Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001429', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '440', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p09600' => 'bna', 'A01p20360' => 'bna', 'A02p30950' => 'bna', 'A03p50500' => 'bna', 'A06p45200' => 'bna', 'A08p12770' => 'bna', 'A08p13200' => 'bna', 'A09p22930' => 'bna', 'Aa31LG2G13020' => 'aar', 'Aa31LG6G260' => 'aar', 'Aa31sc89G130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3349' => 'aag', 'Actinidia02183' => 'ach', 'Actinidia10852' => 'ach', 'Actinidia12142' => 'ach', 'Actinidia12643' => 'ach', 'Actinidia18351' => 'ach', 'Actinidia21634' => 'ach', 'Actinidia23780' => 'ach', 'Actinidia25896' => 'ach', 'Actinidia27543' => 'ach', 'Actinidia31503' => 'ach', 'Actinidia33510' => 'ach', 'Ah.05g177950' => 'amhyb', 'Ah.12g054140' => 'amhyb', 'Ah.12g054150' => 'amhyb', 'AL7G37100' => 'aly', 'AL7G37810' => 'aly', 'AL8G10820' => 'aly', 'Aqoxy3G02708' => 'aox', 'Aqoxy7G01250' => 'aox', 'arahy.Tifrunner.gnm1.ann1.180UYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L4YH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LE7D6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HL8AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7EL2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0G6H5' => 'arhy', 'AT4G16830' => 'ath', 'AT4G17520' => 'ath', 'AT5G47210' => 'ath', 'ATR0057G051' => 'atr', 'ATR0561G146' => 'atr', 'ATR0705G140' => 'atr', 'Atru.chr5.120' => 'acertr', 'Atru.chr9.1239' => 'acertr', 'AUR62007145' => 'cqu', 'AUR62013759' => 'cqu', 'AUR62018866' => 'cqu', 'AUR62023395' => 'cqu', 'BcaB04g18394' => 'bca', 'BcaB04g18425' => 'bca', 'BcaB07g30786' => 'bca', 'BcaC01g00266' => 'bca', 'BcaC02g09824' => 'bca', 'BcaC02g10806' => 'bca', 'BcaC03g16950' => 'bca', 'BcaC04g19353' => 'bca', 'BcaC04g21639' => 'bca', 'BcaC06g31406' => 'bca', 'BcaC06g33561' => 'bca', 'BcaC06g33563' => 'bca', 'BcaC06g34275' => 'bca', 'BcaC06g35280' => 'bca', 'BcaC07g38027' => 'bca', 'BcaC07g38085' => 'bca', 'BcaC07g42174' => 'bca', 'BcaC08g44282' => 'bca', 'BcaC09g50427' => 'bca', 'BcaC09g51634' => 'bca', 'BcaNung00084' => 'bca', 'BcaNung00142' => 'bca', 'BcaNung03458' => 'bca', 'BolC1t01082H' => 'bol', 'BolC1t02249H' => 'bol', 'BolC1t02503H' => 'bol', 'BolC1t02558H' => 'bol', 'BolC2t08027H' => 'bol', 'BolC2t10889H' => 'bol', 'BolC3t17215H' => 'bol', 'BolC3t20828H' => 'bol', 'BolC4t23994H' => 'bol', 'BolC4t25183H' => 'bol', 'BolC5t29725H' => 'bol', 'BolC5t32053H' => 'bol', 'BolC5t32068H' => 'bol', 'BolC6t35521H' => 'bol', 'BolC7t41249H' => 'bol', 'BolC7t42289H' => 'bol', 'BolC7t42351H' => 'bol', 'BolC7t43634H' => 'bol', 'BolC7t45390H' => 'bol', 'BolC8t48417H' => 'bol', 'BolC8t48418H' => 'bol', 'BolC8t48499H' => 'bol', 'BolC9t55814H' => 'bol', 'BolC9t59514H' => 'bol', 'BraA01t00902Z' => 'bra', 'BraA01t01966Z' => 'bra', 'BraA02t08106Z' => 'bra', 'BraA03t14139Z' => 'bra', 'BraA06t27389Z' => 'bra', 'BraA08t33265Z' => 'bra', 'BraA08t33302Z' => 'bra', 'BraA09t37894Z' => 'bra', 'C01p11170' => 'bna', 'C01p25530' => 'bna', 'C01p26140' => 'bna', 'C02p18860' => 'bna', 'C02p48560' => 'bna', 'C03p61440' => 'bna', 'C04p24940' => 'bna', 'C04p36170' => 'bna', 'C05p09840' => 'bna', 'C05p33270' => 'bna', 'C05p33450' => 'bna', 'C06p11470' => 'bna', 'C06p17000' => 'bna', 'C06p24330' => 'bna', 'C07p08360' => 'bna', 'C07p17830' => 'bna', 'C07p18400' => 'bna', 'C07p30910' => 'bna', 'C07p48820' => 'bna', 'C08p52330' => 'bna', 'C09p29510' => 'bna', 'CAN.G1497.15' => 