002729' => 'stu', 'PGSC0003DMG400011041' => 'stu', 'PGSC0003DMG400028271' => 'stu', 'Phvul.001G184700' => 'pvu', 'Phvul.007G224900' => 'pvu', 'Potri.003G123101' => 'ptr', 'Potri.004G085300' => 'ptr', 'Potri.012G139400' => 'ptr', 'Potri.012G139500' => 'ptr', 'Potri.015G141900' => 'ptr', 'Pp3c13_10770' => 'ppa', 'Pp3c1_16170' => 'ppa', 'Pp3c1_18930' => 'ppa', 'Pp3c27_6690' => 'ppa', 'Pp3c3_10840' => 'ppa', 'Pp3c3_8930' => 'ppa', 'Pp3c4_25160' => 'ppa', 'Pp3c4_25170' => 'ppa', 'PRCOL_00002004' => 'pco', 'Prupe.5G092800' => 'ppe', 'Prupe.7G121200' => 'ppe', 'Psat0ss1870g0040' => 'psa', 'Psat3g036920' => 'psa', 'Psat7g218680' => 'psa', 'PSO363G0001' => 'pso', 'PSO478G0162' => 'pso', 'PSO478G2206' => 'pso', 'PSO478G2364' => 'pso', 'PSO541G3256' => 'pso', 'PSO675G8248' => 'pso', 'QL04p040470' => 'qlo', 'QL07p041002' => 'qlo', 'QL07p041053' => 'qlo', 'QL12p017536' => 'qlo', 'RcHm_v2.0_Chr1g0313771' => 'rch', 'RcHm_v2.0_Chr1g0376871' => 'rch', 'RcHm_v2.0_Chr3g0471681' => 'rch', 'RcHm_v2.0_Chr7g0199011' => 'rch', 'Rhsim03G0084600' => 'rsi', 'Rhsim03G0178400' => 'rsi', 'Rhsim09G0197100' => 'rsi', 'Sabra03G0086800' => 'sbr', 'Sabra04G0056400' => 'sbr', 'Sabra12G0104600' => 'sbr', 'Sabra15G0152100' => 'sbr', 'SalBow1G7093' => 'sbo', 'SalBow1G7591' => 'sbo', 'Sc06g0002170' => 'sci', 'Sc09g0005640' => 'sci', 'Sc20g0001390' => 'sci', 'Sed0007956' => 'sed', 'Sed0014681' => 'sed', 'Sed0017178' => 'sed', 'Sed0025234' => 'sed', 'SEGI_03680' => 'sgi', 'SGA_v2.0_scaffold144G35968' => 'sas', 'SGA_v2.0_scaffold286G47082' => 'sas', 'SGA_v2.0_scaffold343G49462' => 'sas', 'SMO271G0053' => 'smo', 'SMO356G0568' => 'smo', 'Solyc09g008800.3' => 'sly', 'Solyc10g083740.3' => 'sly', 'Solyc10g085480.2' => 'sly', 'Sopen09g003590' => 'spe', 'Sopen10g034910' => 'spe', 'Sp4g18900' => 'spa', 'Sp5g09300' => 'spa', 'TAR374G1344' => 'tar', 'TAR623G0411' => 'tar', 'TAR633G0321' => 'tar', 'TAR636G2023' => 'tar', 'THA.LOC104805122' => 'tha', 'THA.LOC104823474' => 'tha', 'THA.LOC104826938' => 'tha', 'THA.LOC104827494' => 'tha', 'Thecc.03G172400' => 'tca', 'Thecc.05G078000' => 'tca', 'Thecc.10G094200' => 'tca', 'Thecc.10G126900' => 'tca', 'Thhalv10010779m.g' => 'esa', 'Thhalv10017341m.g' => 'esa', 'TPR.G26171' => 'tpr', 'TPR.G31506' => 'tpr', 'TPR.G5696' => 'tpr', 'TWI39G1062' => 'twi', 'TWI53G1091' => 'twi', 'TWI74G0046' => 'twi', 'TWI77G0861' => 'twi', 'unitig_26.g9137' => 'ugi', 'unitig_26.g9149' => 'ugi', 'unitig_749.g14207' => 'ugi', 'vmacro06708' => 'vma', 'vmacro07344' => 'vma', 'vmacro09849' => 'vma', 'VMungo0720G0249' => 'vmu', 'VMungo1383G2318' => 'vmu', 'Zm00001eb049720' => 'zma', 'Zm00001eb219320' => 'zma', 'Zm00001eb352180' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001933', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001933' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '342', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001933' ) ), 'genes' => array( 'A04p06490' => 'bna', 'A05p09250' => 'bna', 'A07p21370' => 'bna', 'A09p46080' => 'bna', 'A09p46100' => 'bna', 'Aa31LG10G7870' => 'aar', 'Aa31LG10G8230' => 'aar', 'Aa31LG2G18320' => 'aar', 'Aa31LG5G21820' => 'aar', 'Aa31sc438G10' => 'aar', 'Aa31sc528G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5175' => 'aag', 'Actinidia02033' => 'ach', 'Actinidia11317' => 'ach', 'Actinidia31812' => 'ach', 'Actinidia32881' => 'ach', 'Actinidia39865' => 'ach', 'Ah.13g068500' => 'amhyb', 'AL4G32800' => 'aly', 'AL5G33850' => 'aly', 'Aqoxy2G03338' => 'aox', 'Aqoxy2G03339' => 'aox', 'Aqoxy7G00409' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8FR7LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBE829' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDJ5Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2FUU3' => 'arhy', 'AT2G36620' => 'ath', 'AT3G53020' => 'ath', 'ATR0068G053' => 'atr', 'ATR0757G205' => 'atr', 'Atru.chr10.589' => 'acertr', 'Atru.chr6.654' => 'acertr', 'Atru.chr6.656' => 'acertr', 'AUR62010637' => 'cqu', 'AUR62016002' => 'cqu', 'AUR62017280' => 'cqu', 'AUR62021210' => 'cqu', 'AUR62041043' => 'cqu', 'BcaB01g00316' => 'bca', 'BcaB01g03822' => 'bca', 'BcaB02g08543' => 'bca', 'BcaB02g09345' => 'bca', 'BcaC01g05645' => 'bca', 'BcaC02g09196' => 'bca', 'BcaC02g11775' => 'bca', 'BcaC07g39666' => 'bca', 'BcaC08g44620' => 'bca', 'BolC3t14765H' => 'bol', 'BolC4t22802H' => 'bol', 'BolC4t25566H' => 'bol', 'BolC6t37280H' => 'bol', 'BolC8t50442H' => 'bol', 'BolC8t50444H' => 'bol', 'BolSC66t61252H' => 'bol', 'BraA04t16352Z' => 'bra', 'BraA05t19881Z' => 'bra', 'BraA07t29824Z' => 'bra', 'BraA09t40072Z' => 'bra', 'BraA09t40074Z' => 'bra', 'C03p23700' => 'bna', 'C04p11520' => 'bna', 'C04p39940' => 'bna', 'C06p20920' => 'bna', 'C08p28340' => 'bna', 'CAN.G512.6' => 'can', 'CAN.G541.19' => 'can', 'CAN.G738.9' => 'can', 'CAN.G824.51' => 'can', 'CANSAT80G0414' => 'cansat', 'CANSAT80G0745' => 'cansat', 'CANSAT80G1466' => 'cansat', 'CARHR130900' => 'chi', 'CARHR162910' => 'chi', 'Carub.0004s1844' => 'cru', 'Carub.0005s1952' => 'cru', 'Ca_08951_v3' => 'car', 'Ca_11607_v3' => 'car', 'Ca_12337_v3' => 'car', 'CBR_g26170' => 'cbr', 'CBR_g49765' => 'cbr', 'Cc00_g08920' => 'ccan', 'Cc02_g03280' => 'ccan', 'Cc06_g04980' => 'ccan', 'Cc08_g14140' => 'ccan', 'CDE02G2509' => 'cde', 'CDE07G0580' => 'cde', 'CDE11G0001' => 'cde', 'Cfa006190' => 'cfa', 'Ciclev10022601m.g' => 'ccl', 'Ciclev10023969m.g' => 'ccl', 'CiPaw.10G003400' => 'cil', 'CiPaw.11G139900' => 'cil', 'CiPaw.12G097300' => 'cil', 'CiPaw.13G034900' => 'cil', 'ClCG04G009670' => 'cla', 'ClCG10G019550' => 'cla', 'COL.COLO4_14277' => 'col', 'COL.COLO4_22283' => 'col', 'Cpa.g.sc30.44' => 'cpa', 'Cpa.g.sc5.107' => 'cpa', 'Cpa.g.sc841.1' => 'cpa', 'Cre09.g391097' => 'cre', 'CsaV3_3G036650' => 'csa', 'CsaV3_6G040310' => 'csa', 'CSS0000130' => 'camsi', 'CSS0039458' => 'camsi', 'DCAR_017637' => 'dca', 'DCAR_020232' => 'dca', 'DCAR_020788' => 'dca', 'Dinv28467' => 'din', 'Dinv35191' => 'din', 'Dinv35851' => 'din', 'Dinv37377' => 'din', 'Duzib084G1285' => 'dzi', 'Duzib093G1442' => 'dzi', 'Duzib106G0312' => 'dzi', 'Duzib128G0195' => 'dzi', 'Duzib128G1774' => 'dzi', 'Duzib205G0307' => 'dzi', 'ECA232G1017' => 'eca', 'ECA233G0026' => 'eca', 'ECA238G1894' => 'eca', 'EL10Ac3g05671' => 'bvu', 'FAN01G3096' => 'fan', 'FAN02G1334' => 'fan', 'FAN03G1501' => 'fan', 'FAN03G2853' => 'fan', 