Gene: AT4G16830
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G16830
- Transcript Identifier AT4G16830.1
- Gene Type Coding gene
- Location Chr4 : 9470621-9472308 : positive
Gene Family Information
- ID HOM05D001429
- #Genes/#Species 440/97
- Phylogenetic origin
- ID ORTHO05D001420
- #Genes/#Species 411/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G16830.1
- uniprot O23523
Descriptions
- Description Hyaluronan / mRNA binding family
- Computational description Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071472 | IMP | Gene Ontology | cellular response to salt stress | 1 |
| GO:0009738 | IEA | GOA Database | abscisic acid-activated signaling pathway | |
| GO:0071470 | IMP | Gene Ontology | cellular response to osmotic stress | 1 |
| GO:0009787 | IMP | Gene Ontology | regulation of abscisic acid-activated signaling pathway | 1 |
| GO:0009737 | IEP | Gene Ontology | response to abscisic acid | 1 |
| GO:0009651 | IEP | Gene Ontology | response to salt stress | 1 |
| GO:0006970 | IEP | Gene Ontology | response to osmotic stress | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IBA | Gene Ontology | RNA binding | 2 |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 1 2 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA, HDA IBA | Gene Ontology | cytoplasm | 1 2 4 |
| GO:0005634 | IDA IEA | GOA Database | nucleus | |
| GO:0005634 | HDA IBA | Gene Ontology | nucleus | 2 4 |
| GO:0048471 | IEA | GOA Database | perinuclear region of cytoplasm | |
| GO:0048471 | IDA | Gene Ontology | perinuclear region of cytoplasm | 1 |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |