Gene: AT1G33120
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G33120
- Transcript Identifier AT1G33120.1
- Gene Type Coding gene
- Location Chr1 : 12010986-12012223 : positive
Gene Family Information
- ID HOM05D001768
- #Genes/#Species 368/100
- Phylogenetic origin
- ID ORTHO05D001907
- #Genes/#Species 339/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G33120.1
- uniprot P49209
Descriptions
- Description Ribosomal protein L6 family
- Computational description Ribosomal protein L6 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33140.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009955 | ISO | PLAZA Integrative Orthology | adaxial/abaxial pattern specification | AT1G33140 |
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0006412 | IEA | InterPro | translation | |
| GO:0002181 | IBA | GOA Database | cytoplasmic translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019843 | IEA | GOA Database | rRNA binding | |
| GO:0019843 | IEA | InterPro | rRNA binding | |
| GO:0003735 | IDA IBA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0022626 | IDA | GOA Database | cytosolic ribosome | |
| GO:0022626 | HDA | Gene Ontology | cytosolic ribosome | 2 |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0022625 | IDA IBA | GOA Database | cytosolic large ribosomal subunit | |
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 3 |
| GO:0005829 | IDA RCA | GOA Database | cytosol | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0009941 | IDA | GOA Database | chloroplast envelope | |
| GO:0005886 | IDA | GOA Database | plasma membrane | |
| GO:0005730 | IDA | GOA Database | nucleolus | |
| GO:0005730 | HDA | Gene Ontology | nucleolus | 4 |
| GO:0005773 | IDA | GOA Database | vacuole | |
| GO:0005773 | HDA | Gene Ontology | vacuole | 5 |
| GO:0005774 | IDA | GOA Database | vacuolar membrane | |
| GO:0005634 | HDA | Gene Ontology | nucleus | 6 |
| GO:0005794 | RCA | Gene Ontology | Golgi apparatus | 7 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 8 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.2.1.8 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL9 |