'FAN04G1390' => 'fan', 'FAN05G3094' => 'fan', 'FAN05G4674' => 'fan', 'FAN06G2543' => 'fan', 'FAN06G4519' => 'fan', 'FAN08G0781' => 'fan', 'FAN09G0531' => 'fan', 'FAN09G4589' => 'fan', 'FAN10G2695' => 'fan', 'FAN11G1166' => 'fan', 'FAN13G3063' => 'fan', 'FAN14G4889' => 'fan', 'FAN17G1890' => 'fan', 'FAN18G0594' => 'fan', 'FvH4_2g09804' => 'fve', 'FvH4_5g01720' => 'fve', 'FvH4_6g17440' => 'fve', 'FvH4_6g28801' => 'fve', 'FvH4_7g29120' => 'fve', 'Glyma.03G189300' => 'gma', 'Glyma.10G066500' => 'gma', 'Glyma.13G151600' => 'gma', 'Glyma.19G189600' => 'gma', 'Gohir.A01G210920' => 'ghi', 'Gohir.A09G142700' => 'ghi', 'Gohir.A09G180100' => 'ghi', 'Gohir.A11G322500' => 'ghi', 'Gohir.D01G199701' => 'ghi', 'Gohir.D09G138900' => 'ghi', 'Gohir.D11G341600' => 'ghi', 'Gorai.002G244300' => 'gra', 'Gorai.006G159400' => 'gra', 'Gorai.007G371600' => 'gra', 'GSVIVG01010601001' => 'vvi', 'GSVIVG01033743001' => 'vvi', 'GSVIVG01034676001' => 'vvi', 'HanXRQChr01g0004831' => 'han', 'HanXRQChr09g0253781' => 'han', 'HanXRQChr10g0281991' => 'han', 'HanXRQChr10g0282021' => 'han', 'HanXRQChr13g0393681' => 'han', 'HanXRQChr15g0495621' => 'han', 'Haze_19509' => 'cav', 'Haze_27009' => 'cav', 'Hma1.2p1_0084F.1_g042980' => 'hma', 'HPP92_017898' => 'vpl', 'HPP92_017901' => 'vpl', 'HPP92_019028' => 'vpl', 'Hund04729' => 'sun', 'Hund11761' => 'sun', 'Hund28787' => 'sun', 'Lalb_Chr01g0018451' => 'lal', 'Lalb_Chr04g0261331' => 'lal', 'Lalb_Chr04g0261341' => 'lal', 'Lalb_Chr15g0076461' => 'lal', 'Lalb_Chr20g0112301' => 'lal', 'Lalb_Chr25g0288741' => 'lal', 'Lj1A994T59' => 'lonja', 'Lj2A193T57' => 'lonja', 'Lj2C26T1' => 'lonja', 'Lj2g0024206' => 'lja', 'Lj4g0018292' => 'lja', 'Lj8A26G45' => 'lonja', 'Lsat_1_v5_gn_2_131641' => 'lsa', 'Lsat_1_v5_gn_8_7001' => 'lsa', 'Lsat_1_v5_gn_9_54240' => 'lsa', 'Manes.01G065600' => 'mes', 'Manes.02G026400' => 'mes', 'Manes.02G169200' => 'mes', 'Manes.06G145400' => 'mes', 'Mapoly0055s0009' => 'mpo', 'Mapoly0084s0003' => 'mpo', 'MBI04_g42403_MAGBIO' => 'mbi', 'MBI12_g15166_MAGBIO' => 'mbi', 'MBI13_g02428_MAGBIO' => 'mbi', 'MBI13_g42057_MAGBIO' => 'mbi', 'MCO13G546' => 'mco', 'MD00G1145600' => 'mdo', 'MD04G1065300' => 'mdo', 'MD07G1266300' => 'mdo', 'MD12G1100700' => 'mdo', 'MD14G1094900' => 'mdo', 'Medtr1g061670' => 'mtr', 'Medtr4g104930' => 'mtr', 'Medtr7g103320' => 'mtr', 'MELO3C009419.2' => 'cme', 'MELO3C024506.2' => 'cme', 'Migut.I00133' => 'egut', 'Migut.O00209' => 'egut', 'MSTRG.12009' => 'ama', 'MSTRG.13827' => 'ama', 'MSTRG.25581' => 'ama', 'Nitab4.5_0000132g0300' => 'nta', 'Nitab4.5_0000381g0400' => 'nta', 'Nitab4.5_0000680g0080' => 'nta', 'Nitab4.5_0006314g0020' => 'nta', 'Nitab4.5_0009127g0050' => 'nta', 'Nitab4.5_0009405g0030' => 'nta', 'Nitab4.5_0016013g0010' => 'nta', 'Nn1g01389' => 'nnu', 'Nn2g15908' => 'nnu', 'Nn6g34218' => 'nnu', 'Oeu011672.1' => 'oeu', 'Oeu028569.1' => 'oeu', 'Oeu037533.1' => 'oeu', 'Os05g0486700' => 'osa', 'Os07g0224000' => 'osa', 'Peaxi162Scf00110g00117' => 'pax', 'Peaxi162Scf00146g00514' => 'pax', 'Peaxi162Scf00638g00013' => 'pax', 'Peaxi162Scf02095g00010' => 'pax', 'PGR004G2557' => 'pgr', 'PGR031G0006' => 'pgr', 'PGR142G0677' => 'pgr', 'PGSC0003DMG400002729' => 'stu', 'PGSC0003DMG400011041' => 'stu', 'PGSC0003DMG400028271' => 'stu', 'Phvul.001G184700' => 'pvu', 'Phvul.007G224900' => 'pvu', 'Potri.003G123101' => 'ptr', 'Potri.004G085300' => 'ptr', 'Potri.012G139400' => 'ptr', 'Potri.012G139500' => 'ptr', 'Potri.015G141900' => 'ptr', 'Pp3c13_10770' => 'ppa', 'Pp3c1_16170' => 'ppa', 'Pp3c1_18930' => 'ppa', 'Pp3c27_6690' => 'ppa', 'Pp3c3_10840' => 'ppa', 'Pp3c3_8930' => 'ppa', 'Pp3c4_25160' => 'ppa', 'Pp3c4_25170' => 'ppa', 'PRCOL_00002004' => 'pco', 'Prupe.5G092800' => 'ppe', 'Prupe.7G121200' => 'ppe', 'Psat0ss1870g0040' => 'psa', 'Psat3g036920' => 'psa', 'Psat7g218680' => 'psa', 'PSO363G0001' => 'pso', 'PSO478G0162' => 'pso', 'PSO478G2206' => 'pso', 'PSO478G2364' => 'pso', 'PSO541G3256' => 'pso', 'PSO675G8248' => 'pso', 'QL04p040470' => 'qlo', 'QL07p041002' => 'qlo', 'QL07p041053' => 'qlo', 'QL12p017536' => 'qlo', 'RcHm_v2.0_Chr1g0313771' => 'rch', 'RcHm_v2.0_Chr1g0376871' => 'rch', 'RcHm_v2.0_Chr3g0471681' => 'rch', 'RcHm_v2.0_Chr7g0199011' => 'rch', 'Rhsim03G0084600' => 'rsi', 'Rhsim03G0178400' => 'rsi', 'Rhsim09G0197100' => 'rsi', 'Sabra03G0086800' => 'sbr', 'Sabra04G0056400' => 'sbr', 'Sabra12G0104600' => 'sbr', 'Sabra15G0152100' => 'sbr', 'SalBow1G7093' => 'sbo', 'SalBow1G7591' => 'sbo', 'Sc06g0002170' => 'sci', 'Sc09g0005640' => 'sci', 'Sc20g0001390' => 'sci', 'Sed0007956' => 'sed', 'Sed0014681' => 'sed', 'Sed0017178' => 'sed', 'Sed0025234' => 'sed', 'SEGI_03680' => 'sgi', 'SGA_v2.0_scaffold144G35968' => 'sas', 'SGA_v2.0_scaffold286G47082' => 'sas', 'SGA_v2.0_scaffold343G49462' => 'sas', 'SMO271G0053' => 'smo', 'SMO356G0568' => 'smo', 'Solyc09g008800.3' => 'sly', 'Solyc10g083740.3' => 'sly', 'Solyc10g085480.2' => 'sly', 'Sopen09g003590' => 'spe', 'Sopen10g034910' => 'spe', 'Sp4g18900' => 'spa', 'Sp5g09300' => 'spa', 'TAR374G1344' => 'tar', 'TAR623G0411' => 'tar', 'TAR633G0321' => 'tar', 'TAR636G2023' => 'tar', 'THA.LOC104805122' => 'tha', 'THA.LOC104823474' => 'tha', 'THA.LOC104826938' => 'tha', 'THA.LOC104827494' => 'tha', 'Thecc.03G172400' => 'tca', 'Thecc.05G078000' => 'tca', 'Thecc.10G094200' => 'tca', 'Thecc.10G126900' => 'tca', 'Thhalv10010779m.g' => 'esa', 'Thhalv10017341m.g' => 'esa', 'TPR.G26171' => 'tpr', 'TPR.G31506' => 'tpr', 'TPR.G5696' => 'tpr', 'TWI39G1062' => 'twi', 'TWI53G1091' => 'twi', 'TWI74G0046' => 'twi', 'TWI77G0861' => 'twi', 'unitig_26.g9137' => 'ugi', 'unitig_26.g9149' => 'ugi', 'unitig_749.g14207' => 'ugi', 'vmacro06708' => 'vma', 'vmacro07344' => 'vma', 'vmacro09849' => 'vma', 'VMungo0720G0249' => 'vmu', 'VMungo1383G2318' => 'vmu', 'Zm00001eb049720' => 'zma', 'Zm00001eb219320' => 'zma', 'Zm00001eb352180' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001933' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001933' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001933' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001933' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '342', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p06490' => 'bna', 'A05p09250' => 'bna', 'A07p21370' => 'bna', 'A09p46080' => 'bna', 'A09p46100' => 'bna', 'Aa31LG10G7870' => 'aar', 'Aa31LG10G8230' => 