Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p26540 Brassica napus
A02p27850 Brassica napus
A03p21130 Brassica napus
A09p20400 Brassica napus
A09p28710 Brassica napus
A09p33240 Brassica napus
Aa31LG6G7700 Aethionema arabicum
Aa31LG9G11600 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1731 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2422 Anthoceros agrestis
Actinidia08710 Actinidia chinensis
Actinidia18688 Actinidia chinensis
Actinidia34282 Actinidia chinensis
Ah.07g204330 Amaranthus hybridus
Ah.13g070930 Amaranthus hybridus
AL1G47490 Arabidopsis lyrata
AL1G47500 Arabidopsis lyrata
AL6G44400 Arabidopsis lyrata
Aqoxy5G04371 Aquilegia oxysepala
Aqoxy6G03032 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3HSW9S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D9ZGX3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FU4JSI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W7JQAT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YB9VK4 Arachis hypogaea
AT1G33120 Arabidopsis thaliana
AT1G33140 Arabidopsis thaliana
AT4G10450 Arabidopsis thaliana
ATR0579G173 Amborella trichopoda
ATR0829G169 Amborella trichopoda
Atru.chr9.1823 Acer truncatum
Atru.chr9.2116 Acer truncatum
AUR62010296 Chenopodium quinoa
AUR62025125 Chenopodium quinoa
AUR62037132 Chenopodium quinoa
AUR62039092 Chenopodium quinoa
BcaB01g01475 Brassica carinata
BcaB05g23898 Brassica carinata
BcaB07g30575 Brassica carinata
BcaB07g31012 Brassica carinata
BcaC03g16391 Brassica carinata
BcaC03g16581 Brassica carinata
BcaC04g21036 Brassica carinata
BcaC04g21922 Brassica carinata
BcaC08g43901 Brassica carinata
BcaC08g44246 Brassica carinata
BolC2t10263H Brassica oleracea
BolC2t10442H Brassica oleracea
BolC6t36444H Brassica oleracea
BolC6t36853H Brassica oleracea
BolC6t39406H Brassica oleracea
BolC9t55479H Brassica oleracea
BolC9t56479H Brassica oleracea
BraA02t07657Z Brassica rapa
BraA02t07824Z Brassica rapa
BraA09t37646Z Brassica rapa
BraA09t38430Z Brassica rapa
BraA09t38869Z Brassica rapa
C02p42230 Brassica napus
C02p43980 Brassica napus
C06p12880 Brassica napus
C06p16500 Brassica napus
C06p43310 Brassica napus
C09p25760 Brassica napus
C09p36430 Brassica napus
CAN.G1597.4 Capsicum annuum
CAN.G607.1 Capsicum annuum
CAN.G65.174 Capsicum annuum
CAN.G834.9 Capsicum annuum
CANSAT01G1998 Cannabis sativa
CANSAT21G1661 Cannabis sativa
CANSAT78G0932 Cannabis sativa
CARHR032480 Cardamine hirsuta
CARHR032490 Cardamine hirsuta
CARHR256200 Cardamine hirsuta
Carub.0001s3138 Capsella rubella
Carub.0006s2484 Capsella rubella
Ca_05533_v3 Cicer arietinum L.
Ca_16794_v3 Cicer arietinum L.
CBR_g17699 Chara braunii
Cc00_g25000 Coffea canephora
Cc00_g29240 Coffea canephora
Cc00_g33610 Coffea canephora
Cc01_g09700 Coffea canephora
Cc02_g00680 Coffea canephora
Cc02_g29330 Coffea canephora
Cc02_g38500 Coffea canephora
Cc03_g14690 Coffea canephora
Cc06_g01330 Coffea canephora
Cc07_g19640 Coffea canephora
Cc08_g10180 Coffea canephora
Cc08_g10250 Coffea canephora
Cc10_g11790 Coffea canephora
CDE02G4295 Ceratophyllum demersum
CDE04G3486 Ceratophyllum demersum
CDE05G2081 Ceratophyllum demersum
CDE05G2864 Ceratophyllum demersum
CDE05G3346 Ceratophyllum demersum
Cfa011879 Carpinus fangiana
Cfa016141 Carpinus fangiana
Ciclev10009377m.g Citrus clementina
Ciclev10022372m.g Citrus clementina
Ciclev10022376m.g Citrus clementina
CiPaw.05G207500 Carya illinoinensis
CiPaw.05G207600 Carya illinoinensis
CiPaw.05G207700 Carya illinoinensis
CiPaw.11G107600 Carya illinoinensis
CiPaw.12G074000 Carya illinoinensis
ClCG01G000870 Citrullus lanatus
COL.COLO4_10857 Corchorus olitorius
Cpa.g.sc183.14 Carica papaya
Cpa.g.sc183.15 Carica papaya
Cpa.g.sc27.99 Carica papaya
Cre12.g494050 Chlamydomonas reinhardtii
CsaV3_4G009970 Cucumis sativus L.
