Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p09600 Brassica napus
A01p20360 Brassica napus
A02p30950 Brassica napus
A03p50500 Brassica napus
A06p45200 Brassica napus
A08p12770 Brassica napus
A08p13200 Brassica napus
A09p22930 Brassica napus
Aa31LG2G13020 Aethionema arabicum
Aa31LG6G260 Aethionema arabicum
Aa31sc89G130 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3349 Anthoceros agrestis
Actinidia02183 Actinidia chinensis
Actinidia10852 Actinidia chinensis
Actinidia12142 Actinidia chinensis
Actinidia12643 Actinidia chinensis
Actinidia18351 Actinidia chinensis
Actinidia21634 Actinidia chinensis
Actinidia23780 Actinidia chinensis
Actinidia25896 Actinidia chinensis
Actinidia27543 Actinidia chinensis
Actinidia31503 Actinidia chinensis
Actinidia33510 Actinidia chinensis
Ah.05g177950 Amaranthus hybridus
Ah.12g054140 Amaranthus hybridus
Ah.12g054150 Amaranthus hybridus
AL7G37100 Arabidopsis lyrata
AL7G37810 Arabidopsis lyrata
AL8G10820 Arabidopsis lyrata
Aqoxy3G02708 Aquilegia oxysepala
Aqoxy7G01250 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.180UYH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5L4YH4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6LE7D6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8HL8AF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C7EL2G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X0G6H5 Arachis hypogaea
AT4G16830 Arabidopsis thaliana
AT4G17520 Arabidopsis thaliana
AT5G47210 Arabidopsis thaliana
ATR0057G051 Amborella trichopoda
ATR0561G146 Amborella trichopoda
ATR0705G140 Amborella trichopoda
Atru.chr5.120 Acer truncatum
Atru.chr9.1239 Acer truncatum
AUR62007145 Chenopodium quinoa
AUR62013759 Chenopodium quinoa
AUR62018866 Chenopodium quinoa
AUR62023395 Chenopodium quinoa
BcaB04g18394 Brassica carinata
BcaB04g18425 Brassica carinata
BcaB07g30786 Brassica carinata
BcaC01g00266 Brassica carinata
BcaC02g09824 Brassica carinata
BcaC02g10806 Brassica carinata
BcaC03g16950 Brassica carinata
BcaC04g19353 Brassica carinata
BcaC04g21639 Brassica carinata
BcaC06g31406 Brassica carinata
BcaC06g33561 Brassica carinata
BcaC06g33563 Brassica carinata
BcaC06g34275 Brassica carinata
BcaC06g35280 Brassica carinata
BcaC07g38027 Brassica carinata
BcaC07g38085 Brassica carinata
BcaC07g42174 Brassica carinata
BcaC08g44282 Brassica carinata
BcaC09g50427 Brassica carinata
BcaC09g51634 Brassica carinata
BcaNung00084 Brassica carinata
BcaNung00142 Brassica carinata
BcaNung03458 Brassica carinata
BolC1t01082H Brassica oleracea
BolC1t02249H Brassica oleracea
BolC1t02503H Brassica oleracea
BolC1t02558H Brassica oleracea
BolC2t08027H Brassica oleracea
BolC2t10889H Brassica oleracea