'aar', 'Aa31LG2G18320' => 'aar', 'Aa31LG5G21820' => 'aar', 'Aa31sc438G10' => 'aar', 'Aa31sc528G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5175' => 'aag', 'Actinidia02033' => 'ach', 'Actinidia11317' => 'ach', 'Actinidia31812' => 'ach', 'Actinidia32881' => 'ach', 'Actinidia39865' => 'ach', 'Ah.13g068500' => 'amhyb', 'AL4G32800' => 'aly', 'AL5G33850' => 'aly', 'Aqoxy2G03338' => 'aox', 'Aqoxy2G03339' => 'aox', 'Aqoxy7G00409' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8FR7LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBE829' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDJ5Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2FUU3' => 'arhy', 'AT2G36620' => 'ath', 'AT3G53020' => 'ath', 'ATR0068G053' => 'atr', 'ATR0757G205' => 'atr', 'Atru.chr10.589' => 'acertr', 'Atru.chr6.654' => 'acertr', 'Atru.chr6.656' => 'acertr', 'AUR62010637' => 'cqu', 'AUR62016002' => 'cqu', 'AUR62017280' => 'cqu', 'AUR62021210' => 'cqu', 'AUR62041043' => 'cqu', 'BcaB01g00316' => 'bca', 'BcaB01g03822' => 'bca', 'BcaB02g08543' => 'bca', 'BcaB02g09345' => 'bca', 'BcaC01g05645' => 'bca', 'BcaC02g09196' => 'bca', 'BcaC02g11775' => 'bca', 'BcaC07g39666' => 'bca', 'BcaC08g44620' => 'bca', 'BolC3t14765H' => 'bol', 'BolC4t22802H' => 'bol', 'BolC4t25566H' => 'bol', 'BolC6t37280H' => 'bol', 'BolC8t50442H' => 'bol', 'BolC8t50444H' => 'bol', 'BolSC66t61252H' => 'bol', 'BraA04t16352Z' => 'bra', 'BraA05t19881Z' => 'bra', 'BraA07t29824Z' => 'bra', 'BraA09t40072Z' => 'bra', 'BraA09t40074Z' => 'bra', 'C03p23700' => 'bna', 'C04p11520' => 'bna', 'C04p39940' => 'bna', 'C06p20920' => 'bna', 'C08p28340' => 'bna', 'CAN.G512.6' => 'can', 'CAN.G541.19' => 'can', 'CAN.G738.9' => 'can', 'CAN.G824.51' => 'can', 'CANSAT80G0414' => 'cansat', 'CANSAT80G0745' => 'cansat', 'CANSAT80G1466' => 'cansat', 'CARHR130900' => 'chi', 'CARHR162910' => 'chi', 'Carub.0004s1844' => 'cru', 'Carub.0005s1952' => 'cru', 'Ca_08951_v3' => 'car', 'Ca_11607_v3' => 'car', 'Ca_12337_v3' => 'car', 'CBR_g26170' => 'cbr', 'CBR_g49765' => 'cbr', 'Cc00_g08920' => 'ccan', 'Cc02_g03280' => 'ccan', 'Cc06_g04980' => 'ccan', 'Cc08_g14140' => 'ccan', 'CDE02G2509' => 'cde', 'CDE07G0580' => 'cde', 'CDE11G0001' => 'cde', 'Cfa006190' => 'cfa', 'Ciclev10022601m.g' => 'ccl', 'Ciclev10023969m.g' => 'ccl', 'CiPaw.10G003400' => 'cil', 'CiPaw.11G139900' => 'cil', 'CiPaw.12G097300' => 'cil', 'CiPaw.13G034900' => 'cil', 'ClCG04G009670' => 'cla', 'ClCG10G019550' => 'cla', 'COL.COLO4_14277' => 'col', 'COL.COLO4_22283' => 'col', 'Cpa.g.sc30.44' => 'cpa', 'Cpa.g.sc5.107' => 'cpa', 'Cpa.g.sc841.1' => 'cpa', 'Cre09.g391097' => 'cre', 'CsaV3_3G036650' => 'csa', 'CsaV3_6G040310' => 'csa', 'CSS0000130' => 'camsi', 'CSS0039458' => 'camsi', 'DCAR_017637' => 'dca', 'DCAR_020232' => 'dca', 'DCAR_020788' => 'dca', 'Dinv28467' => 'din', 'Dinv35191' => 'din', 'Dinv35851' => 'din', 'Dinv37377' => 'din', 'Duzib084G1285' => 'dzi', 'Duzib093G1442' => 'dzi', 'Duzib106G0312' => 'dzi', 'Duzib128G0195' => 'dzi', 'Duzib128G1774' => 'dzi', 'Duzib205G0307' => 'dzi', 'ECA232G1017' => 'eca', 'ECA233G0026' => 'eca', 'ECA238G1894' => 'eca', 'EL10Ac3g05671' => 'bvu', 'FAN01G3096' => 'fan', 'FAN02G1334' => 'fan', 'FAN03G1501' => 'fan', 'FAN03G2853' => 'fan', 'FAN04G1390' => 'fan', 'FAN05G3094' => 'fan', 'FAN05G4674' => 'fan', 'FAN06G2543' => 'fan', 'FAN06G4519' => 'fan', 'FAN08G0781' => 'fan', 'FAN09G0531' => 'fan', 'FAN09G4589' => 'fan', 'FAN10G2695' => 'fan', 'FAN11G1166' => 'fan', 'FAN13G3063' => 'fan', 'FAN14G4889' => 'fan', 'FAN17G1890' => 'fan', 'FAN18G0594' => 'fan', 'FvH4_2g09804' => 'fve', 'FvH4_5g01720' => 'fve', 'FvH4_6g17440' => 'fve', 'FvH4_6g28801' => 'fve', 'FvH4_7g29120' => 'fve', 'Glyma.03G189300' => 'gma', 'Glyma.10G066500' => 'gma', 'Glyma.13G151600' => 'gma', 'Glyma.19G189600' => 'gma', 'Gohir.A01G210920' => 'ghi', 'Gohir.A09G142700' => 'ghi', 'Gohir.A09G180100' => 'ghi', 'Gohir.A11G322500' => 'ghi', 'Gohir.D01G199701' => 'ghi', 'Gohir.D09G138900' => 'ghi', 'Gohir.D11G341600' => 'ghi', 'Gorai.002G244300' => 'gra', 'Gorai.006G159400' => 'gra', 'Gorai.007G371600' => 'gra', 'GSVIVG01010601001' => 'vvi', 'GSVIVG01033743001' => 'vvi', 'GSVIVG01034676001' => 'vvi', 'HanXRQChr01g0004831' => 'han', 'HanXRQChr09g0253781' => 'han', 'HanXRQChr10g0281991' => 'han', 'HanXRQChr10g0282021' => 'han', 'HanXRQChr13g0393681' => 'han', 'HanXRQChr15g0495621' => 'han', 'Haze_19509' => 'cav', 'Haze_27009' => 'cav', 'Hma1.2p1_0084F.1_g042980' => 'hma', 'HPP92_017898' => 'vpl', 'HPP92_017901' => 'vpl', 'HPP92_019028' => 'vpl', 'Hund04729' => 'sun', 'Hund11761' => 'sun', 'Hund28787' => 'sun', 'Lalb_Chr01g0018451' => 'lal', 'Lalb_Chr04g0261331' => 'lal', 'Lalb_Chr04g0261341' => 'lal', 'Lalb_Chr15g0076461' => 'lal', 'Lalb_Chr20g0112301' => 'lal', 'Lalb_Chr25g0288741' => 'lal', 'Lj1A994T59' => 'lonja', 'Lj2A193T57' => 'lonja', 'Lj2C26T1' => 'lonja', 'Lj2g0024206' => 'lja', 'Lj4g0018292' => 'lja', 'Lj8A26G45' => 'lonja', 'Lsat_1_v5_gn_2_131641' => 'lsa', 'Lsat_1_v5_gn_8_7001' => 'lsa', 'Lsat_1_v5_gn_9_54240' => 'lsa', 'Manes.01G065600' => 'mes', 'Manes.02G026400' => 'mes', 'Manes.02G169200' => 'mes', 'Manes.06G145400' => 'mes', 'Mapoly0055s0009' => 'mpo', 'Mapoly0084s0003' => 'mpo', 'MBI04_g42403_MAGBIO' => 'mbi', 'MBI12_g15166_MAGBIO' => 'mbi', 'MBI13_g02428_MAGBIO' => 'mbi', 'MBI13_g42057_MAGBIO' => 'mbi', 'MCO13G546' => 'mco', 'MD00G1145600' => 'mdo', 'MD04G1065300' => 'mdo', 'MD07G1266300' => 'mdo', 'MD12G1100700' => 'mdo', 'MD14G1094900' => 'mdo', 'Medtr1g061670' => 'mtr', 'Medtr4g104930' => 'mtr', 'Medtr7g103320' => 'mtr', 'MELO3C009419.2' => 'cme', 'MELO3C024506.2' => 'cme', 'Migut.I00133' => 'egut', 'Migut.O00209' => 'egut', 'MSTRG.12009' => 'ama', 'MSTRG.13827' => 'ama', 'MSTRG.25581' => 'ama', 'Nitab4.5_0000132g0300' => 'nta', 'Nitab4.5_0000381g0400' => 'nta', 'Nitab4.5_0000680g0080' => 'nta', 'Nitab4.5_0006314g0020' => 'nta', 'Nitab4.5_0009127g0050' => 'nta', 'Nitab4.5_0009405g0030' => 'nta', 'Nitab4.5_0016013g0010' => 'nta', 'Nn1g01389' => 'nnu', 'Nn2g15908' => 'nnu', 'Nn6g34218' => 'nnu', 'Oeu011672.1' => 'oeu', 'Oeu028569.1' => 'oeu', 'Oeu037533.1' => 'oeu', 'Os05g0486700' => 'osa', 'Os07g0224000' => 'osa', 'Peaxi162Scf00110g00117' => 'pax', 'Peaxi162Scf00146g00514' => 'pax', 'Peaxi162Scf00638g00013' => 'pax', 'Peaxi162Scf02095g00010' => 'pax', 'PGR004G2557' => 