CsaV3_5G001000 Cucumis sativus L.
CSS0000739 Camellia sinensis var. sinensis
CSS0047753 Camellia sinensis var. sinensis
DCAR_010542 Daucus carota
DCAR_014576 Daucus carota
Dinv08183 Davidia involucrata
Dinv15633 Davidia involucrata
Dinv17286 Davidia involucrata
Dinv19729 Davidia involucrata
Dinv29199 Davidia involucrata
Duzib068G1227 Durio zibethinus
Duzib084G0896 Durio zibethinus
Duzib205G1940 Durio zibethinus
ECA246G5007 Erigeron canadensis
ECA248G1872 Erigeron canadensis
EL10Ac3g05147 Beta vulgaris
Eucgr.A00971 Eucalyptus grandis
Eucgr.K00048 Eucalyptus grandis
Eucgr.K00324 Eucalyptus grandis
Eucgr.K00455 Eucalyptus grandis
Eucgr.L03240 Eucalyptus grandis
FAN01G2549 Fragaria x ananassa
FAN02G2573 Fragaria x ananassa
FAN03G2262 Fragaria x ananassa
FAN04G0354 Fragaria x ananassa
FAN04G2799 Fragaria x ananassa
FAN08G3247 Fragaria x ananassa
FAN09G0927 Fragaria x ananassa
FAN10G3817 Fragaria x ananassa
FAN10G4162 Fragaria x ananassa
FAN14G3578 Fragaria x ananassa
FAN18G3033 Fragaria x ananassa
FAN21G2728 Fragaria x ananassa
FAN25G1794 Fragaria x ananassa
FvH4_5g10230 Fragaria vesca
FvH4_7g33110 Fragaria vesca
Glyma.02G170800 Glycine max
Glyma.04G226500 Glycine max
Glyma.04G226900 Glycine max
Glyma.06G138400 Glycine max
Glyma.06G138600 Glycine max
Glyma.06G138700 Glycine max
Glyma.09G170900 Glycine max
Glyma.14G122100 Glycine max
Gohir.A02G094600 Gossypium hirsutum
Gohir.A08G107900 Gossypium hirsutum
Gohir.A11G017600 Gossypium hirsutum
Gohir.A12G243400 Gossypium hirsutum
Gohir.D03G088900 Gossypium hirsutum
Gohir.D08G120900 Gossypium hirsutum
Gohir.D11G017400 Gossypium hirsutum
Gohir.D12G244400 Gossypium hirsutum
Gorai.003G072800 Gossypium raimondii
Gorai.004G127700 Gossypium raimondii
Gorai.007G018400 Gossypium raimondii
Gorai.008G262000 Gossypium raimondii
GSVIVG01016795001 Vitis vinifera
GSVIVG01038670001 Vitis vinifera
HanXRQChr01g0030651 Helianthus annuus
HanXRQChr03g0075141 Helianthus annuus
HanXRQChr04g0106331 Helianthus annuus
HanXRQChr11g0353771 Helianthus annuus
HanXRQChr16g0511141 Helianthus annuus
Haze_00320 Corylus avellana
Haze_09225 Corylus avellana
Hma1.2p1_0115F.1_g055630 Hydrangea macrophylla
Hma1.2p1_0415F.1_g148320 Hydrangea macrophylla
HPP92_002454 Vanilla planifolia
HPP92_012977 Vanilla planifolia
Hund09731 Selenicereus undatus
Hund21076 Selenicereus undatus
Lalb_Chr04g0252511 Lupinus albus
Lalb_Chr08g0239471 Lupinus albus
Lalb_Chr11g0067511 Lupinus albus
Lalb_Chr23g0272021 Lupinus albus
Lj1A1030G30 Lonicera japonica
Lj1g0022053 Lotus japonicus
Lj2g0003597 Lotus japonicus
Lj2g0005962 Lotus japonicus
Lj3A892T32 Lonicera japonica
Lj3g0001907 Lotus japonicus
Lj3g0016060 Lotus japonicus
Lj3g0021463 Lotus japonicus
Lj3g0027927 Lotus japonicus
Lj6g0018690 Lotus japonicus
Lj6g0025029 Lotus japonicus
Lj9C290T4 Lonicera japonica
LjContig00155g0020179 Lotus japonicus
