Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02640 Brassica napus
A06p33460 Brassica napus
A06p33470 Brassica napus
A06p46510 Brassica napus
A07p02670 Brassica napus
A07p02680 Brassica napus
A09p10100 Brassica napus
A09p11640 Brassica napus
Aa31LG1G14750 Aethionema arabicum
Aa31LG6G13050 Aethionema arabicum
Aa31LG7G15280 Aethionema arabicum
Aa31LG8G15170 Aethionema arabicum
Aa31LG8G15180 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2345 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3312 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.463 Anthoceros agrestis
Actinidia14057 Actinidia chinensis
Actinidia17454 Actinidia chinensis
Actinidia22986 Actinidia chinensis
Actinidia31002 Actinidia chinensis
Ah.02g124450 Amaranthus hybridus
Ah.03g141750 Amaranthus hybridus
AL3G51060 Arabidopsis lyrata
AL3G51070 Arabidopsis lyrata
AL6G43540 Arabidopsis lyrata
AL8G13080 Arabidopsis lyrata
AL8G45270 Arabidopsis lyrata
Aqoxy5G01438 Aquilegia oxysepala
Aqoxy6G02302 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.89M253 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F451U0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IQ7S3S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QP2BKI Arachis hypogaea
AT2G17990 Arabidopsis thaliana
AT2G18000 Arabidopsis thaliana
AT4G36105 Arabidopsis thaliana
AT5G45600 Arabidopsis thaliana
AT5G66250 Arabidopsis thaliana
ATR0680G362 Amborella trichopoda
ATR0820G278 Amborella trichopoda
Atru.chr3.789 Acer truncatum
Atru.chr3.790 Acer truncatum
Atru.chr5.3180 Acer truncatum
Atru.chr5.3181 Acer truncatum
AUR62007520 Chenopodium quinoa
AUR62007522 Chenopodium quinoa
AUR62023649 Chenopodium quinoa
AUR62042798 Chenopodium quinoa
AUR62043756 Chenopodium quinoa
AUR62043757 Chenopodium quinoa
AUR62043805 Chenopodium quinoa
AUR62043806 Chenopodium quinoa
AUR62044201 Chenopodium quinoa
AUR62044202 Chenopodium quinoa
BcaB03g16587 Brassica carinata
BcaB08g34783 Brassica carinata
BcaC04g22938 Brassica carinata
BcaC06g31536 Brassica carinata
BcaC06g34420 Brassica carinata
BcaC06g36351 Brassica carinata
BcaC06g36352 Brassica carinata
BcaNung00764 Brassica carinata
BcaNung04495 Brassica carinata
BcaNung04499 Brassica carinata
BolC1t00279H Brassica oleracea
BolC3t18147H Brassica oleracea
BolC7t40898H Brassica oleracea
BolC7t40899H Brassica oleracea
BolC7t43408H Brassica oleracea
BolC9t54085H Brassica oleracea
BolC9t54258H Brassica oleracea
BraA01t00250Z Brassica rapa
BraA06t26280Z Brassica rapa
BraA06t27525Z Brassica rapa
BraA07t28063Z Brassica rapa
BraA07t28064Z Brassica rapa
BraA09t36653Z Brassica rapa
BraA09t36810Z Brassica rapa
C01p02930 Brassica napus
C03p58890 Brassica napus
C07p04970 Brassica napus
C07p04980 Brassica napus
C07p28700 Brassica napus
C09p11970 Brassica napus
C09p13680 Brassica napus
CAN.G1671.5 Capsicum annuum
CAN.G1671.6 Capsicum annuum
CAN.G416.31 Capsicum annuum
CAN.G893.6 Capsicum annuum
CANSAT01G0161 Cannabis sativa
CANSAT01G1879 Cannabis sativa
CANSAT11G2241 Cannabis sativa
CANSAT80G2154 Cannabis sativa
CARHR108480 Cardamine hirsuta
CARHR108490 Cardamine hirsuta
CARHR176430 Cardamine hirsuta
CARHR244500 Cardamine hirsuta
CARHR281460 Cardamine hirsuta
CARHR281470 Cardamine hirsuta
Carub.0003s3213 Capsella rubella
Carub.0003s3214 Capsella rubella
Carub.0007s0413 Capsella rubella
Carub.0008s0243 Capsella rubella
Carub.0008s2824 Capsella rubella
Ca_20491_v3 Cicer arietinum L.