'pgr', 'PGR031G0006' => 'pgr', 'PGR142G0677' => 'pgr', 'PGSC0003DMG400002729' => 'stu', 'PGSC0003DMG400011041' => 'stu', 'PGSC0003DMG400028271' => 'stu', 'Phvul.001G184700' => 'pvu', 'Phvul.007G224900' => 'pvu', 'Potri.003G123101' => 'ptr', 'Potri.004G085300' => 'ptr', 'Potri.012G139400' => 'ptr', 'Potri.012G139500' => 'ptr', 'Potri.015G141900' => 'ptr', 'Pp3c13_10770' => 'ppa', 'Pp3c1_16170' => 'ppa', 'Pp3c1_18930' => 'ppa', 'Pp3c27_6690' => 'ppa', 'Pp3c3_10840' => 'ppa', 'Pp3c3_8930' => 'ppa', 'Pp3c4_25160' => 'ppa', 'Pp3c4_25170' => 'ppa', 'PRCOL_00002004' => 'pco', 'Prupe.5G092800' => 'ppe', 'Prupe.7G121200' => 'ppe', 'Psat0ss1870g0040' => 'psa', 'Psat3g036920' => 'psa', 'Psat7g218680' => 'psa', 'PSO363G0001' => 'pso', 'PSO478G0162' => 'pso', 'PSO478G2206' => 'pso', 'PSO478G2364' => 'pso', 'PSO541G3256' => 'pso', 'PSO675G8248' => 'pso', 'QL04p040470' => 'qlo', 'QL07p041002' => 'qlo', 'QL07p041053' => 'qlo', 'QL12p017536' => 'qlo', 'RcHm_v2.0_Chr1g0313771' => 'rch', 'RcHm_v2.0_Chr1g0376871' => 'rch', 'RcHm_v2.0_Chr3g0471681' => 'rch', 'RcHm_v2.0_Chr7g0199011' => 'rch', 'Rhsim03G0084600' => 'rsi', 'Rhsim03G0178400' => 'rsi', 'Rhsim09G0197100' => 'rsi', 'Sabra03G0086800' => 'sbr', 'Sabra04G0056400' => 'sbr', 'Sabra12G0104600' => 'sbr', 'Sabra15G0152100' => 'sbr', 'SalBow1G7093' => 'sbo', 'SalBow1G7591' => 'sbo', 'Sc06g0002170' => 'sci', 'Sc09g0005640' => 'sci', 'Sc20g0001390' => 'sci', 'Sed0007956' => 'sed', 'Sed0014681' => 'sed', 'Sed0017178' => 'sed', 'Sed0025234' => 'sed', 'SEGI_03680' => 'sgi', 'SGA_v2.0_scaffold144G35968' => 'sas', 'SGA_v2.0_scaffold286G47082' => 'sas', 'SGA_v2.0_scaffold343G49462' => 'sas', 'SMO271G0053' => 'smo', 'SMO356G0568' => 'smo', 'Solyc09g008800.3' => 'sly', 'Solyc10g083740.3' => 'sly', 'Solyc10g085480.2' => 'sly', 'Sopen09g003590' => 'spe', 'Sopen10g034910' => 'spe', 'Sp4g18900' => 'spa', 'Sp5g09300' => 'spa', 'TAR374G1344' => 'tar', 'TAR623G0411' => 'tar', 'TAR633G0321' => 'tar', 'TAR636G2023' => 'tar', 'THA.LOC104805122' => 'tha', 'THA.LOC104823474' => 'tha', 'THA.LOC104826938' => 'tha', 'THA.LOC104827494' => 'tha', 'Thecc.03G172400' => 'tca', 'Thecc.05G078000' => 'tca', 'Thecc.10G094200' => 'tca', 'Thecc.10G126900' => 'tca', 'Thhalv10010779m.g' => 'esa', 'Thhalv10017341m.g' => 'esa', 'TPR.G26171' => 'tpr', 'TPR.G31506' => 'tpr', 'TPR.G5696' => 'tpr', 'TWI39G1062' => 'twi', 'TWI53G1091' => 'twi', 'TWI74G0046' => 'twi', 'TWI77G0861' => 'twi', 'unitig_26.g9137' => 'ugi', 'unitig_26.g9149' => 'ugi', 'unitig_749.g14207' => 'ugi', 'vmacro06708' => 'vma', 'vmacro07344' => 'vma', 'vmacro09849' => 'vma', 'VMungo0720G0249' => 'vmu', 'VMungo1383G2318' => 'vmu', 'Zm00001eb049720' => 'zma', 'Zm00001eb219320' => 'zma', 'Zm00001eb352180' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001933', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001933' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '342', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001933' ) ), 'genes' => array( 'A04p06490' => 'bna', 'A05p09250' => 'bna', 'A07p21370' => 'bna', 'A09p46080' => 'bna', 'A09p46100' => 'bna', 'Aa31LG10G7870' => 'aar', 'Aa31LG10G8230' => 'aar', 'Aa31LG2G18320' => 'aar', 'Aa31LG5G21820' => 'aar', 'Aa31sc438G10' => 'aar', 'Aa31sc528G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5175' => 'aag', 'Actinidia02033' => 'ach', 'Actinidia11317' => 'ach', 'Actinidia31812' => 'ach', 'Actinidia32881' => 'ach', 'Actinidia39865' => 'ach', 'Ah.13g068500' => 'amhyb', 'AL4G32800' => 'aly', 'AL5G33850' => 'aly', 'Aqoxy2G03338' => 'aox', 'Aqoxy2G03339' => 'aox', 'Aqoxy7G00409' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8FR7LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBE829' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDJ5Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2FUU3' => 'arhy', 'AT2G36620' => 'ath', 'AT3G53020' => 'ath', 'ATR0068G053' => 'atr', 'ATR0757G205' => 'atr', 'Atru.chr10.589' => 'acertr', 'Atru.chr6.654' => 'acertr', 'Atru.chr6.656' => 'acertr', 'AUR62010637' => 'cqu', 'AUR62016002' => 'cqu', 'AUR62017280' => 'cqu', 'AUR62021210' => 'cqu', 'AUR62041043' => 'cqu', 'BcaB01g00316' => 'bca', 'BcaB01g03822' => 'bca', 'BcaB02g08543' => 'bca', 'BcaB02g09345' => 'bca', 'BcaC01g05645' => 'bca', 'BcaC02g09196' => 'bca', 'BcaC02g11775' => 'bca', 'BcaC07g39666' => 'bca', 'BcaC08g44620' => 'bca', 'BolC3t14765H' => 'bol', 'BolC4t22802H' => 'bol', 'BolC4t25566H' => 'bol', 'BolC6t37280H' => 'bol', 'BolC8t50442H' => 'bol', 'BolC8t50444H' => 'bol', 'BolSC66t61252H' => 'bol', 'BraA04t16352Z' => 'bra', 'BraA05t19881Z' => 'bra', 'BraA07t29824Z' => 'bra', 'BraA09t40072Z' => 'bra', 'BraA09t40074Z' => 'bra', 'C03p23700' => 'bna', 'C04p11520' => 'bna', 'C04p39940' => 'bna', 'C06p20920' => 'bna', 'C08p28340' => 'bna', 'CAN.G512.6' => 'can', 'CAN.G541.19' => 'can', 'CAN.G738.9' => 'can', 'CAN.G824.51' => 'can', 'CANSAT80G0414' => 'cansat', 'CANSAT80G0745' => 'cansat', 'CANSAT80G1466' => 'cansat', 'CARHR130900' => 'chi', 'CARHR162910' => 'chi', 'Carub.0004s1844' => 'cru', 'Carub.0005s1952' => 'cru', 'Ca_08951_v3' => 'car', 'Ca_11607_v3' => 'car', 'Ca_12337_v3' => 'car', 'CBR_g26170' => 'cbr', 'CBR_g49765' => 'cbr', 'Cc00_g08920' => 'ccan', 'Cc02_g03280' => 'ccan', 'Cc06_g04980' => 'ccan', 'Cc08_g14140' => 'ccan', 'CDE02G2509' => 'cde', 'CDE07G0580' => 'cde', 'CDE11G0001' => 'cde', 'Cfa006190' => 'cfa', 'Ciclev10022601m.g' => 'ccl', 'Ciclev10023969m.g' => 'ccl', 'CiPaw.10G003400' => 'cil', 'CiPaw.11G139900' => 'cil', 'CiPaw.12G097300' => 'cil', 'CiPaw.13G034900' => 'cil', 'ClCG04G009670' => 'cla', 'ClCG10G019550' => 'cla', 'COL.COLO4_14277' => 'col', 'COL.COLO4_22283' => 'col', 'Cpa.g.sc30.44' => 'cpa', 'Cpa.g.sc5.107' => 'cpa', 'Cpa.g.sc841.1' => 'cpa', 'Cre09.g391097' => 'cre', 'CsaV3_3G036650' => 'csa', 'CsaV3_6G040310' => 'csa', 'CSS0000130' => 'camsi', 'CSS0039458' => 'camsi', 'DCAR_017637' => 'dca', 'DCAR_020232' => 'dca', 'DCAR_020788' => 'dca', 'Dinv28467' => 'din', 'Dinv35191' => 'din', 'Dinv35851' => 'din', 'Dinv37377' => 'din', 'Duzib084G1285' => 'dzi', 'Duzib093G1442' => 'dzi', 'Duzib106G0312' => 'dzi', 'Duzib128G0195' => 'dzi', 'Duzib128G1774' => 'dzi', 'Duzib205G0307' => 'dzi', 'ECA232G1017' => 'eca', 'ECA233G0026' => 'eca', 'ECA238G1894' => 'eca', 'EL10Ac3g05671' => 'bvu', 'FAN01G3096' => 'fan', 