'can', 'CAN.G62.10' => 'can', 'CAN.G761.26' => 'can', 'CAN.G845.17' => 'can', 'CANSAT01G0982' => 'cansat', 'CANSAT21G2599' => 'cansat', 'CANSAT25G2969' => 'cansat', 'CARHR174150' => 'chi', 'CARHR223450' => 'chi', 'CARHR224220' => 'chi', 'Carub.0007s2387' => 'cru', 'Carub.0007s2451' => 'cru', 'Carub.0008s0053' => 'cru', 'Ca_08064_v3' => 'car', 'Ca_25800_v3' => 'car', 'CBR_g20411' => 'cbr', 'Cc00_g26000' => 'ccan', 'Cc08_g11620' => 'ccan', 'CDE02G0684' => 'cde', 'CDE05G1379' => 'cde', 'CDE06G0510' => 'cde', 'CDE06G1167' => 'cde', 'CDE06G1858' => 'cde', 'CDE06G2514' => 'cde', 'CDE11G0377' => 'cde', 'Cfa011064' => 'cfa', 'Cfa012663' => 'cfa', 'Ciclev10020747m.g' => 'ccl', 'CiPaw.12G048100' => 'cil', 'CiPaw.13G025800' => 'cil', 'CiPaw.14G020000' => 'cil', 'CiPaw.14G041200' => 'cil', 'ClCG06G002440' => 'cla', 'ClCG09G012870' => 'cla', 'COL.COLO4_10016' => 'col', 'COL.COLO4_12401' => 'col', 'Cpa.g.c46241' => 'cpa', 'Cpa.g.sc22.60' => 'cpa', 'Cpa.g.sc672.2' => 'cpa', 'Cre09.g393358' => 'cre', 'CsaV3_3G049990' => 'csa', 'CsaV3_6G008690' => 'csa', 'CsaV3_6G008700' => 'csa', 'CSS0000873' => 'camsi', 'CSS0006185' => 'camsi', 'CSS0018232' => 'camsi', 'CSS0024114' => 'camsi', 'CSS0038516' => 'camsi', 'CSS0045240' => 'camsi', 'CSS0045630' => 'camsi', 'DCAR_000646' => 'dca', 'DCAR_004601' => 'dca', 'DCAR_016119' => 'dca', 'DCAR_025063' => 'dca', 'DCAR_029471' => 'dca', 'Dinv21687' => 'din', 'Dinv28852' => 'din', 'Dinv43611' => 'din', 'Dinv44058' => 'din', 'Duzib068G1311' => 'dzi', 'Duzib084G0208' => 'dzi', 'Duzib138G1049' => 'dzi', 'Duzib205G0586' => 'dzi', 'Duzib205G0990' => 'dzi', 'Duzib268G0869' => 'dzi', 'ECA233G0654' => 'eca', 'ECA236G1942' => 'eca', 'ECA236G2353' => 'eca', 'ECA240G0458' => 'eca', 'EL10Ac1g00747' => 'bvu', 'EL10Ac5g12298' => 'bvu', 'Eucgr.D02118' => 'egr', 'FAN01G0869' => 'fan', 'FAN03G2297' => 'fan', 'FAN04G2274' => 'fan', 'FAN06G0752' => 'fan', 'FAN06G2226' => 'fan', 'FAN08G3266' => 'fan', 'FAN10G2227' => 'fan', 'FAN10G3725' => 'fan', 'FAN13G1753' => 'fan', 'FAN18G3763' => 'fan', 'FvH4_5g20020' => 'fve', 'FvH4_7g10280' => 'fve', 'Glyma.03G110300' => 'gma', 'Glyma.07G114600' => 'gma', 'Glyma.09G243200' => 'gma', 'Glyma.18G251400' => 'gma', 'Glyma.18G257400' => 'gma', 'Glyma.20G246700' => 'gma', 'Gohir.A08G029201' => 'ghi', 'Gohir.A08G138700' => 'ghi', 'Gohir.A08G138900' => 'ghi', 'Gohir.A08G166200' => 'ghi', 'Gohir.A09G196800' => 'ghi', 'Gohir.D08G039900' => 'ghi', 'Gohir.D08G160000' => 'ghi', 'Gohir.D08G160100' => 'ghi', 'Gohir.D08G185100' => 'ghi', 'Gohir.D09G191400' => 'ghi', 'Gorai.004G038700' => 'gra', 'Gorai.004G166200' => 'gra', 'Gorai.004G166300' => 'gra', 'Gorai.004G194400' => 'gra', 'Gorai.006G214200' => 'gra', 'GSVIVG01002125001' => 'vvi', 'GSVIVG01018290001' => 'vvi', 'HanXRQChr03g0092961' => 'han', 'HanXRQChr04g0106031' => 'han', 'HanXRQChr06g0168331' => 'han', 'HanXRQChr10g0290861' => 'han', 'HanXRQChr10g0305481' => 'han', 'HanXRQChr13g0423741' => 'han', 'HanXRQChr16g0510681' => 'han', 'HanXRQChr16g0530721' => 'han', 'Haze_02853' => 'cav', 'Haze_07983' => 'cav', 'Hma1.2p1_0535F.1_g173810' => 'hma', 'Hma1.2p1_2756F.1_g328020' => 'hma', 'HPP92_000442' => 'vpl', 'HPP92_003948' => 'vpl', 'HPP92_023976' => 'vpl', 'Hund11332' => 'sun', 'Hund14503' => 'sun', 'Hund17103' => 'sun', 'Hund27411' => 'sun', 'Lalb_Chr01g0021591' => 'lal', 'Lalb_Chr03g0040421' => 'lal', 'Lalb_Chr07g0195391' => 'lal', 'Lalb_Chr12g0210561' => 'lal', 'Lalb_Chr13g0290621' => 'lal', 'Lalb_Chr19g0126511' => 