Ca_22369_v3 Cicer arietinum L.
Ca_25827_v3 Cicer arietinum L.
CBR_g20117 Chara braunii
Cc00_g26590 Coffea canephora
Cc00_g26600 Coffea canephora
Cc02_g16780 Coffea canephora
CDE02G4489 Ceratophyllum demersum
CDE04G1263 Ceratophyllum demersum
CDE11G0992 Ceratophyllum demersum
Cfa006964 Carpinus fangiana
Ciclev10025997m.g Citrus clementina
Ciclev10026276m.g Citrus clementina
Ciclev10029039m.g Citrus clementina
CiPaw.06G126900 Carya illinoinensis
CiPaw.07G057700 Carya illinoinensis
CiPaw.08G132200 Carya illinoinensis
CiPaw.08G132300 Carya illinoinensis
ClCG01G020200 Citrullus lanatus
ClCG07G008590 Citrullus lanatus
COL.COLO4_10610 Corchorus olitorius
COL.COLO4_21923 Corchorus olitorius
COL.COLO4_21924 Corchorus olitorius
Cpa.g.sc37.228 Carica papaya
Cpa.g.sc6.237 Carica papaya
Cpa.g.sc6.238 Carica papaya
Cre01.g041583 Chlamydomonas reinhardtii
Cre06.g284050 Chlamydomonas reinhardtii
CsaV3_4G005560 Cucumis sativus L.
CsaV3_6G047010 Cucumis sativus L.
CSS0003132 Camellia sinensis var. sinensis
CSS0008566 Camellia sinensis var. sinensis
CSS0027230 Camellia sinensis var. sinensis
CSS0030027 Camellia sinensis var. sinensis
DCAR_016613 Daucus carota
DCAR_016614 Daucus carota
Dinv23441 Davidia involucrata
Dinv33620 Davidia involucrata
Dinv33621 Davidia involucrata
Dinv40080 Davidia involucrata
Dinv41985 Davidia involucrata
Duzib132G0324 Durio zibethinus
Duzib147G0876 Durio zibethinus
Duzib187G1725 Durio zibethinus
Duzib264G0112 Durio zibethinus
Duzib264G0856 Durio zibethinus
ECA233G2875 Erigeron canadensis
ECA238G4783 Erigeron canadensis
ECA246G3074 Erigeron canadensis
EL10As8g23833 Beta vulgaris
EL10As8g23838 Beta vulgaris
Eucgr.I02357 Eucalyptus grandis
Eucgr.J02426 Eucalyptus grandis
FAN15G1762 Fragaria x ananassa
FAN19G0503 Fragaria x ananassa
FAN19G2078 Fragaria x ananassa
FAN20G2755 Fragaria x ananassa
FAN23G0315 Fragaria x ananassa
FAN23G2041 Fragaria x ananassa
FAN24G2176 Fragaria x ananassa
FAN26G0519 Fragaria x ananassa
FAN26G2553 Fragaria x ananassa
FAN28G0531 Fragaria x ananassa
FAN28G1062 Fragaria x ananassa
FvH4_1g11960 Fragaria vesca
FvH4_1g11970 Fragaria vesca
FvH4_2g10790 Fragaria vesca
Glyma.01G166600 Glycine max
Glyma.01G166700 Glycine max
Glyma.02G049100 Glycine max
Glyma.09G222100 Glycine max
Glyma.11G076600 Glycine max
Glyma.11G076700 Glycine max
Glyma.12G035600 Glycine max
Glyma.16G129200 Glycine max
Gohir.A02G170000 Gossypium hirsutum
Gohir.A11G041800 Gossypium hirsutum
Gohir.A11G176200 Gossypium hirsutum
Gohir.A12G039650 Gossypium hirsutum
Gohir.A12G040300 Gossypium hirsutum