'FAN02G1334' => 'fan', 'FAN03G1501' => 'fan', 'FAN03G2853' => 'fan', 'FAN04G1390' => 'fan', 'FAN05G3094' => 'fan', 'FAN05G4674' => 'fan', 'FAN06G2543' => 'fan', 'FAN06G4519' => 'fan', 'FAN08G0781' => 'fan', 'FAN09G0531' => 'fan', 'FAN09G4589' => 'fan', 'FAN10G2695' => 'fan', 'FAN11G1166' => 'fan', 'FAN13G3063' => 'fan', 'FAN14G4889' => 'fan', 'FAN17G1890' => 'fan', 'FAN18G0594' => 'fan', 'FvH4_2g09804' => 'fve', 'FvH4_5g01720' => 'fve', 'FvH4_6g17440' => 'fve', 'FvH4_6g28801' => 'fve', 'FvH4_7g29120' => 'fve', 'Glyma.03G189300' => 'gma', 'Glyma.10G066500' => 'gma', 'Glyma.13G151600' => 'gma', 'Glyma.19G189600' => 'gma', 'Gohir.A01G210920' => 'ghi', 'Gohir.A09G142700' => 'ghi', 'Gohir.A09G180100' => 'ghi', 'Gohir.A11G322500' => 'ghi', 'Gohir.D01G199701' => 'ghi', 'Gohir.D09G138900' => 'ghi', 'Gohir.D11G341600' => 'ghi', 'Gorai.002G244300' => 'gra', 'Gorai.006G159400' => 'gra', 'Gorai.007G371600' => 'gra', 'GSVIVG01010601001' => 'vvi', 'GSVIVG01033743001' => 'vvi', 'GSVIVG01034676001' => 'vvi', 'HanXRQChr01g0004831' => 'han', 'HanXRQChr09g0253781' => 'han', 'HanXRQChr10g0281991' => 'han', 'HanXRQChr10g0282021' => 'han', 'HanXRQChr13g0393681' => 'han', 'HanXRQChr15g0495621' => 'han', 'Haze_19509' => 'cav', 'Haze_27009' => 'cav', 'Hma1.2p1_0084F.1_g042980' => 'hma', 'HPP92_017898' => 'vpl', 'HPP92_017901' => 'vpl', 'HPP92_019028' => 'vpl', 'Hund04729' => 'sun', 'Hund11761' => 'sun', 'Hund28787' => 'sun', 'Lalb_Chr01g0018451' => 'lal', 'Lalb_Chr04g0261331' => 'lal', 'Lalb_Chr04g0261341' => 'lal', 'Lalb_Chr15g0076461' => 'lal', 'Lalb_Chr20g0112301' => 'lal', 'Lalb_Chr25g0288741' => 'lal', 'Lj1A994T59' => 'lonja', 'Lj2A193T57' => 'lonja', 'Lj2C26T1' => 'lonja', 'Lj2g0024206' => 'lja', 'Lj4g0018292' => 'lja', 'Lj8A26G45' => 'lonja', 'Lsat_1_v5_gn_2_131641' => 'lsa', 'Lsat_1_v5_gn_8_7001' => 'lsa', 'Lsat_1_v5_gn_9_54240' => 'lsa', 'Manes.01G065600' => 'mes', 'Manes.02G026400' => 'mes', 'Manes.02G169200' => 'mes', 'Manes.06G145400' => 'mes', 'Mapoly0055s0009' => 'mpo', 'Mapoly0084s0003' => 'mpo', 'MBI04_g42403_MAGBIO' => 'mbi', 'MBI12_g15166_MAGBIO' => 'mbi', 'MBI13_g02428_MAGBIO' => 'mbi', 'MBI13_g42057_MAGBIO' => 'mbi', 'MCO13G546' => 'mco', 'MD00G1145600' => 'mdo', 'MD04G1065300' => 'mdo', 'MD07G1266300' => 'mdo', 'MD12G1100700' => 'mdo', 'MD14G1094900' => 'mdo', 'Medtr1g061670' => 'mtr', 'Medtr4g104930' => 'mtr', 'Medtr7g103320' => 'mtr', 'MELO3C009419.2' => 'cme', 'MELO3C024506.2' => 'cme', 'Migut.I00133' => 'egut', 'Migut.O00209' => 'egut', 'MSTRG.12009' => 'ama', 'MSTRG.13827' => 'ama', 'MSTRG.25581' => 'ama', 'Nitab4.5_0000132g0300' => 'nta', 'Nitab4.5_0000381g0400' => 'nta', 'Nitab4.5_0000680g0080' => 'nta', 'Nitab4.5_0006314g0020' => 'nta', 'Nitab4.5_0009127g0050' => 'nta', 'Nitab4.5_0009405g0030' => 'nta', 'Nitab4.5_0016013g0010' => 'nta', 'Nn1g01389' => 'nnu', 'Nn2g15908' => 'nnu', 'Nn6g34218' => 'nnu', 'Oeu011672.1' => 'oeu', 'Oeu028569.1' => 'oeu', 'Oeu037533.1' => 'oeu', 'Os05g0486700' => 'osa', 'Os07g0224000' => 'osa', 'Peaxi162Scf00110g00117' => 'pax', 'Peaxi162Scf00146g00514' => 'pax', 'Peaxi162Scf00638g00013' => 'pax', 'Peaxi162Scf02095g00010' => 'pax', 'PGR004G2557' => 'pgr', 'PGR031G0006' => 'pgr', 'PGR142G0677' => 'pgr', 'PGSC0003DMG400002729' => 'stu', 'PGSC0003DMG400011041' => 'stu', 'PGSC0003DMG400028271' => 'stu', 'Phvul.001G184700' => 'pvu', 'Phvul.007G224900' => 'pvu', 'Potri.003G123101' => 'ptr', 'Potri.004G085300' => 'ptr', 'Potri.012G139400' => 'ptr', 'Potri.012G139500' => 'ptr', 'Potri.015G141900' => 'ptr', 'Pp3c13_10770' => 'ppa', 'Pp3c1_16170' => 'ppa', 'Pp3c1_18930' => 'ppa', 'Pp3c27_6690' => 'ppa', 'Pp3c3_10840' => 'ppa', 'Pp3c3_8930' => 'ppa', 'Pp3c4_25160' => 'ppa', 'Pp3c4_25170' => 'ppa', 'PRCOL_00002004' => 'pco', 'Prupe.5G092800' => 'ppe', 'Prupe.7G121200' => 'ppe', 'Psat0ss1870g0040' => 'psa', 'Psat3g036920' => 'psa', 'Psat7g218680' => 'psa', 'PSO363G0001' => 'pso', 'PSO478G0162' => 'pso', 'PSO478G2206' => 'pso', 'PSO478G2364' => 'pso', 'PSO541G3256' => 'pso', 'PSO675G8248' => 'pso', 'QL04p040470' => 'qlo', 'QL07p041002' => 'qlo', 'QL07p041053' => 'qlo', 'QL12p017536' => 'qlo', 'RcHm_v2.0_Chr1g0313771' => 'rch', 'RcHm_v2.0_Chr1g0376871' => 'rch', 'RcHm_v2.0_Chr3g0471681' => 'rch', 'RcHm_v2.0_Chr7g0199011' => 'rch', 'Rhsim03G0084600' => 'rsi', 'Rhsim03G0178400' => 'rsi', 'Rhsim09G0197100' => 'rsi', 'Sabra03G0086800' => 'sbr', 'Sabra04G0056400' => 'sbr', 'Sabra12G0104600' => 'sbr', 'Sabra15G0152100' => 'sbr', 'SalBow1G7093' => 'sbo', 'SalBow1G7591' => 'sbo', 'Sc06g0002170' => 'sci', 'Sc09g0005640' => 'sci', 'Sc20g0001390' => 'sci', 'Sed0007956' => 'sed', 'Sed0014681' => 'sed', 'Sed0017178' => 'sed', 'Sed0025234' => 'sed', 'SEGI_03680' => 'sgi', 'SGA_v2.0_scaffold144G35968' => 'sas', 'SGA_v2.0_scaffold286G47082' => 'sas', 'SGA_v2.0_scaffold343G49462' => 'sas', 'SMO271G0053' => 'smo', 'SMO356G0568' => 'smo', 'Solyc09g008800.3' => 'sly', 'Solyc10g083740.3' => 'sly', 'Solyc10g085480.2' => 'sly', 'Sopen09g003590' => 'spe', 'Sopen10g034910' => 'spe', 'Sp4g18900' => 'spa', 'Sp5g09300' => 'spa', 'TAR374G1344' => 'tar', 'TAR623G0411' => 'tar', 'TAR633G0321' => 'tar', 'TAR636G2023' => 'tar', 'THA.LOC104805122' => 'tha', 'THA.LOC104823474' => 'tha', 'THA.LOC104826938' => 'tha', 'THA.LOC104827494' => 'tha', 'Thecc.03G172400' => 'tca', 'Thecc.05G078000' => 'tca', 'Thecc.10G094200' => 'tca', 'Thecc.10G126900' => 'tca', 'Thhalv10010779m.g' => 'esa', 'Thhalv10017341m.g' => 'esa', 'TPR.G26171' => 'tpr', 'TPR.G31506' => 'tpr', 'TPR.G5696' => 'tpr', 'TWI39G1062' => 'twi', 'TWI53G1091' => 'twi', 'TWI74G0046' => 'twi', 'TWI77G0861' => 'twi', 'unitig_26.g9137' => 'ugi', 'unitig_26.g9149' => 'ugi', 'unitig_749.g14207' => 'ugi', 'vmacro06708' => 'vma', 'vmacro07344' => 'vma', 'vmacro09849' => 'vma', 'VMungo0720G0249' => 'vmu', 'VMungo1383G2318' => 'vmu', 'Zm00001eb049720' => 'zma', 'Zm00001eb219320' => 'zma', 'Zm00001eb352180' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001933' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001933' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001933' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001933' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '342', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p06490' => 'bna', 'A05p09250' => 'bna', 'A07p21370' => 'bna', 'A09p46080' => 