'lal', 'Lj1g0023152' => 'lja', 'Lj2C226G6' => 'lonja', 'Lj2g0007100' => 'lja', 'Lj3g0008598' => 'lja', 'Lj5g0008499' => 'lja', 'Lj7A548T43' => 'lonja', 'Lj7P558T34' => 'lonja', 'Lj8A275G67' => 'lonja', 'Lj9A555T37' => 'lonja', 'Lsat_1_v5_gn_3_126861' => 'lsa', 'Lsat_1_v5_gn_6_68740' => 'lsa', 'Lsat_1_v5_gn_6_94060' => 'lsa', 'Lsat_1_v5_gn_7_12161' => 'lsa', 'Lsat_1_v5_gn_9_107900' => 'lsa', 'Manes.01G086200' => 'mes', 'Manes.01G257404' => 'mes', 'Manes.01G274200' => 'mes', 'Manes.02G043300' => 'mes', 'Manes.05G055400' => 'mes', 'Mapoly0044s0032' => 'mpo', 'Mapoly0161s0012' => 'mpo', 'Mapoly0172s0023' => 'mpo', 'MBI01_g02258_MAGBIO' => 'mbi', 'MBI04_g22922_MAGBIO' => 'mbi', 'MBI07_g04745_MAGBIO' => 'mbi', 'MBI07_g09666_MAGBIO' => 'mbi', 'MD02G1213500' => 'mdo', 'MD04G1050100' => 'mdo', 'MD06G1049800' => 'mdo', 'MD07G1109500' => 'mdo', 'Medtr7g081660' => 'mtr', 'Medtr8g006960' => 'mtr', 'Medtr8g007425' => 'mtr', 'MELO3C003317.2' => 'cme', 'MELO3C022289.2' => 'cme', 'MELO3C033858.2' => 'cme', 'Migut.A01034' => 'egut', 'Migut.A01037' => 'egut', 'Migut.B01530' => 'egut', 'MSTRG.12141' => 'ama', 'MSTRG.17125' => 'ama', 'MSTRG.20686' => 'ama', 'MSTRG.4933' => 'ama', 'Nitab4.5_0000185g0150' => 'nta', 'Nitab4.5_0000500g0030' => 'nta', 'Nitab4.5_0000506g0020' => 'nta', 'Nitab4.5_0000920g0060' => 'nta', 'Nitab4.5_0002685g0040' => 'nta', 'Nitab4.5_0003456g0010' => 'nta', 'Nitab4.5_0006594g0050' => 'nta', 'Nitab4.5_0009955g0030' => 'nta', 'Nn2g14485' => 'nnu', 'Nn6g33814' => 'nnu', 'Oeu002321.1' => 'oeu', 'Oeu011237.1' => 'oeu', 'Oeu018041.1' => 'oeu', 'Oeu018042.1' => 'oeu', 'Oeu020083.3' => 'oeu', 'Oeu031157.1' => 'oeu', 'Oeu031414.1' => 'oeu', 'Oeu037449.2' => 'oeu', 'Oeu040197.1' => 'oeu', 'Oeu040683.3' => 'oeu', 'Oeu045667.1' => 'oeu', 'Oeu054073.1' => 'oeu', 'Os01g0603000' => 'osa', 'Os01g0721900' => 'osa', 'Os03g0845300' => 'osa', 'Os05g0533100' => 'osa', 'Os05g0589600' => 'osa', 'Peaxi162Scf00102g00839' => 'pax', 'Peaxi162Scf00190g01013' => 'pax', 'Peaxi162Scf00446g00611' => 'pax', 'Peaxi162Scf00475g00416' => 'pax', 'PGR031G0446' => 'pgr', 'PGR042G1184' => 'pgr', 'PGSC0003DMG400020488' => 'stu', 'PGSC0003DMG400025998' => 'stu', 'Phvul.007G003500' => 'pvu', 'Phvul.008G047300' => 'pvu', 'Phvul.010G049300' => 'pvu', 'Potri.001G153000' => 'ptr', 'Potri.002G138300' => 'ptr', 'Potri.003G081600' => 'ptr', 'Potri.014G049300' => 'ptr', 'Pp3c1_6130' => 'ppa', 'Pp3c2_30530' => 'ppa', 'Pp3c2_30970' => 'ppa', 'Pp3c7_26560' => 'ppa', 'Prupe.2G132500' => 'ppe', 'Prupe.5G060200' => 'ppe', 'Psat3g099160' => 'psa', 'Psat4g224720' => 'psa', 'PSO017G2053' => 'pso', 'PSO063G0952' => 'pso', 'PSO063G2805' => 'pso', 'PSO063G4392' => 'pso', 'PSO675G3432' => 'pso', 'PSO675G5190' => 'pso', 'PSO717G0024' => 'pso', 'PSO782G3687' => 'pso', 'PSO832G1381' => 'pso', 'QL04p030014' => 'qlo', 'QL09p049052' => 'qlo', 'QL12p009567' => 'qlo', 'RcHm_v2.0_Chr1g0348031' => 'rch', 'RcHm_v2.0_Chr7g0204831' => 'rch', 'RcHm_v2.0_Chr7g0204851' => 'rch', 'Rhsim01G0141100' => 'rsi', 'Rhsim07G0036400' => 'rsi', 'Rhsim07G0117800' => 'rsi', 'Sabra01G0122800' => 'sbr', 'Sabra02G0107900' => 'sbr', 'Sabra03G0052600' => 'sbr', 'Sabra14G0035100' => 'sbr', 'SalBow5G0459' => 'sbo', 'SalBow5G2230' => 'sbo', 'Sc01g0008170' => 'sci', 'Sc05g0001830' => 'sci', 'Sc22g0001090' => 'sci', 'Sc26g0001630' => 'sci', 'Sed0000430' => 'sed', 'Sed0001913' => 'sed', 'Sed0019221' => 'sed', 'Sed0021627' => 'sed', 'SEGI_07756' => 'sgi', 'SEGI_09917' => 'sgi', 'SEGI_34546' => 