Gohir.D03G010000 Gossypium hirsutum
Gohir.D11G045100 Gossypium hirsutum
Gohir.D11G183900 Gossypium hirsutum
Gohir.D12G032000 Gossypium hirsutum
Gohir.D12G032750 Gossypium hirsutum
Gorai.003G010300 Gossypium raimondii
Gorai.007G048500 Gossypium raimondii
Gorai.007G195800 Gossypium raimondii
Gorai.008G032700 Gossypium raimondii
Gorai.008G033500 Gossypium raimondii
GSVIVG01018794001 Vitis vinifera
GSVIVG01018795001 Vitis vinifera
GSVIVG01024149001 Vitis vinifera
HanXRQChr13g0389031 Helianthus annuus
HanXRQChr14g0441321 Helianthus annuus
HanXRQChr16g0531321 Helianthus annuus
Haze_02223 Corylus avellana
Haze_03774 Corylus avellana
Haze_03775 Corylus avellana
Hma1.2p1_0032F.1_g019960 Hydrangea macrophylla
Hma1.2p1_0743F.1_g211560 Hydrangea macrophylla
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla
Hma1.2p1_2281F.1_g318800 Hydrangea macrophylla
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla
HPP92_007128 Vanilla planifolia
HPP92_025698 Vanilla planifolia
Hund14041 Selenicereus undatus
Hund16484 Selenicereus undatus
Hund19697 Selenicereus undatus
Lalb_Chr01g0002071 Lupinus albus
Lalb_Chr05g0229891 Lupinus albus
Lalb_Chr09g0321771 Lupinus albus
Lalb_Chr09g0321781 Lupinus albus
Lalb_Chr16g0377521 Lupinus albus
Lj2C466T13 Lonicera japonica
Lj2g0002663 Lotus japonicus
Lj2g0008453 Lotus japonicus
Lj3g0003371 Lotus japonicus
Lj4A217T67 Lonicera japonica
Lj4C217T16 Lonicera japonica
Lj4g0002557 Lotus japonicus
Lj9A384T37 Lonicera japonica
Lj9C386T1 Lonicera japonica
Lsat_1_v5_gn_2_78800 Lactuca sativa
Lsat_1_v5_gn_4_146800 Lactuca sativa
Lsat_1_v5_gn_4_146821 Lactuca sativa
Lsat_1_v5_gn_8_127401 Lactuca sativa
Manes.01G145000 Manihot esculenta
Manes.01G145100 Manihot esculenta
Manes.02G103400 Manihot esculenta
Manes.02G103600 Manihot esculenta
Manes.11G093500 Manihot esculenta
Mapoly0169s0015 Marchantia polymorpha
MBI05_g43883_MAGBIO Magnolia biondii
MCO03G297 Micromonas commoda
MD02G1133400 Malus domestica
MD02G1133500 Malus domestica
MD02G1133700 Malus domestica
MD10G1061200 Malus domestica
MD15G1246600 Malus domestica
MD15G1246700 Malus domestica
Medtr4g072210 Medicago truncatula
Medtr5g021980 Medicago truncatula
Medtr8g076020 Medicago truncatula
MELO3C007894.2 Cucumis melo
MELO3C016393.2 Cucumis melo
Migut.B00130 Erythranthe guttata
MSTRG.20025 Avicennia marina
MSTRG.2704 Avicennia marina
MSTRG.2705 Avicennia marina
Nitab4.5_0000438g0040 Nicotiana tabacum
Nitab4.5_0001154g0020 Nicotiana tabacum
Nitab4.5_0001959g0020 Nicotiana tabacum
Nitab4.5_0004254g0070 Nicotiana tabacum