'bna', 'A09p46100' => 'bna', 'Aa31LG10G7870' => 'aar', 'Aa31LG10G8230' => 'aar', 'Aa31LG2G18320' => 'aar', 'Aa31LG5G21820' => 'aar', 'Aa31sc438G10' => 'aar', 'Aa31sc528G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5175' => 'aag', 'Actinidia02033' => 'ach', 'Actinidia11317' => 'ach', 'Actinidia31812' => 'ach', 'Actinidia32881' => 'ach', 'Actinidia39865' => 'ach', 'Ah.13g068500' => 'amhyb', 'AL4G32800' => 'aly', 'AL5G33850' => 'aly', 'Aqoxy2G03338' => 'aox', 'Aqoxy2G03339' => 'aox', 'Aqoxy7G00409' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8FR7LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBE829' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDJ5Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2FUU3' => 'arhy', 'AT2G36620' => 'ath', 'AT3G53020' => 'ath', 'ATR0068G053' => 'atr', 'ATR0757G205' => 'atr', 'Atru.chr10.589' => 'acertr', 'Atru.chr6.654' => 'acertr', 'Atru.chr6.656' => 'acertr', 'AUR62010637' => 'cqu', 'AUR62016002' => 'cqu', 'AUR62017280' => 'cqu', 'AUR62021210' => 'cqu', 'AUR62041043' => 'cqu', 'BcaB01g00316' => 'bca', 'BcaB01g03822' => 'bca', 'BcaB02g08543' => 'bca', 'BcaB02g09345' => 'bca', 'BcaC01g05645' => 'bca', 'BcaC02g09196' => 'bca', 'BcaC02g11775' => 'bca', 'BcaC07g39666' => 'bca', 'BcaC08g44620' => 'bca', 'BolC3t14765H' => 'bol', 'BolC4t22802H' => 'bol', 'BolC4t25566H' => 'bol', 'BolC6t37280H' => 'bol', 'BolC8t50442H' => 'bol', 'BolC8t50444H' => 'bol', 'BolSC66t61252H' => 'bol', 'BraA04t16352Z' => 'bra', 'BraA05t19881Z' => 'bra', 'BraA07t29824Z' => 'bra', 'BraA09t40072Z' => 'bra', 'BraA09t40074Z' => 'bra', 'C03p23700' => 'bna', 'C04p11520' => 'bna', 'C04p39940' => 'bna', 'C06p20920' => 'bna', 'C08p28340' => 'bna', 'CAN.G512.6' => 'can', 'CAN.G541.19' => 'can', 'CAN.G738.9' => 'can', 'CAN.G824.51' => 'can', 'CANSAT80G0414' => 'cansat', 'CANSAT80G0745' => 'cansat', 'CANSAT80G1466' => 'cansat', 'CARHR130900' => 'chi', 'CARHR162910' => 'chi', 'Carub.0004s1844' => 'cru', 'Carub.0005s1952' => 'cru', 'Ca_08951_v3' => 'car', 'Ca_11607_v3' => 'car', 'Ca_12337_v3' => 'car', 'CBR_g26170' => 'cbr', 'CBR_g49765' => 'cbr', 'Cc00_g08920' => 'ccan', 'Cc02_g03280' => 'ccan', 'Cc06_g04980' => 'ccan', 'Cc08_g14140' => 'ccan', 'CDE02G2509' => 'cde', 'CDE07G0580' => 'cde', 'CDE11G0001' => 'cde', 'Cfa006190' => 'cfa', 'Ciclev10022601m.g' => 'ccl', 'Ciclev10023969m.g' => 'ccl', 'CiPaw.10G003400' => 'cil', 'CiPaw.11G139900' => 'cil', 'CiPaw.12G097300' => 'cil', 'CiPaw.13G034900' => 'cil', 'ClCG04G009670' => 'cla', 'ClCG10G019550' => 'cla', 'COL.COLO4_14277' => 'col', 'COL.COLO4_22283' => 'col', 'Cpa.g.sc30.44' => 'cpa', 'Cpa.g.sc5.107' => 'cpa', 'Cpa.g.sc841.1' => 'cpa', 'Cre09.g391097' => 'cre', 'CsaV3_3G036650' => 'csa', 'CsaV3_6G040310' => 'csa', 'CSS0000130' => 'camsi', 'CSS0039458' => 'camsi', 'DCAR_017637' => 'dca', 'DCAR_020232' => 'dca', 'DCAR_020788' => 'dca', 'Dinv28467' => 'din', 'Dinv35191' => 'din', 'Dinv35851' => 'din', 'Dinv37377' => 'din', 'Duzib084G1285' => 'dzi', 'Duzib093G1442' => 'dzi', 'Duzib106G0312' => 'dzi', 'Duzib128G0195' => 'dzi', 'Duzib128G1774' => 'dzi', 'Duzib205G0307' => 'dzi', 'ECA232G1017' => 'eca', 'ECA233G0026' => 'eca', 'ECA238G1894' => 'eca', 'EL10Ac3g05671' => 'bvu', 'FAN01G3096' => 'fan', 'FAN02G1334' => 'fan', 'FAN03G1501' => 'fan', 'FAN03G2853' => 'fan', 'FAN04G1390' => 'fan', 'FAN05G3094' => 'fan', 'FAN05G4674' => 'fan', 'FAN06G2543' => 'fan', 'FAN06G4519' => 'fan', 'FAN08G0781' => 'fan', 'FAN09G0531' => 'fan', 'FAN09G4589' => 'fan', 'FAN10G2695' => 'fan', 'FAN11G1166' => 'fan', 'FAN13G3063' => 'fan', 'FAN14G4889' => 'fan', 'FAN17G1890' => 'fan', 'FAN18G0594' => 'fan', 'FvH4_2g09804' => 'fve', 'FvH4_5g01720' => 'fve', 'FvH4_6g17440' => 'fve', 'FvH4_6g28801' => 'fve', 'FvH4_7g29120' => 'fve', 'Glyma.03G189300' => 'gma', 'Glyma.10G066500' => 'gma', 'Glyma.13G151600' => 'gma', 'Glyma.19G189600' => 'gma', 'Gohir.A01G210920' => 'ghi', 'Gohir.A09G142700' => 'ghi', 'Gohir.A09G180100' => 'ghi', 'Gohir.A11G322500' => 'ghi', 'Gohir.D01G199701' => 'ghi', 'Gohir.D09G138900' => 'ghi', 'Gohir.D11G341600' => 'ghi', 'Gorai.002G244300' => 'gra', 'Gorai.006G159400' => 'gra', 'Gorai.007G371600' => 'gra', 'GSVIVG01010601001' => 'vvi', 'GSVIVG01033743001' => 'vvi', 'GSVIVG01034676001' => 'vvi', 'HanXRQChr01g0004831' => 'han', 'HanXRQChr09g0253781' => 'han', 'HanXRQChr10g0281991' => 'han', 'HanXRQChr10g0282021' => 'han', 'HanXRQChr13g0393681' => 'han', 'HanXRQChr15g0495621' => 'han', 'Haze_19509' => 'cav', 'Haze_27009' => 'cav', 'Hma1.2p1_0084F.1_g042980' => 'hma', 'HPP92_017898' => 'vpl', 'HPP92_017901' => 'vpl', 'HPP92_019028' => 'vpl', 'Hund04729' => 'sun', 'Hund11761' => 'sun', 'Hund28787' => 'sun', 'Lalb_Chr01g0018451' => 'lal', 'Lalb_Chr04g0261331' => 'lal', 'Lalb_Chr04g0261341' => 'lal', 'Lalb_Chr15g0076461' => 'lal', 'Lalb_Chr20g0112301' => 'lal', 'Lalb_Chr25g0288741' => 'lal', 'Lj1A994T59' => 'lonja', 'Lj2A193T57' => 'lonja', 'Lj2C26T1' => 'lonja', 'Lj2g0024206' => 'lja', 'Lj4g0018292' => 'lja', 'Lj8A26G45' => 'lonja', 'Lsat_1_v5_gn_2_131641' => 'lsa', 'Lsat_1_v5_gn_8_7001' => 'lsa', 'Lsat_1_v5_gn_9_54240' => 'lsa', 'Manes.01G065600' => 'mes', 'Manes.02G026400' => 'mes', 'Manes.02G169200' => 'mes', 'Manes.06G145400' => 'mes', 'Mapoly0055s0009' => 'mpo', 'Mapoly0084s0003' => 'mpo', 'MBI04_g42403_MAGBIO' => 'mbi', 'MBI12_g15166_MAGBIO' => 'mbi', 'MBI13_g02428_MAGBIO' => 'mbi', 'MBI13_g42057_MAGBIO' => 'mbi', 'MCO13G546' => 'mco', 'MD00G1145600' => 'mdo', 'MD04G1065300' => 'mdo', 'MD07G1266300' => 'mdo', 'MD12G1100700' => 'mdo', 'MD14G1094900' => 'mdo', 'Medtr1g061670' => 'mtr', 'Medtr4g104930' => 'mtr', 'Medtr7g103320' => 'mtr', 'MELO3C009419.2' => 'cme', 'MELO3C024506.2' => 'cme', 'Migut.I00133' => 'egut', 'Migut.O00209' => 'egut', 'MSTRG.12009' => 'ama', 'MSTRG.13827' => 'ama', 'MSTRG.25581' => 'ama', 'Nitab4.5_0000132g0300' => 'nta', 'Nitab4.5_0000381g0400' => 'nta', 'Nitab4.5_0000680g0080' => 'nta', 'Nitab4.5_0006314g0020' => 'nta', 'Nitab4.5_0009127g0050' => 'nta', 'Nitab4.5_0009405g0030' => 'nta', 'Nitab4.5_0016013g0010' => 'nta', 'Nn1g01389' => 'nnu', 'Nn2g15908' => 'nnu', 'Nn6g34218' => 'nnu', 'Oeu011672.1' => 'oeu', 'Oeu028569.1' => 'oeu', 'Oeu037533.1' => 'oeu', 'Os05g0486700' => 'osa', 'Os07g0224000' => 'osa', 'Peaxi162Scf00110g00117' => 'pax', 'Peaxi162Scf00146g00514' => 'pax', 