'sgi', 'SGA_v2.0_scaffold104G30211' => 'sas', 'SGA_v2.0_scaffold116G32282' => 'sas', 'SGA_v2.0_scaffold127G34016' => 'sas', 'SGA_v2.0_scaffold1333G53914' => 'sas', 'SGA_v2.0_scaffold199G41235' => 'sas', 'SGA_v2.0_scaffold4G02391' => 'sas', 'SGA_v2.0_scaffold51G18896' => 'sas', 'SGA_v2.0_scaffold52G19232' => 'sas', 'SGA_v2.0_scaffold902G53710' => 'sas', 'SMO203G0040' => 'smo', 'SMO281G0002' => 'smo', 'Solyc01g090190.3' => 'sly', 'Solyc08g007220.3' => 'sly', 'Sopen01g035980' => 'spe', 'Sopen08g003170' => 'spe', 'Sopen08g003180' => 'spe', 'Sp2g12010' => 'spa', 'Sp7g16640' => 'spa', 'Sp7g17250' => 'spa', 'TAR374G1144' => 'tar', 'TAR375G0305' => 'tar', 'TAR624G0231' => 'tar', 'TAR629G2824' => 'tar', 'TAR636G2146' => 'tar', 'THA.LOC104807918' => 'tha', 'THA.LOC104807919' => 'tha', 'THA.LOC104807920' => 'tha', 'THA.LOC104814464' => 'tha', 'Thecc.01G395600' => 'tca', 'Thecc.03G244100' => 'tca', 'Thhalv10000938m.g' => 'esa', 'Thhalv10025512m.g' => 'esa', 'Thhalv10025552m.g' => 'esa', 'TPR.G28792' => 'tpr', 'TPR.G35190' => 'tpr', 'TWI14G1246' => 'twi', 'TWI23G0570' => 'twi', 'TWI36G0339' => 'twi', 'TWI59G1071' => 'twi', 'TWI60G0908' => 'twi', 'TWI81G0055' => 'twi', 'unitig_750.g28411' => 'ugi', 'vmacro00034' => 'vma', 'vmacro13501' => 'vma', 'vmacro14134' => 'vma', 'vmacro21064' => 'vma', 'VMungo0331G1076' => 'vmu', 'VMungo0720G1714' => 'vmu', 'VMungo1215G1200' => 'vmu', 'VMungo1383G0355' => 'vmu', 'Zm00001eb136290' => 'zma', 'Zm00001eb154690' => 'zma', 'Zm00001eb154710' => 'zma', 'Zm00001eb287180' => 'zma', 'Zm00001eb345200' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001429', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001429' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001429', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '440', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001429' ) ), 'genes' => array( 'A01p09600' => 'bna', 'A01p20360' => 'bna', 'A02p30950' => 'bna', 'A03p50500' => 'bna', 'A06p45200' => 'bna', 'A08p12770' => 'bna', 'A08p13200' => 'bna', 'A09p22930' => 'bna', 'Aa31LG2G13020' => 'aar', 'Aa31LG6G260' => 'aar', 'Aa31sc89G130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3349' => 'aag', 'Actinidia02183' => 'ach', 'Actinidia10852' => 'ach', 'Actinidia12142' => 'ach', 'Actinidia12643' => 'ach', 'Actinidia18351' => 'ach', 'Actinidia21634' => 'ach', 'Actinidia23780' => 'ach', 'Actinidia25896' => 'ach', 'Actinidia27543' => 'ach', 'Actinidia31503' => 'ach', 'Actinidia33510' => 'ach', 'Ah.05g177950' => 'amhyb', 'Ah.12g054140' => 'amhyb', 'Ah.12g054150' => 'amhyb', 'AL7G37100' => 'aly', 'AL7G37810' => 'aly', 'AL8G10820' => 'aly', 'Aqoxy3G02708' => 'aox', 'Aqoxy7G01250' => 'aox', 'arahy.Tifrunner.gnm1.ann1.180UYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L4YH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LE7D6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HL8AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7EL2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0G6H5' => 'arhy', 'AT4G16830' => 'ath', 'AT4G17520' => 'ath', 'AT5G47210' => 'ath', 'ATR0057G051' => 'atr', 'ATR0561G146' => 'atr', 'ATR0705G140' => 'atr', 'Atru.chr5.120' => 'acertr', 'Atru.chr9.1239' => 'acertr', 'AUR62007145' => 'cqu', 'AUR62013759' => 'cqu', 'AUR62018866' => 'cqu', 'AUR62023395' => 'cqu', 'BcaB04g18394' => 'bca', 'BcaB04g18425' => 'bca', 'BcaB07g30786' => 'bca', 'BcaC01g00266' => 'bca', 'BcaC02g09824' => 'bca', 'BcaC02g10806' => 'bca', 