Nitab4.5_0005721g0050 Nicotiana tabacum
Nitab4.5_0006119g0010 Nicotiana tabacum
Nitab4.5_0006143g0020 Nicotiana tabacum
Nitab4.5_0006286g0040 Nicotiana tabacum
Nn5g29286 Nelumbo nucifera
Nn5g29330 Nelumbo nucifera
Nn6g32314 Nelumbo nucifera
Nn6g32353 Nelumbo nucifera
Oeu005320.1 Olea europaea
Oeu012086.1 Olea europaea
Oeu035307.1 Olea europaea
Oeu046112.1 Olea europaea
Oeu048459.1 Olea europaea
Oeu060409.1 Olea europaea
Os06g0137300 Oryza sativa ssp. japonica
Os06g0715400 Oryza sativa ssp. japonica
Peaxi162Scf00034g00264 Petunia axillaris
Peaxi162Scf00083g00714 Petunia axillaris
Peaxi162Scf00083g00715 Petunia axillaris
Peaxi162Scf00684g00120 Petunia axillaris
PGR119G1411 Punica granatum
PGR119G1942 Punica granatum
PGSC0003DMG400003635 Solanum tuberosum
PGSC0003DMG400004929 Solanum tuberosum
Phvul.002G109100 Phaseolus vulgaris
Phvul.002G109200 Phaseolus vulgaris
Phvul.003G262700 Phaseolus vulgaris
Phvul.011G037800 Phaseolus vulgaris
Potri.004G164500 Populus trichocarpa
Potri.005G115500 Populus trichocarpa
Potri.007G012600 Populus trichocarpa
Potri.007G012700 Populus trichocarpa
Potri.009G126200 Populus trichocarpa
Pp3c12_18350 Physcomitrium patens
Pp3c3_27360 Physcomitrium patens
PRCOL_00005988 Prasinoderma coloniale
Prupe.7G167100 Prunus persica
Prupe.7G167200 Prunus persica
Prupe.8G082000 Prunus persica
Psat2g154800 Pisum sativum
Psat4g098560 Pisum sativum
Psat6g005760 Pisum sativum
Psat7g181560 Pisum sativum
PSO170G0469 Papaver somniferum
PSO170G1298 Papaver somniferum
PSO210G6416 Papaver somniferum
PSO700G0386 Papaver somniferum
QL06p033501 Quercus lobata
QL06p033515 Quercus lobata
QL11p046808 Quercus lobata
RcHm_v2.0_Chr2g0099581 Rosa chinensis
RcHm_v2.0_Chr2g0099591 Rosa chinensis
RcHm_v2.0_Chr6g0268561 Rosa chinensis
RcHm_v2.0_Chr6g0268601 Rosa chinensis
RcHm_v2.0_Chr6g0268681 Rosa chinensis
RcHm_v2.0_Chr6g0268781 Rosa chinensis
Rhsim05G0067000 Rhododendron simsii
Rhsim08G0034200 Rhododendron simsii
Rhsim10G0213200 Rhododendron simsii
Sabra04G0110600 Salix brachista
Sabra05G0094600 Salix brachista
Sabra07G0009800 Salix brachista
SalBow3G1042 Salvia bowleyana
SalBow3G3323 Salvia bowleyana
SalBow6G3565 Salvia bowleyana
Sc14g0001890 Simmondsia chinensis
Sc16g0002070 Simmondsia chinensis
Sc16g0002080 Simmondsia chinensis
Sed0007682 Sechium edule
Sed0016263 Sechium edule
Sed0027203 Sechium edule
SEGI_05042 Sequoiadendron giganteum
SEGI_18233 Sequoiadendron giganteum
SEGI_23040 Sequoiadendron giganteum
SEGI_32707 Sequoiadendron giganteum
SGA_v2.0_scaffold137G35090 Striga asiatica
SGA_v2.0_scaffold32G13252 Striga asiatica