BolC3t17215H Brassica oleracea
BolC3t20828H Brassica oleracea
BolC4t23994H Brassica oleracea
BolC4t25183H Brassica oleracea
BolC5t29725H Brassica oleracea
BolC5t32053H Brassica oleracea
BolC5t32068H Brassica oleracea
BolC6t35521H Brassica oleracea
BolC7t41249H Brassica oleracea
BolC7t42289H Brassica oleracea
BolC7t42351H Brassica oleracea
BolC7t43634H Brassica oleracea
BolC7t45390H Brassica oleracea
BolC8t48417H Brassica oleracea
BolC8t48418H Brassica oleracea
BolC8t48499H Brassica oleracea
BolC9t55814H Brassica oleracea
BolC9t59514H Brassica oleracea
BraA01t00902Z Brassica rapa
BraA01t01966Z Brassica rapa
BraA02t08106Z Brassica rapa
BraA03t14139Z Brassica rapa
BraA06t27389Z Brassica rapa
BraA08t33265Z Brassica rapa
BraA08t33302Z Brassica rapa
BraA09t37894Z Brassica rapa
C01p11170 Brassica napus
C01p25530 Brassica napus
C01p26140 Brassica napus
C02p18860 Brassica napus
C02p48560 Brassica napus
C03p61440 Brassica napus
C04p24940 Brassica napus
C04p36170 Brassica napus
C05p09840 Brassica napus
C05p33270 Brassica napus
C05p33450 Brassica napus
C06p11470 Brassica napus
C06p17000 Brassica napus
C06p24330 Brassica napus
C07p08360 Brassica napus
C07p17830 Brassica napus
C07p18400 Brassica napus
C07p30910 Brassica napus
C07p48820 Brassica napus
C08p52330 Brassica napus
C09p29510 Brassica napus
CAN.G1497.15 Capsicum annuum
CAN.G62.10 Capsicum annuum
CAN.G761.26 Capsicum annuum
CAN.G845.17 Capsicum annuum
CANSAT01G0982 Cannabis sativa
CANSAT21G2599 Cannabis sativa
CANSAT25G2969 Cannabis sativa
CARHR174150 Cardamine hirsuta
CARHR223450 Cardamine hirsuta
CARHR224220 Cardamine hirsuta
Carub.0007s2387 Capsella rubella
Carub.0007s2451 Capsella rubella
Carub.0008s0053 Capsella rubella
Ca_08064_v3 Cicer arietinum L.
Ca_25800_v3 Cicer arietinum L.
CBR_g20411 Chara braunii
Cc00_g26000 Coffea canephora
Cc08_g11620 Coffea canephora
CDE02G0684 Ceratophyllum demersum
CDE05G1379 Ceratophyllum demersum
CDE06G0510 Ceratophyllum demersum
CDE06G1167 Ceratophyllum demersum
CDE06G1858 Ceratophyllum demersum
CDE06G2514 Ceratophyllum demersum
CDE11G0377 Ceratophyllum demersum
Cfa011064 Carpinus fangiana
Cfa012663 Carpinus fangiana
Ciclev10020747m.g Citrus clementina
CiPaw.12G048100 Carya illinoinensis
CiPaw.13G025800 Carya illinoinensis
CiPaw.14G020000 Carya illinoinensis
CiPaw.14G041200 Carya illinoinensis
ClCG06G002440 Citrullus lanatus
ClCG09G012870 Citrullus lanatus
COL.COLO4_10016 Corchorus olitorius
COL.COLO4_12401 Corchorus olitorius
Cpa.g.c46241 Carica papaya
Cpa.g.sc22.60 Carica papaya
Cpa.g.sc672.2 Carica papaya
Cre09.g393358 Chlamydomonas reinhardtii
CsaV3_3G049990 Cucumis sativus L.
CsaV3_6G008690 Cucumis sativus L.
CsaV3_6G008700 Cucumis sativus L.