'BcaC03g16950' => 'bca', 'BcaC04g19353' => 'bca', 'BcaC04g21639' => 'bca', 'BcaC06g31406' => 'bca', 'BcaC06g33561' => 'bca', 'BcaC06g33563' => 'bca', 'BcaC06g34275' => 'bca', 'BcaC06g35280' => 'bca', 'BcaC07g38027' => 'bca', 'BcaC07g38085' => 'bca', 'BcaC07g42174' => 'bca', 'BcaC08g44282' => 'bca', 'BcaC09g50427' => 'bca', 'BcaC09g51634' => 'bca', 'BcaNung00084' => 'bca', 'BcaNung00142' => 'bca', 'BcaNung03458' => 'bca', 'BolC1t01082H' => 'bol', 'BolC1t02249H' => 'bol', 'BolC1t02503H' => 'bol', 'BolC1t02558H' => 'bol', 'BolC2t08027H' => 'bol', 'BolC2t10889H' => 'bol', 'BolC3t17215H' => 'bol', 'BolC3t20828H' => 'bol', 'BolC4t23994H' => 'bol', 'BolC4t25183H' => 'bol', 'BolC5t29725H' => 'bol', 'BolC5t32053H' => 'bol', 'BolC5t32068H' => 'bol', 'BolC6t35521H' => 'bol', 'BolC7t41249H' => 'bol', 'BolC7t42289H' => 'bol', 'BolC7t42351H' => 'bol', 'BolC7t43634H' => 'bol', 'BolC7t45390H' => 'bol', 'BolC8t48417H' => 'bol', 'BolC8t48418H' => 'bol', 'BolC8t48499H' => 'bol', 'BolC9t55814H' => 'bol', 'BolC9t59514H' => 'bol', 'BraA01t00902Z' => 'bra', 'BraA01t01966Z' => 'bra', 'BraA02t08106Z' => 'bra', 'BraA03t14139Z' => 'bra', 'BraA06t27389Z' => 'bra', 'BraA08t33265Z' => 'bra', 'BraA08t33302Z' => 'bra', 'BraA09t37894Z' => 'bra', 'C01p11170' => 'bna', 'C01p25530' => 'bna', 'C01p26140' => 'bna', 'C02p18860' => 'bna', 'C02p48560' => 'bna', 'C03p61440' => 'bna', 'C04p24940' => 'bna', 'C04p36170' => 'bna', 'C05p09840' => 'bna', 'C05p33270' => 'bna', 'C05p33450' => 'bna', 'C06p11470' => 'bna', 'C06p17000' => 'bna', 'C06p24330' => 'bna', 'C07p08360' => 'bna', 'C07p17830' => 'bna', 'C07p18400' => 'bna', 'C07p30910' => 'bna', 'C07p48820' => 'bna', 'C08p52330' => 'bna', 'C09p29510' => 'bna', 'CAN.G1497.15' => 'can', 'CAN.G62.10' => 'can', 'CAN.G761.26' => 'can', 'CAN.G845.17' => 'can', 'CANSAT01G0982' => 'cansat', 'CANSAT21G2599' => 'cansat', 'CANSAT25G2969' => 'cansat', 'CARHR174150' => 'chi', 'CARHR223450' => 'chi', 'CARHR224220' => 'chi', 'Carub.0007s2387' => 'cru', 'Carub.0007s2451' => 'cru', 'Carub.0008s0053' => 'cru', 'Ca_08064_v3' => 'car', 'Ca_25800_v3' => 'car', 'CBR_g20411' => 'cbr', 'Cc00_g26000' => 'ccan', 'Cc08_g11620' => 'ccan', 'CDE02G0684' => 'cde', 'CDE05G1379' => 'cde', 'CDE06G0510' => 'cde', 'CDE06G1167' => 'cde', 'CDE06G1858' => 'cde', 'CDE06G2514' => 'cde', 'CDE11G0377' => 'cde', 'Cfa011064' => 'cfa', 'Cfa012663' => 'cfa', 'Ciclev10020747m.g' => 'ccl', 'CiPaw.12G048100' => 'cil', 'CiPaw.13G025800' => 'cil', 'CiPaw.14G020000' => 'cil', 'CiPaw.14G041200' => 'cil', 'ClCG06G002440' => 'cla', 'ClCG09G012870' => 'cla', 'COL.COLO4_10016' => 'col', 'COL.COLO4_12401' => 'col', 'Cpa.g.c46241' => 'cpa', 'Cpa.g.sc22.60' => 'cpa', 'Cpa.g.sc672.2' => 'cpa', 'Cre09.g393358' => 'cre', 'CsaV3_3G049990' => 'csa', 'CsaV3_6G008690' => 'csa', 'CsaV3_6G008700' => 'csa', 'CSS0000873' => 'camsi', 'CSS0006185' => 'camsi', 'CSS0018232' => 'camsi', 'CSS0024114' => 'camsi', 'CSS0038516' => 'camsi', 'CSS0045240' => 'camsi', 'CSS0045630' => 'camsi', 'DCAR_000646' => 'dca', 'DCAR_004601' => 'dca', 'DCAR_016119' => 'dca', 'DCAR_025063' => 'dca', 'DCAR_029471' => 'dca', 'Dinv21687' => 'din', 'Dinv28852' => 'din', 'Dinv43611' => 'din', 'Dinv44058' => 'din', 'Duzib068G1311' => 'dzi', 'Duzib084G0208' => 'dzi', 'Duzib138G1049' => 'dzi', 'Duzib205G0586' => 'dzi', 'Duzib205G0990' => 'dzi', 'Duzib268G0869' => 'dzi', 'ECA233G0654' => 'eca', 'ECA236G1942' => 'eca', 'ECA236G2353' => 'eca', 'ECA240G0458' => 'eca', 'EL10Ac1g00747' => 'bvu', 