SGA_v2.0_scaffold58G20442 Striga asiatica
SMO143G0294 Selaginella moellendorffii
SMO358G0186 Selaginella moellendorffii
Solyc02g083990.3 Solanum lycopersicum
Solyc02g084000.3 Solanum lycopersicum
Solyc03g033580.3 Solanum lycopersicum
Solyc04g077290.3 Solanum lycopersicum
Sopen02g028790 Solanum pennellii
Sopen02g028800 Solanum pennellii
Sopen03g006360 Solanum pennellii
Sopen04g030870 Solanum pennellii
Sp2g10490 Schrenkiella parvula
Sp2g30440 Schrenkiella parvula
Sp3g31420 Schrenkiella parvula
Sp3g31430 Schrenkiella parvula
Sp7g33880 Schrenkiella parvula
TAR376G0125 Trochodendron aralioides
TAR381G0830 Trochodendron aralioides
TAR381G1712 Trochodendron aralioides
TAR628G0959 Trochodendron aralioides
TAR636G2715 Trochodendron aralioides
THA.LOC104804106 Tarenaya hassleriana
THA.LOC104804260 Tarenaya hassleriana
THA.LOC104807492 Tarenaya hassleriana
Thecc.01G020200 Theobroma cacao
Thecc.01G020400 Theobroma cacao
Thecc.02G072800 Theobroma cacao
Thhalv10000994m.g Eutrema salsugineum
Thhalv10004494m.g Eutrema salsugineum
Thhalv10022777m.g Eutrema salsugineum
Thhalv10022830m.g Eutrema salsugineum
Thhalv10025665m.g Eutrema salsugineum
TPR.G18196 Trifolium pratense
TPR.G23765 Trifolium pratense
TPR.G30063 Trifolium pratense
TWI09G0584 Tripterygium wilfordii
TWI53G0067 Tripterygium wilfordii
TWI53G2031 Tripterygium wilfordii
TWI79G0606 Tripterygium wilfordii
unitig_60.g25828 Utricularia gibba
unitig_699.g19710 Utricularia gibba
unitig_899.g14709 Utricularia gibba
vmacro17407 Vaccinium macrocarpon
vmacro18418 Vaccinium macrocarpon
vmacro21916 Vaccinium macrocarpon
VMungo0157G0001 Vigna mungo
VMungo0251G1454 Vigna mungo
VMungo0251G2236 Vigna mungo
VMungo0251G2241 Vigna mungo
VMungo0251G3314 Vigna mungo
VMungo0251G3378 Vigna mungo
VMungo0251G3670 Vigna mungo
VMungo0464G0170 Vigna mungo
VMungo0464G0609 Vigna mungo
VMungo0464G0802 Vigna mungo
VMungo0464G1440 Vigna mungo
VMungo0464G1460 Vigna mungo
VMungo0464G1985 Vigna mungo
VMungo0485G0001 Vigna mungo
VMungo0540G0230 Vigna mungo
VMungo0647G1322 Vigna mungo
VMungo0647G2269 Vigna mungo
VMungo0675G0001 Vigna mungo
VMungo0720G1814 Vigna mungo
VMungo1127G1878 Vigna mungo
VMungo1127G1980 Vigna mungo
VMungo1215G0173 Vigna mungo
VMungo1215G1138 Vigna mungo
VMungo1215G2739 Vigna mungo
VMungo1215G3288 Vigna mungo
VMungo1215G3324 Vigna mungo
VMungo1267G0001 Vigna mungo
VMungo1309G1246 Vigna mungo
VMungo1309G1517 Vigna mungo
Zm00001eb228040 Zea mays
Zm00001eb356340 Zea mays

User provided reference genes

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