CSS0000873 Camellia sinensis var. sinensis
CSS0006185 Camellia sinensis var. sinensis
CSS0018232 Camellia sinensis var. sinensis
CSS0024114 Camellia sinensis var. sinensis
CSS0038516 Camellia sinensis var. sinensis
CSS0045240 Camellia sinensis var. sinensis
CSS0045630 Camellia sinensis var. sinensis
DCAR_000646 Daucus carota
DCAR_004601 Daucus carota
DCAR_016119 Daucus carota
DCAR_025063 Daucus carota
DCAR_029471 Daucus carota
Dinv21687 Davidia involucrata
Dinv28852 Davidia involucrata
Dinv43611 Davidia involucrata
Dinv44058 Davidia involucrata
Duzib068G1311 Durio zibethinus
Duzib084G0208 Durio zibethinus
Duzib138G1049 Durio zibethinus
Duzib205G0586 Durio zibethinus
Duzib205G0990 Durio zibethinus
Duzib268G0869 Durio zibethinus
ECA233G0654 Erigeron canadensis
ECA236G1942 Erigeron canadensis
ECA236G2353 Erigeron canadensis
ECA240G0458 Erigeron canadensis
EL10Ac1g00747 Beta vulgaris
EL10Ac5g12298 Beta vulgaris
Eucgr.D02118 Eucalyptus grandis
FAN01G0869 Fragaria x ananassa
FAN03G2297 Fragaria x ananassa
FAN04G2274 Fragaria x ananassa
FAN06G0752 Fragaria x ananassa
FAN06G2226 Fragaria x ananassa
FAN08G3266 Fragaria x ananassa
FAN10G2227 Fragaria x ananassa
FAN10G3725 Fragaria x ananassa
FAN13G1753 Fragaria x ananassa
FAN18G3763 Fragaria x ananassa
FvH4_5g20020 Fragaria vesca
FvH4_7g10280 Fragaria vesca
Glyma.03G110300 Glycine max
Glyma.07G114600 Glycine max
Glyma.09G243200 Glycine max
Glyma.18G251400 Glycine max
Glyma.18G257400 Glycine max
Glyma.20G246700 Glycine max
Gohir.A08G029201 Gossypium hirsutum
Gohir.A08G138700 Gossypium hirsutum
Gohir.A08G138900 Gossypium hirsutum
Gohir.A08G166200 Gossypium hirsutum
Gohir.A09G196800 Gossypium hirsutum
Gohir.D08G039900 Gossypium hirsutum
Gohir.D08G160000 Gossypium hirsutum
Gohir.D08G160100 Gossypium hirsutum
Gohir.D08G185100 Gossypium hirsutum
Gohir.D09G191400 Gossypium hirsutum
Gorai.004G038700 Gossypium raimondii
Gorai.004G166200 Gossypium raimondii
Gorai.004G166300 Gossypium raimondii
Gorai.004G194400 Gossypium raimondii
Gorai.006G214200 Gossypium raimondii
GSVIVG01002125001 Vitis vinifera
GSVIVG01018290001 Vitis vinifera
HanXRQChr03g0092961 Helianthus annuus
HanXRQChr04g0106031 Helianthus annuus
HanXRQChr06g0168331 Helianthus annuus
HanXRQChr10g0290861 Helianthus annuus
HanXRQChr10g0305481 Helianthus annuus
HanXRQChr13g0423741 Helianthus annuus
HanXRQChr16g0510681 Helianthus annuus
HanXRQChr16g0530721 Helianthus annuus
Haze_02853 Corylus avellana
Haze_07983 Corylus avellana
Hma1.2p1_0535F.1_g173810 Hydrangea macrophylla
Hma1.2p1_2756F.1_g328020 Hydrangea macrophylla
HPP92_000442 Vanilla planifolia
HPP92_003948 Vanilla planifolia
HPP92_023976 Vanilla planifolia
Hund11332 Selenicereus undatus
Hund14503 Selenicereus undatus
Hund17103 Selenicereus undatus
Hund27411 Selenicereus undatus
Lalb_Chr01g0021591 Lupinus albus
Lalb_Chr03g0040421 Lupinus albus
Lalb_Chr07g0195391 Lupinus albus
Lalb_Chr12g0210561 Lupinus albus
Lalb_Chr13g0290621 Lupinus albus
Lalb_Chr19g0126511 Lupinus albus
Lj1g0023152 Lotus japonicus
Lj2C226G6 Lonicera japonica
Lj2g0007100 Lotus japonicus