'EL10Ac5g12298' => 'bvu', 'Eucgr.D02118' => 'egr', 'FAN01G0869' => 'fan', 'FAN03G2297' => 'fan', 'FAN04G2274' => 'fan', 'FAN06G0752' => 'fan', 'FAN06G2226' => 'fan', 'FAN08G3266' => 'fan', 'FAN10G2227' => 'fan', 'FAN10G3725' => 'fan', 'FAN13G1753' => 'fan', 'FAN18G3763' => 'fan', 'FvH4_5g20020' => 'fve', 'FvH4_7g10280' => 'fve', 'Glyma.03G110300' => 'gma', 'Glyma.07G114600' => 'gma', 'Glyma.09G243200' => 'gma', 'Glyma.18G251400' => 'gma', 'Glyma.18G257400' => 'gma', 'Glyma.20G246700' => 'gma', 'Gohir.A08G029201' => 'ghi', 'Gohir.A08G138700' => 'ghi', 'Gohir.A08G138900' => 'ghi', 'Gohir.A08G166200' => 'ghi', 'Gohir.A09G196800' => 'ghi', 'Gohir.D08G039900' => 'ghi', 'Gohir.D08G160000' => 'ghi', 'Gohir.D08G160100' => 'ghi', 'Gohir.D08G185100' => 'ghi', 'Gohir.D09G191400' => 'ghi', 'Gorai.004G038700' => 'gra', 'Gorai.004G166200' => 'gra', 'Gorai.004G166300' => 'gra', 'Gorai.004G194400' => 'gra', 'Gorai.006G214200' => 'gra', 'GSVIVG01002125001' => 'vvi', 'GSVIVG01018290001' => 'vvi', 'HanXRQChr03g0092961' => 'han', 'HanXRQChr04g0106031' => 'han', 'HanXRQChr06g0168331' => 'han', 'HanXRQChr10g0290861' => 'han', 'HanXRQChr10g0305481' => 'han', 'HanXRQChr13g0423741' => 'han', 'HanXRQChr16g0510681' => 'han', 'HanXRQChr16g0530721' => 'han', 'Haze_02853' => 'cav', 'Haze_07983' => 'cav', 'Hma1.2p1_0535F.1_g173810' => 'hma', 'Hma1.2p1_2756F.1_g328020' => 'hma', 'HPP92_000442' => 'vpl', 'HPP92_003948' => 'vpl', 'HPP92_023976' => 'vpl', 'Hund11332' => 'sun', 'Hund14503' => 'sun', 'Hund17103' => 'sun', 'Hund27411' => 'sun', 'Lalb_Chr01g0021591' => 'lal', 'Lalb_Chr03g0040421' => 'lal', 'Lalb_Chr07g0195391' => 'lal', 'Lalb_Chr12g0210561' => 'lal', 'Lalb_Chr13g0290621' => 'lal', 'Lalb_Chr19g0126511' => 'lal', 'Lj1g0023152' => 'lja', 'Lj2C226G6' => 'lonja', 'Lj2g0007100' => 'lja', 'Lj3g0008598' => 'lja', 'Lj5g0008499' => 'lja', 'Lj7A548T43' => 'lonja', 'Lj7P558T34' => 'lonja', 'Lj8A275G67' => 'lonja', 'Lj9A555T37' => 'lonja', 'Lsat_1_v5_gn_3_126861' => 'lsa', 'Lsat_1_v5_gn_6_68740' => 'lsa', 'Lsat_1_v5_gn_6_94060' => 'lsa', 'Lsat_1_v5_gn_7_12161' => 'lsa', 'Lsat_1_v5_gn_9_107900' => 'lsa', 'Manes.01G086200' => 'mes', 'Manes.01G257404' => 'mes', 'Manes.01G274200' => 'mes', 'Manes.02G043300' => 'mes', 'Manes.05G055400' => 'mes', 'Mapoly0044s0032' => 'mpo', 'Mapoly0161s0012' => 'mpo', 'Mapoly0172s0023' => 'mpo', 'MBI01_g02258_MAGBIO' => 'mbi', 'MBI04_g22922_MAGBIO' => 'mbi', 'MBI07_g04745_MAGBIO' => 'mbi', 'MBI07_g09666_MAGBIO' => 'mbi', 'MD02G1213500' => 'mdo', 'MD04G1050100' => 'mdo', 'MD06G1049800' => 'mdo', 'MD07G1109500' => 'mdo', 'Medtr7g081660' => 'mtr', 'Medtr8g006960' => 'mtr', 'Medtr8g007425' => 'mtr', 'MELO3C003317.2' => 'cme', 'MELO3C022289.2' => 'cme', 'MELO3C033858.2' => 'cme', 'Migut.A01034' => 'egut', 'Migut.A01037' => 'egut', 'Migut.B01530' => 'egut', 'MSTRG.12141' => 'ama', 'MSTRG.17125' => 'ama', 'MSTRG.20686' => 'ama', 'MSTRG.4933' => 'ama', 'Nitab4.5_0000185g0150' => 'nta', 'Nitab4.5_0000500g0030' => 'nta', 'Nitab4.5_0000506g0020' => 'nta', 'Nitab4.5_0000920g0060' => 'nta', 'Nitab4.5_0002685g0040' => 'nta', 'Nitab4.5_0003456g0010' => 'nta', 'Nitab4.5_0006594g0050' => 'nta', 'Nitab4.5_0009955g0030' => 'nta', 'Nn2g14485' => 'nnu', 'Nn6g33814' => 'nnu', 'Oeu002321.1' => 'oeu', 'Oeu011237.1' => 'oeu', 'Oeu018041.1' => 'oeu', 'Oeu018042.1' => 'oeu', 'Oeu020083.3' => 'oeu', 'Oeu031157.1' => 'oeu', 'Oeu031414.1' => 'oeu', 'Oeu037449.2' => 'oeu', 'Oeu040197.1' => 'oeu', 'Oeu040683.3' => 'oeu', 'Oeu045667.1' => 