Lsat_1_v5_gn_1_43881 Lactuca sativa
Lsat_1_v5_gn_4_75560 Lactuca sativa
Lsat_1_v5_gn_6_115420 Lactuca sativa
Manes.03G086200 Manihot esculenta
Manes.03G086203 Manihot esculenta
Manes.11G113000 Manihot esculenta
Manes.15G110900 Manihot esculenta
Mapoly0020s0166 Marchantia polymorpha
MBI17_g24512_MAGBIO Magnolia biondii
MBI18_g35653_MAGBIO Magnolia biondii
MCO07G519 Micromonas commoda
MD01G1230300 Malus domestica
MD07G1302000 Malus domestica
MD16G1260300 Malus domestica
Medtr3g093110 Medicago truncatula
Medtr5g068780 Medicago truncatula
MELO3C005844.2 Cucumis melo
MELO3C024850.2 Cucumis melo
MELO3C028237.2 Cucumis melo
MELO3C029109.2 Cucumis melo
MELO3C031512.2 Cucumis melo
MELO3C032210.2 Cucumis melo
MELO3C033603.2 Cucumis melo
MELO3C035000.2 Cucumis melo
MELO3C035095.2 Cucumis melo
Migut.F00133 Erythranthe guttata
Migut.F00978 Erythranthe guttata
MSTRG.8549 Avicennia marina
Nitab4.5_0000013g0110 Nicotiana tabacum
Nitab4.5_0000302g0020 Nicotiana tabacum
Nitab4.5_0000612g0150 Nicotiana tabacum
Nitab4.5_0001961g0090 Nicotiana tabacum
Nitab4.5_0002123g0080 Nicotiana tabacum
Nitab4.5_0002356g0110 Nicotiana tabacum
Nitab4.5_0005570g0040 Nicotiana tabacum
Nn1g09091 Nelumbo nucifera
Nn3g18752 Nelumbo nucifera
Nn5g28194 Nelumbo nucifera
Oeu017362.1 Olea europaea
Oeu029330.1 Olea europaea
Oeu037983.1 Olea europaea
Oeu055414.1 Olea europaea
Oeu061041.3 Olea europaea
Os02g0103700 Oryza sativa ssp. japonica
Os09g0485900 Oryza sativa ssp. japonica
Peaxi162Scf00046g00265 Petunia axillaris
Peaxi162Scf00375g00210 Petunia axillaris
PGR042G0229 Punica granatum
PGR142G2038 Punica granatum
PGSC0003DMG400025212 Solanum tuberosum
PGSC0003DMG400026910 Solanum tuberosum
PGSC0003DMG400029266 Solanum tuberosum
Phvul.004G046700 Phaseolus vulgaris
Phvul.007G076200 Phaseolus vulgaris
Phvul.009G039400 Phaseolus vulgaris
Phvul.009G039600 Phaseolus vulgaris
Potri.001G453900 Populus trichocarpa
Potri.001G454000 Populus trichocarpa
Potri.001G454101 Populus trichocarpa
Potri.011G147700 Populus trichocarpa
Potri.011G148700 Populus trichocarpa
Pp3c10_8500 Physcomitrium patens
Pp3c14_8600 Physcomitrium patens
Pp3c16_20070 Physcomitrium patens
Pp3c27_8190 Physcomitrium patens
Pp3c2_11650 Physcomitrium patens
PRCOL_00001143 Prasinoderma coloniale
Prupe.2G321000 Prunus persica
Prupe.5G136400 Prunus persica
Psat2g061360 Pisum sativum
Psat5g070760 Pisum sativum
Psat6g142400 Pisum sativum
PSO063G4408 Papaver somniferum
PSO063G5232 Papaver somniferum
PSO170G6353 Papaver somniferum
PSO339G3631 Papaver somniferum
PSO384G1497 Papaver somniferum
PSO782G4016 Papaver somniferum
QL02p026874 Quercus lobata
QL09p006176 Quercus lobata
QL09p006265 Quercus lobata
QL93p1961_0010 Quercus lobata
RcHm_v2.0_Chr1g0334541 Rosa chinensis
RcHm_v2.0_Chr1g0334651 Rosa chinensis
RcHm_v2.0_Chr1g0383161 Rosa chinensis
RcHm_v2.0_Chr2g0169651 Rosa chinensis