Lj3g0008598 Lotus japonicus
Lj5g0008499 Lotus japonicus
Lj7A548T43 Lonicera japonica
Lj7P558T34 Lonicera japonica
Lj8A275G67 Lonicera japonica
Lj9A555T37 Lonicera japonica
Lsat_1_v5_gn_3_126861 Lactuca sativa
Lsat_1_v5_gn_6_68740 Lactuca sativa
Lsat_1_v5_gn_6_94060 Lactuca sativa
Lsat_1_v5_gn_7_12161 Lactuca sativa
Lsat_1_v5_gn_9_107900 Lactuca sativa
Manes.01G086200 Manihot esculenta
Manes.01G257404 Manihot esculenta
Manes.01G274200 Manihot esculenta
Manes.02G043300 Manihot esculenta
Manes.05G055400 Manihot esculenta
Mapoly0044s0032 Marchantia polymorpha
Mapoly0161s0012 Marchantia polymorpha
Mapoly0172s0023 Marchantia polymorpha
MBI01_g02258_MAGBIO Magnolia biondii
MBI04_g22922_MAGBIO Magnolia biondii
MBI07_g04745_MAGBIO Magnolia biondii
MBI07_g09666_MAGBIO Magnolia biondii
MD02G1213500 Malus domestica
MD04G1050100 Malus domestica
MD06G1049800 Malus domestica
MD07G1109500 Malus domestica
Medtr7g081660 Medicago truncatula
Medtr8g006960 Medicago truncatula
Medtr8g007425 Medicago truncatula
MELO3C003317.2 Cucumis melo
MELO3C022289.2 Cucumis melo
MELO3C033858.2 Cucumis melo
Migut.A01034 Erythranthe guttata
Migut.A01037 Erythranthe guttata
Migut.B01530 Erythranthe guttata
MSTRG.12141 Avicennia marina
MSTRG.17125 Avicennia marina
MSTRG.20686 Avicennia marina
MSTRG.4933 Avicennia marina
Nitab4.5_0000185g0150 Nicotiana tabacum
Nitab4.5_0000500g0030 Nicotiana tabacum
Nitab4.5_0000506g0020 Nicotiana tabacum
Nitab4.5_0000920g0060 Nicotiana tabacum
Nitab4.5_0002685g0040 Nicotiana tabacum
Nitab4.5_0003456g0010 Nicotiana tabacum
Nitab4.5_0006594g0050 Nicotiana tabacum
Nitab4.5_0009955g0030 Nicotiana tabacum
Nn2g14485 Nelumbo nucifera
Nn6g33814 Nelumbo nucifera
Oeu002321.1 Olea europaea
Oeu011237.1 Olea europaea
Oeu018041.1 Olea europaea
Oeu018042.1 Olea europaea
Oeu020083.3 Olea europaea
Oeu031157.1 Olea europaea
Oeu031414.1 Olea europaea
Oeu037449.2 Olea europaea
Oeu040197.1 Olea europaea
Oeu040683.3 Olea europaea
Oeu045667.1 Olea europaea
Oeu054073.1 Olea europaea
Os01g0603000 Oryza sativa ssp. japonica
Os01g0721900 Oryza sativa ssp. japonica
Os03g0845300 Oryza sativa ssp. japonica
Os05g0533100 Oryza sativa ssp. japonica
Os05g0589600 Oryza sativa ssp. japonica
Peaxi162Scf00102g00839 Petunia axillaris
Peaxi162Scf00190g01013 Petunia axillaris
Peaxi162Scf00446g00611 Petunia axillaris
Peaxi162Scf00475g00416 Petunia axillaris
PGR031G0446 Punica granatum
PGR042G1184 Punica granatum
PGSC0003DMG400020488 Solanum tuberosum
PGSC0003DMG400025998 Solanum tuberosum
Phvul.007G003500 Phaseolus vulgaris
Phvul.008G047300 Phaseolus vulgaris
Phvul.010G049300 Phaseolus vulgaris
Potri.001G153000 Populus trichocarpa
Potri.002G138300 Populus trichocarpa
Potri.003G081600 Populus trichocarpa
Potri.014G049300 Populus trichocarpa
Pp3c1_6130 Physcomitrium patens
Pp3c2_30530 Physcomitrium patens
Pp3c2_30970 Physcomitrium patens
Pp3c7_26560 Physcomitrium patens
Prupe.2G132500 Prunus persica
Prupe.5G060200 Prunus persica
Psat3g099160 Pisum sativum
Psat4g224720 Pisum sativum
PSO017G2053 Papaver somniferum
PSO063G0952 Papaver somniferum