'oeu', 'Oeu054073.1' => 'oeu', 'Os01g0603000' => 'osa', 'Os01g0721900' => 'osa', 'Os03g0845300' => 'osa', 'Os05g0533100' => 'osa', 'Os05g0589600' => 'osa', 'Peaxi162Scf00102g00839' => 'pax', 'Peaxi162Scf00190g01013' => 'pax', 'Peaxi162Scf00446g00611' => 'pax', 'Peaxi162Scf00475g00416' => 'pax', 'PGR031G0446' => 'pgr', 'PGR042G1184' => 'pgr', 'PGSC0003DMG400020488' => 'stu', 'PGSC0003DMG400025998' => 'stu', 'Phvul.007G003500' => 'pvu', 'Phvul.008G047300' => 'pvu', 'Phvul.010G049300' => 'pvu', 'Potri.001G153000' => 'ptr', 'Potri.002G138300' => 'ptr', 'Potri.003G081600' => 'ptr', 'Potri.014G049300' => 'ptr', 'Pp3c1_6130' => 'ppa', 'Pp3c2_30530' => 'ppa', 'Pp3c2_30970' => 'ppa', 'Pp3c7_26560' => 'ppa', 'Prupe.2G132500' => 'ppe', 'Prupe.5G060200' => 'ppe', 'Psat3g099160' => 'psa', 'Psat4g224720' => 'psa', 'PSO017G2053' => 'pso', 'PSO063G0952' => 'pso', 'PSO063G2805' => 'pso', 'PSO063G4392' => 'pso', 'PSO675G3432' => 'pso', 'PSO675G5190' => 'pso', 'PSO717G0024' => 'pso', 'PSO782G3687' => 'pso', 'PSO832G1381' => 'pso', 'QL04p030014' => 'qlo', 'QL09p049052' => 'qlo', 'QL12p009567' => 'qlo', 'RcHm_v2.0_Chr1g0348031' => 'rch', 'RcHm_v2.0_Chr7g0204831' => 'rch', 'RcHm_v2.0_Chr7g0204851' => 'rch', 'Rhsim01G0141100' => 'rsi', 'Rhsim07G0036400' => 'rsi', 'Rhsim07G0117800' => 'rsi', 'Sabra01G0122800' => 'sbr', 'Sabra02G0107900' => 'sbr', 'Sabra03G0052600' => 'sbr', 'Sabra14G0035100' => 'sbr', 'SalBow5G0459' => 'sbo', 'SalBow5G2230' => 'sbo', 'Sc01g0008170' => 'sci', 'Sc05g0001830' => 'sci', 'Sc22g0001090' => 'sci', 'Sc26g0001630' => 'sci', 'Sed0000430' => 'sed', 'Sed0001913' => 'sed', 'Sed0019221' => 'sed', 'Sed0021627' => 'sed', 'SEGI_07756' => 'sgi', 'SEGI_09917' => 'sgi', 'SEGI_34546' => 'sgi', 'SGA_v2.0_scaffold104G30211' => 'sas', 'SGA_v2.0_scaffold116G32282' => 'sas', 'SGA_v2.0_scaffold127G34016' => 'sas', 'SGA_v2.0_scaffold1333G53914' => 'sas', 'SGA_v2.0_scaffold199G41235' => 'sas', 'SGA_v2.0_scaffold4G02391' => 'sas', 'SGA_v2.0_scaffold51G18896' => 'sas', 'SGA_v2.0_scaffold52G19232' => 'sas', 'SGA_v2.0_scaffold902G53710' => 'sas', 'SMO203G0040' => 'smo', 'SMO281G0002' => 'smo', 'Solyc01g090190.3' => 'sly', 'Solyc08g007220.3' => 'sly', 'Sopen01g035980' => 'spe', 'Sopen08g003170' => 'spe', 'Sopen08g003180' => 'spe', 'Sp2g12010' => 'spa', 'Sp7g16640' => 'spa', 'Sp7g17250' => 'spa', 'TAR374G1144' => 'tar', 'TAR375G0305' => 'tar', 'TAR624G0231' => 'tar', 'TAR629G2824' => 'tar', 'TAR636G2146' => 'tar', 'THA.LOC104807918' => 'tha', 'THA.LOC104807919' => 'tha', 'THA.LOC104807920' => 'tha', 'THA.LOC104814464' => 'tha', 'Thecc.01G395600' => 'tca', 'Thecc.03G244100' => 'tca', 'Thhalv10000938m.g' => 'esa', 'Thhalv10025512m.g' => 'esa', 'Thhalv10025552m.g' => 'esa', 'TPR.G28792' => 'tpr', 'TPR.G35190' => 'tpr', 'TWI14G1246' => 'twi', 'TWI23G0570' => 'twi', 'TWI36G0339' => 'twi', 'TWI59G1071' => 'twi', 'TWI60G0908' => 'twi', 'TWI81G0055' => 'twi', 'unitig_750.g28411' => 'ugi', 'vmacro00034' => 'vma', 'vmacro13501' => 'vma', 'vmacro14134' => 'vma', 'vmacro21064' => 'vma', 'VMungo0331G1076' => 'vmu', 'VMungo0720G1714' => 'vmu', 'VMungo1215G1200' => 'vmu', 'VMungo1383G0355' => 'vmu', 'Zm00001eb136290' => 'zma', 'Zm00001eb154690' => 'zma', 'Zm00001eb154710' => 'zma', 'Zm00001eb287180' => 'zma', 'Zm00001eb345200' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001429' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001429' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001429' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001429' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001429', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '440', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p09600' => 