'Peaxi162Scf00638g00013' => 'pax', 'Peaxi162Scf02095g00010' => 'pax', 'PGR004G2557' => 'pgr', 'PGR031G0006' => 'pgr', 'PGR142G0677' => 'pgr', 'PGSC0003DMG400002729' => 'stu', 'PGSC0003DMG400011041' => 'stu', 'PGSC0003DMG400028271' => 'stu', 'Phvul.001G184700' => 'pvu', 'Phvul.007G224900' => 'pvu', 'Potri.003G123101' => 'ptr', 'Potri.004G085300' => 'ptr', 'Potri.012G139400' => 'ptr', 'Potri.012G139500' => 'ptr', 'Potri.015G141900' => 'ptr', 'Pp3c13_10770' => 'ppa', 'Pp3c1_16170' => 'ppa', 'Pp3c1_18930' => 'ppa', 'Pp3c27_6690' => 'ppa', 'Pp3c3_10840' => 'ppa', 'Pp3c3_8930' => 'ppa', 'Pp3c4_25160' => 'ppa', 'Pp3c4_25170' => 'ppa', 'PRCOL_00002004' => 'pco', 'Prupe.5G092800' => 'ppe', 'Prupe.7G121200' => 'ppe', 'Psat0ss1870g0040' => 'psa', 'Psat3g036920' => 'psa', 'Psat7g218680' => 'psa', 'PSO363G0001' => 'pso', 'PSO478G0162' => 'pso', 'PSO478G2206' => 'pso', 'PSO478G2364' => 'pso', 'PSO541G3256' => 'pso', 'PSO675G8248' => 'pso', 'QL04p040470' => 'qlo', 'QL07p041002' => 'qlo', 'QL07p041053' => 'qlo', 'QL12p017536' => 'qlo', 'RcHm_v2.0_Chr1g0313771' => 'rch', 'RcHm_v2.0_Chr1g0376871' => 'rch', 'RcHm_v2.0_Chr3g0471681' => 'rch', 'RcHm_v2.0_Chr7g0199011' => 'rch', 'Rhsim03G0084600' => 'rsi', 'Rhsim03G0178400' => 'rsi', 'Rhsim09G0197100' => 'rsi', 'Sabra03G0086800' => 'sbr', 'Sabra04G0056400' => 'sbr', 'Sabra12G0104600' => 'sbr', 'Sabra15G0152100' => 'sbr', 'SalBow1G7093' => 'sbo', 'SalBow1G7591' => 'sbo', 'Sc06g0002170' => 'sci', 'Sc09g0005640' => 'sci', 'Sc20g0001390' => 'sci', 'Sed0007956' => 'sed', 'Sed0014681' => 'sed', 'Sed0017178' => 'sed', 'Sed0025234' => 'sed', 'SEGI_03680' => 'sgi', 'SGA_v2.0_scaffold144G35968' => 'sas', 'SGA_v2.0_scaffold286G47082' => 'sas', 'SGA_v2.0_scaffold343G49462' => 'sas', 'SMO271G0053' => 'smo', 'SMO356G0568' => 'smo', 'Solyc09g008800.3' => 'sly', 'Solyc10g083740.3' => 'sly', 'Solyc10g085480.2' => 'sly', 'Sopen09g003590' => 'spe', 'Sopen10g034910' => 'spe', 'Sp4g18900' => 'spa', 'Sp5g09300' => 'spa', 'TAR374G1344' => 'tar', 'TAR623G0411' => 'tar', 'TAR633G0321' => 'tar', 'TAR636G2023' => 'tar', 'THA.LOC104805122' => 'tha', 'THA.LOC104823474' => 'tha', 'THA.LOC104826938' => 'tha', 'THA.LOC104827494' => 'tha', 'Thecc.03G172400' => 'tca', 'Thecc.05G078000' => 'tca', 'Thecc.10G094200' => 'tca', 'Thecc.10G126900' => 'tca', 'Thhalv10010779m.g' => 'esa', 'Thhalv10017341m.g' => 'esa', 'TPR.G26171' => 'tpr', 'TPR.G31506' => 'tpr', 'TPR.G5696' => 'tpr', 'TWI39G1062' => 'twi', 'TWI53G1091' => 'twi', 'TWI74G0046' => 'twi', 'TWI77G0861' => 'twi', 'unitig_26.g9137' => 'ugi', 'unitig_26.g9149' => 'ugi', 'unitig_749.g14207' => 'ugi', 'vmacro06708' => 'vma', 'vmacro07344' => 'vma', 'vmacro09849' => 'vma', 'VMungo0720G0249' => 'vmu', 'VMungo1383G2318' => 'vmu', 'Zm00001eb049720' => 'zma', 'Zm00001eb219320' => 'zma', 'Zm00001eb352180' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001933', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001933' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '342', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001933' ) ), 'genes' => array( 'A04p06490' => 'bna', 'A05p09250' => 'bna', 'A07p21370' => 'bna', 'A09p46080' => 'bna', 'A09p46100' => 'bna', 'Aa31LG10G7870' => 'aar', 'Aa31LG10G8230' => 'aar', 'Aa31LG2G18320' => 'aar', 'Aa31LG5G21820' => 'aar', 'Aa31sc438G10' => 'aar', 'Aa31sc528G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3281' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5175' => 'aag', 'Actinidia02033' => 'ach', 'Actinidia11317' => 'ach', 'Actinidia31812' => 'ach', 'Actinidia32881' => 'ach', 'Actinidia39865' => 'ach', 'Ah.13g068500' => 'amhyb', 'AL4G32800' => 'aly', 'AL5G33850' => 'aly', 'Aqoxy2G03338' => 'aox', 'Aqoxy2G03339' => 'aox', 'Aqoxy7G00409' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8FR7LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JBE829' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDJ5Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2FUU3' => 'arhy', 'AT2G36620' => 'ath', 'AT3G53020' => 'ath', 'ATR0068G053' => 'atr', 'ATR0757G205' => 'atr', 'Atru.chr10.589' => 'acertr', 'Atru.chr6.654' => 'acertr', 'Atru.chr6.656' => 'acertr', 'AUR62010637' => 'cqu', 'AUR62016002' => 'cqu', 'AUR62017280' => 'cqu', 'AUR62021210' => 'cqu', 'AUR62041043' => 'cqu', 'BcaB01g00316' => 'bca', 'BcaB01g03822' => 'bca', 'BcaB02g08543' => 'bca', 'BcaB02g09345' => 'bca', 'BcaC01g05645' => 'bca', 'BcaC02g09196' => 'bca', 'BcaC02g11775' => 'bca', 'BcaC07g39666' => 'bca', 'BcaC08g44620' => 'bca', 'BolC3t14765H' => 'bol', 'BolC4t22802H' => 'bol', 'BolC4t25566H' => 'bol', 'BolC6t37280H' => 'bol', 'BolC8t50442H' => 'bol', 'BolC8t50444H' => 'bol', 'BolSC66t61252H' => 'bol', 'BraA04t16352Z' => 'bra', 'BraA05t19881Z' => 'bra', 'BraA07t29824Z' => 'bra', 'BraA09t40072Z' => 'bra', 'BraA09t40074Z' => 'bra', 'C03p23700' => 'bna', 'C04p11520' => 'bna', 'C04p39940' => 'bna', 'C06p20920' => 'bna', 'C08p28340' => 'bna', 'CAN.G512.6' => 'can', 'CAN.G541.19' => 'can', 'CAN.G738.9' => 'can', 'CAN.G824.51' => 'can', 'CANSAT80G0414' => 'cansat', 'CANSAT80G0745' => 'cansat', 'CANSAT80G1466' => 'cansat', 'CARHR130900' => 'chi', 'CARHR162910' => 'chi', 'Carub.0004s1844' => 'cru', 'Carub.0005s1952' => 'cru', 'Ca_08951_v3' => 'car', 'Ca_11607_v3' => 'car', 'Ca_12337_v3' => 'car', 'CBR_g26170' => 'cbr', 'CBR_g49765' => 'cbr', 'Cc00_g08920' => 'ccan', 'Cc02_g03280' => 'ccan', 'Cc06_g04980' => 'ccan', 'Cc08_g14140' => 'ccan', 'CDE02G2509' => 'cde', 'CDE07G0580' => 'cde', 'CDE11G0001' => 'cde', 'Cfa006190' => 'cfa', 'Ciclev10022601m.g' => 'ccl', 'Ciclev10023969m.g' => 'ccl', 'CiPaw.10G003400' => 'cil', 'CiPaw.11G139900' => 'cil', 'CiPaw.12G097300' => 'cil', 'CiPaw.13G034900' => 'cil', 'ClCG04G009670' => 'cla', 'ClCG10G019550' => 'cla', 'COL.COLO4_14277' => 'col', 'COL.COLO4_22283' => 'col', 'Cpa.g.sc30.44' => 'cpa', 'Cpa.g.sc5.107' => 'cpa', 'Cpa.g.sc841.1' => 'cpa', 'Cre09.g391097' => 'cre', 'CsaV3_3G036650' => 'csa', 'CsaV3_6G040310' => 'csa', 'CSS0000130' => 'camsi', 'CSS0039458' => 'camsi', 'DCAR_017637' => 'dca', 'DCAR_020232' => 'dca', 'DCAR_020788' => 'dca', 'Dinv28467' => 'din', 'Dinv35191' => 'din', 'Dinv35851' => 'din', 'Dinv37377' => 'din', 'Duzib084G1285' => 'dzi', 'Duzib093G1442' => 'dzi', 'Duzib106G0312' => 'dzi', 'Duzib128G0195' => 'dzi', 'Duzib128G1774' => 'dzi', 'Duzib205G0307' => 