PSO063G2805 Papaver somniferum
PSO063G4392 Papaver somniferum
PSO675G3432 Papaver somniferum
PSO675G5190 Papaver somniferum
PSO717G0024 Papaver somniferum
PSO782G3687 Papaver somniferum
PSO832G1381 Papaver somniferum
QL04p030014 Quercus lobata
QL09p049052 Quercus lobata
QL12p009567 Quercus lobata
RcHm_v2.0_Chr1g0348031 Rosa chinensis
RcHm_v2.0_Chr7g0204831 Rosa chinensis
RcHm_v2.0_Chr7g0204851 Rosa chinensis
Rhsim01G0141100 Rhododendron simsii
Rhsim07G0036400 Rhododendron simsii
Rhsim07G0117800 Rhododendron simsii
Sabra01G0122800 Salix brachista
Sabra02G0107900 Salix brachista
Sabra03G0052600 Salix brachista
Sabra14G0035100 Salix brachista
SalBow5G0459 Salvia bowleyana
SalBow5G2230 Salvia bowleyana
Sc01g0008170 Simmondsia chinensis
Sc05g0001830 Simmondsia chinensis
Sc22g0001090 Simmondsia chinensis
Sc26g0001630 Simmondsia chinensis
Sed0000430 Sechium edule
Sed0001913 Sechium edule
Sed0019221 Sechium edule
Sed0021627 Sechium edule
SEGI_07756 Sequoiadendron giganteum
SEGI_09917 Sequoiadendron giganteum
SEGI_34546 Sequoiadendron giganteum
SGA_v2.0_scaffold104G30211 Striga asiatica
SGA_v2.0_scaffold116G32282 Striga asiatica
SGA_v2.0_scaffold127G34016 Striga asiatica
SGA_v2.0_scaffold1333G53914 Striga asiatica
SGA_v2.0_scaffold199G41235 Striga asiatica
SGA_v2.0_scaffold4G02391 Striga asiatica
SGA_v2.0_scaffold51G18896 Striga asiatica
SGA_v2.0_scaffold52G19232 Striga asiatica
SGA_v2.0_scaffold902G53710 Striga asiatica
SMO203G0040 Selaginella moellendorffii
SMO281G0002 Selaginella moellendorffii
Solyc01g090190.3 Solanum lycopersicum
Solyc08g007220.3 Solanum lycopersicum
Sopen01g035980 Solanum pennellii
Sopen08g003170 Solanum pennellii
Sopen08g003180 Solanum pennellii
Sp2g12010 Schrenkiella parvula
Sp7g16640 Schrenkiella parvula
Sp7g17250 Schrenkiella parvula
TAR374G1144 Trochodendron aralioides
TAR375G0305 Trochodendron aralioides
TAR624G0231 Trochodendron aralioides
TAR629G2824 Trochodendron aralioides
TAR636G2146 Trochodendron aralioides
THA.LOC104807918 Tarenaya hassleriana
THA.LOC104807919 Tarenaya hassleriana
THA.LOC104807920 Tarenaya hassleriana
THA.LOC104814464 Tarenaya hassleriana
Thecc.01G395600 Theobroma cacao
Thecc.03G244100 Theobroma cacao
Thhalv10000938m.g Eutrema salsugineum
Thhalv10025512m.g Eutrema salsugineum
Thhalv10025552m.g Eutrema salsugineum
TPR.G28792 Trifolium pratense
TPR.G35190 Trifolium pratense
TWI14G1246 Tripterygium wilfordii
TWI23G0570 Tripterygium wilfordii
TWI36G0339 Tripterygium wilfordii
TWI59G1071 Tripterygium wilfordii
TWI60G0908 Tripterygium wilfordii
TWI81G0055 Tripterygium wilfordii
unitig_750.g28411 Utricularia gibba
vmacro00034 Vaccinium macrocarpon
vmacro13501 Vaccinium macrocarpon
vmacro14134 Vaccinium macrocarpon
vmacro21064 Vaccinium macrocarpon
VMungo0331G1076 Vigna mungo
VMungo0720G1714 Vigna mungo
VMungo1215G1200 Vigna mungo
VMungo1383G0355 Vigna mungo
Zm00001eb136290 Zea mays
Zm00001eb154690 Zea mays
Zm00001eb154710 Zea mays
Zm00001eb287180 Zea mays
Zm00001eb345200 Zea mays

User provided reference genes

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