RcHm_v2.0_Chr3g0462551 Rosa chinensis
RcHm_v2.0_Chr6g0303521 Rosa chinensis
RcHm_v2.0_Chr7g0187991 Rosa chinensis
RcHm_v2.0_Chr7g0199361 Rosa chinensis
Rhsim03G0217400 Rhododendron simsii
Rhsim09G0210600 Rhododendron simsii
Sabra11G0132800 Salix brachista
Sabra11G0133900 Salix brachista
Sabra16G0306400 Salix brachista
Sabra16G0307000 Salix brachista
SalBow2G3528 Salvia bowleyana
SalBow4G0342 Salvia bowleyana
SalBow4G1998 Salvia bowleyana
SalBow4G2136 Salvia bowleyana
SalBow4G2355 Salvia bowleyana
SalBow8G4065 Salvia bowleyana
Sc13g0010630 Simmondsia chinensis
Sc19g0000450 Simmondsia chinensis
Sed0011061 Sechium edule
Sed0015247 Sechium edule
Sed0024722 Sechium edule
SEGI_14436 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30516 Striga asiatica
SGA_v2.0_scaffold110G31170 Striga asiatica
SGA_v2.0_scaffold141G35577 Striga asiatica
SGA_v2.0_scaffold165G38195 Striga asiatica
SGA_v2.0_scaffold181G39674 Striga asiatica
SGA_v2.0_scaffold18G08485 Striga asiatica
SGA_v2.0_scaffold259G45833 Striga asiatica
SGA_v2.0_scaffold417G51238 Striga asiatica
SGA_v2.0_scaffold44G16864 Striga asiatica
SGA_v2.0_scaffold58G20306 Striga asiatica
SGA_v2.0_scaffold85G26577 Striga asiatica
SGA_v2.0_scaffold86G26875 Striga asiatica
SGA_v2.0_scaffold87G27187 Striga asiatica
SGA_v2.0_scaffold90G27721 Striga asiatica
SGA_v2.0_scaffold94G28395 Striga asiatica
SHI53071 Sapria himalayana
SHI53924 Sapria himalayana
SMO266G0107 Selaginella moellendorffii
Solyc06g034380.1 Solanum lycopersicum
Solyc06g073310.3 Solanum lycopersicum
Solyc08g014550.3 Solanum lycopersicum
Solyc12g017290.1 Solanum lycopersicum
Solyc12g096700.2 Solanum lycopersicum
Sopen06g029670 Solanum pennellii
Sopen08g005520 Solanum pennellii
Sopen12g032530 Solanum pennellii
Sp1g28640 Schrenkiella parvula
Sp1g28650 Schrenkiella parvula
Sp6g07010 Schrenkiella parvula
TAR376G0797 Trochodendron aralioides
TAR463G0006 Trochodendron aralioides
TAR629G0410 Trochodendron aralioides
THA.LOC104806467 Tarenaya hassleriana
THA.LOC104815490 Tarenaya hassleriana
THA.LOC109116001 Tarenaya hassleriana
Thecc.03G214600 Theobroma cacao
Thhalv10008838m.g Eutrema salsugineum
Thhalv10008851m.g Eutrema salsugineum
Thhalv10028984m.g Eutrema salsugineum
Thhalv10029481m.g Eutrema salsugineum
TPR.G35916 Trifolium pratense
TPR.G40377 Trifolium pratense
TPR.G5818 Trifolium pratense
TWI15G0518 Tripterygium wilfordii
TWI60G1240 Tripterygium wilfordii
TWI81G0778 Tripterygium wilfordii
unitig_578.g16679 Utricularia gibba
unitig_736.g22894 Utricularia gibba
unitig_85.g27207 Utricularia gibba
unitig_90.g27505 Utricularia gibba
vmacro06465 Vaccinium macrocarpon
vmacro10168 Vaccinium macrocarpon
VMungo0464G0573 Vigna mungo
VMungo1309G1439 Vigna mungo
Zm00001eb209910 Zea mays
Zm00001eb268660 Zea mays
Zm00001eb379270 Zea mays

User provided reference genes

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