'dzi', 'ECA232G1017' => 'eca', 'ECA233G0026' => 'eca', 'ECA238G1894' => 'eca', 'EL10Ac3g05671' => 'bvu', 'FAN01G3096' => 'fan', 'FAN02G1334' => 'fan', 'FAN03G1501' => 'fan', 'FAN03G2853' => 'fan', 'FAN04G1390' => 'fan', 'FAN05G3094' => 'fan', 'FAN05G4674' => 'fan', 'FAN06G2543' => 'fan', 'FAN06G4519' => 'fan', 'FAN08G0781' => 'fan', 'FAN09G0531' => 'fan', 'FAN09G4589' => 'fan', 'FAN10G2695' => 'fan', 'FAN11G1166' => 'fan', 'FAN13G3063' => 'fan', 'FAN14G4889' => 'fan', 'FAN17G1890' => 'fan', 'FAN18G0594' => 'fan', 'FvH4_2g09804' => 'fve', 'FvH4_5g01720' => 'fve', 'FvH4_6g17440' => 'fve', 'FvH4_6g28801' => 'fve', 'FvH4_7g29120' => 'fve', 'Glyma.03G189300' => 'gma', 'Glyma.10G066500' => 'gma', 'Glyma.13G151600' => 'gma', 'Glyma.19G189600' => 'gma', 'Gohir.A01G210920' => 'ghi', 'Gohir.A09G142700' => 'ghi', 'Gohir.A09G180100' => 'ghi', 'Gohir.A11G322500' => 'ghi', 'Gohir.D01G199701' => 'ghi', 'Gohir.D09G138900' => 'ghi', 'Gohir.D11G341600' => 'ghi', 'Gorai.002G244300' => 'gra', 'Gorai.006G159400' => 'gra', 'Gorai.007G371600' => 'gra', 'GSVIVG01010601001' => 'vvi', 'GSVIVG01033743001' => 'vvi', 'GSVIVG01034676001' => 'vvi', 'HanXRQChr01g0004831' => 'han', 'HanXRQChr09g0253781' => 'han', 'HanXRQChr10g0281991' => 'han', 'HanXRQChr10g0282021' => 'han', 'HanXRQChr13g0393681' => 'han', 'HanXRQChr15g0495621' => 'han', 'Haze_19509' => 'cav', 'Haze_27009' => 'cav', 'Hma1.2p1_0084F.1_g042980' => 'hma', 'HPP92_017898' => 'vpl', 'HPP92_017901' => 'vpl', 'HPP92_019028' => 'vpl', 'Hund04729' => 'sun', 'Hund11761' => 'sun', 'Hund28787' => 'sun', 'Lalb_Chr01g0018451' => 'lal', 'Lalb_Chr04g0261331' => 'lal', 'Lalb_Chr04g0261341' => 'lal', 'Lalb_Chr15g0076461' => 'lal', 'Lalb_Chr20g0112301' => 'lal', 'Lalb_Chr25g0288741' => 'lal', 'Lj1A994T59' => 'lonja', 'Lj2A193T57' => 'lonja', 'Lj2C26T1' => 'lonja', 'Lj2g0024206' => 'lja', 'Lj4g0018292' => 'lja', 'Lj8A26G45' => 'lonja', 'Lsat_1_v5_gn_2_131641' => 'lsa', 'Lsat_1_v5_gn_8_7001' => 'lsa', 'Lsat_1_v5_gn_9_54240' => 'lsa', 'Manes.01G065600' => 'mes', 'Manes.02G026400' => 'mes', 'Manes.02G169200' => 'mes', 'Manes.06G145400' => 'mes', 'Mapoly0055s0009' => 'mpo', 'Mapoly0084s0003' => 'mpo', 'MBI04_g42403_MAGBIO' => 'mbi', 'MBI12_g15166_MAGBIO' => 'mbi', 'MBI13_g02428_MAGBIO' => 'mbi', 'MBI13_g42057_MAGBIO' => 'mbi', 'MCO13G546' => 'mco', 'MD00G1145600' => 'mdo', 'MD04G1065300' => 'mdo', 'MD07G1266300' => 'mdo', 'MD12G1100700' => 'mdo', 'MD14G1094900' => 'mdo', 'Medtr1g061670' => 'mtr', 'Medtr4g104930' => 'mtr', 'Medtr7g103320' => 'mtr', 'MELO3C009419.2' => 'cme', 'MELO3C024506.2' => 'cme', 'Migut.I00133' => 'egut', 'Migut.O00209' => 'egut', 'MSTRG.12009' => 'ama', 'MSTRG.13827' => 'ama', 'MSTRG.25581' => 'ama', 'Nitab4.5_0000132g0300' => 'nta', 'Nitab4.5_0000381g0400' => 'nta', 'Nitab4.5_0000680g0080' => 'nta', 'Nitab4.5_0006314g0020' => 'nta', 'Nitab4.5_0009127g0050' => 'nta', 'Nitab4.5_0009405g0030' => 'nta', 'Nitab4.5_0016013g0010' => 'nta', 'Nn1g01389' => 'nnu', 'Nn2g15908' => 'nnu', 'Nn6g34218' => 'nnu', 'Oeu011672.1' => 'oeu', 'Oeu028569.1' => 'oeu', 'Oeu037533.1' => 'oeu', 'Os05g0486700' => 'osa', 'Os07g0224000' => 'osa', 'Peaxi162Scf00110g00117' => 'pax', 'Peaxi162Scf00146g00514' => 'pax', 'Peaxi162Scf00638g00013' => 'pax', 'Peaxi162Scf02095g00010' => 'pax', 'PGR004G2557' => 'pgr', 'PGR031G0006' => 'pgr', 'PGR142G0677' => 'pgr', 'PGSC0003DMG400002729' => 'stu', 'PGSC0003DMG400011041' => 'stu', 'PGSC0003DMG400028271' => 'stu', 'Phvul.001G184700' => 'pvu', 'Phvul.007G224900' => 'pvu', 'Potri.003G123101' => 'ptr', 'Potri.004G085300' => 'ptr', 'Potri.012G139400' => 'ptr', 'Potri.012G139500' => 'ptr', 'Potri.015G141900' => 'ptr', 'Pp3c13_10770' => 'ppa', 'Pp3c1_16170' => 'ppa', 'Pp3c1_18930' => 'ppa', 'Pp3c27_6690' => 'ppa', 'Pp3c3_10840' => 'ppa', 'Pp3c3_8930' => 'ppa', 'Pp3c4_25160' => 'ppa', 'Pp3c4_25170' => 'ppa', 'PRCOL_00002004' => 'pco', 'Prupe.5G092800' => 'ppe', 'Prupe.7G121200' => 'ppe', 'Psat0ss1870g0040' => 'psa', 'Psat3g036920' => 'psa', 'Psat7g218680' => 'psa', 'PSO363G0001' => 'pso', 'PSO478G0162' => 'pso', 'PSO478G2206' => 'pso', 'PSO478G2364' => 'pso', 'PSO541G3256' => 'pso', 'PSO675G8248' => 'pso', 'QL04p040470' => 'qlo', 'QL07p041002' => 'qlo', 'QL07p041053' => 'qlo', 'QL12p017536' => 'qlo', 'RcHm_v2.0_Chr1g0313771' => 'rch', 'RcHm_v2.0_Chr1g0376871' => 'rch', 'RcHm_v2.0_Chr3g0471681' => 'rch', 'RcHm_v2.0_Chr7g0199011' => 'rch', 'Rhsim03G0084600' => 'rsi', 'Rhsim03G0178400' => 'rsi', 'Rhsim09G0197100' => 'rsi', 'Sabra03G0086800' => 'sbr', 'Sabra04G0056400' => 'sbr', 'Sabra12G0104600' => 'sbr', 'Sabra15G0152100' => 'sbr', 'SalBow1G7093' => 'sbo', 'SalBow1G7591' => 'sbo', 'Sc06g0002170' => 'sci', 'Sc09g0005640' => 'sci', 'Sc20g0001390' => 'sci', 'Sed0007956' => 'sed', 'Sed0014681' => 'sed', 'Sed0017178' => 'sed', 'Sed0025234' => 'sed', 'SEGI_03680' => 'sgi', 'SGA_v2.0_scaffold144G35968' => 'sas', 'SGA_v2.0_scaffold286G47082' => 'sas', 'SGA_v2.0_scaffold343G49462' => 'sas', 'SMO271G0053' => 'smo', 'SMO356G0568' => 'smo', 'Solyc09g008800.3' => 'sly', 'Solyc10g083740.3' => 'sly', 'Solyc10g085480.2' => 'sly', 'Sopen09g003590' => 'spe', 'Sopen10g034910' => 'spe', 'Sp4g18900' => 'spa', 'Sp5g09300' => 'spa', 'TAR374G1344' => 'tar', 'TAR623G0411' => 'tar', 'TAR633G0321' => 'tar', 'TAR636G2023' => 'tar', 'THA.LOC104805122' => 'tha', 'THA.LOC104823474' => 'tha', 'THA.LOC104826938' => 'tha', 'THA.LOC104827494' => 'tha', 'Thecc.03G172400' => 'tca', 'Thecc.05G078000' => 'tca', 'Thecc.10G094200' => 'tca', 'Thecc.10G126900' => 'tca', 'Thhalv10010779m.g' => 'esa', 'Thhalv10017341m.g' => 'esa', 'TPR.G26171' => 'tpr', 'TPR.G31506' => 'tpr', 'TPR.G5696' => 'tpr', 'TWI39G1062' => 'twi', 'TWI53G1091' => 'twi', 'TWI74G0046' => 'twi', 'TWI77G0861' => 'twi', 'unitig_26.g9137' => 'ugi', 'unitig_26.g9149' => 'ugi', 'unitig_749.g14207' => 'ugi', 'vmacro06708' => 'vma', 'vmacro07344' => 'vma', 'vmacro09849' => 'vma', 'VMungo0720G0249' => 'vmu', 'VMungo1383G2318' => 'vmu', 'Zm00001eb049720' => 'zma', 'Zm00001eb219320' => 'zma', 'Zm00001eb352180' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001933' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001933' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001933' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001933' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151