'bna', 'A01p20360' => 'bna', 'A02p30950' => 'bna', 'A03p50500' => 'bna', 'A06p45200' => 'bna', 'A08p12770' => 'bna', 'A08p13200' => 'bna', 'A09p22930' => 'bna', 'Aa31LG2G13020' => 'aar', 'Aa31LG6G260' => 'aar', 'Aa31sc89G130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3349' => 'aag', 'Actinidia02183' => 'ach', 'Actinidia10852' => 'ach', 'Actinidia12142' => 'ach', 'Actinidia12643' => 'ach', 'Actinidia18351' => 'ach', 'Actinidia21634' => 'ach', 'Actinidia23780' => 'ach', 'Actinidia25896' => 'ach', 'Actinidia27543' => 'ach', 'Actinidia31503' => 'ach', 'Actinidia33510' => 'ach', 'Ah.05g177950' => 'amhyb', 'Ah.12g054140' => 'amhyb', 'Ah.12g054150' => 'amhyb', 'AL7G37100' => 'aly', 'AL7G37810' => 'aly', 'AL8G10820' => 'aly', 'Aqoxy3G02708' => 'aox', 'Aqoxy7G01250' => 'aox', 'arahy.Tifrunner.gnm1.ann1.180UYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L4YH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LE7D6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HL8AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7EL2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0G6H5' => 'arhy', 'AT4G16830' => 'ath', 'AT4G17520' => 'ath', 'AT5G47210' => 'ath', 'ATR0057G051' => 'atr', 'ATR0561G146' => 'atr', 'ATR0705G140' => 'atr', 'Atru.chr5.120' => 'acertr', 'Atru.chr9.1239' => 'acertr', 'AUR62007145' => 'cqu', 'AUR62013759' => 'cqu', 'AUR62018866' => 'cqu', 'AUR62023395' => 'cqu', 'BcaB04g18394' => 'bca', 'BcaB04g18425' => 'bca', 'BcaB07g30786' => 'bca', 'BcaC01g00266' => 'bca', 'BcaC02g09824' => 'bca', 'BcaC02g10806' => 'bca', 'BcaC03g16950' => 'bca', 'BcaC04g19353' => 'bca', 'BcaC04g21639' => 'bca', 'BcaC06g31406' => 'bca', 'BcaC06g33561' => 'bca', 'BcaC06g33563' => 'bca', 'BcaC06g34275' => 'bca', 'BcaC06g35280' => 'bca', 'BcaC07g38027' => 'bca', 'BcaC07g38085' => 'bca', 'BcaC07g42174' => 'bca', 'BcaC08g44282' => 'bca', 'BcaC09g50427' => 'bca', 'BcaC09g51634' => 'bca', 'BcaNung00084' => 'bca', 'BcaNung00142' => 'bca', 'BcaNung03458' => 'bca', 'BolC1t01082H' => 'bol', 'BolC1t02249H' => 'bol', 'BolC1t02503H' => 'bol', 'BolC1t02558H' => 'bol', 'BolC2t08027H' => 'bol', 'BolC2t10889H' => 'bol', 'BolC3t17215H' => 'bol', 'BolC3t20828H' => 'bol', 'BolC4t23994H' => 'bol', 'BolC4t25183H' => 'bol', 'BolC5t29725H' => 'bol', 'BolC5t32053H' => 'bol', 'BolC5t32068H' => 'bol', 'BolC6t35521H' => 'bol', 'BolC7t41249H' => 'bol', 'BolC7t42289H' => 'bol', 'BolC7t42351H' => 'bol', 'BolC7t43634H' => 'bol', 'BolC7t45390H' => 'bol', 'BolC8t48417H' => 'bol', 'BolC8t48418H' => 'bol', 'BolC8t48499H' => 'bol', 'BolC9t55814H' => 'bol', 'BolC9t59514H' => 'bol', 'BraA01t00902Z' => 'bra', 'BraA01t01966Z' => 'bra', 'BraA02t08106Z' => 'bra', 'BraA03t14139Z' => 'bra', 'BraA06t27389Z' => 'bra', 'BraA08t33265Z' => 'bra', 'BraA08t33302Z' => 'bra', 'BraA09t37894Z' => 'bra', 'C01p11170' => 'bna', 'C01p25530' => 'bna', 'C01p26140' => 'bna', 'C02p18860' => 'bna', 'C02p48560' => 'bna', 'C03p61440' => 'bna', 'C04p24940' => 'bna', 'C04p36170' => 'bna', 'C05p09840' => 'bna', 'C05p33270' => 'bna', 'C05p33450' => 'bna', 'C06p11470' => 'bna', 'C06p17000' => 'bna', 'C06p24330' => 'bna', 'C07p08360' => 'bna', 'C07p17830' => 'bna', 'C07p18400' => 'bna', 'C07p30910' => 'bna', 'C07p48820' => 'bna', 'C08p52330' => 'bna', 'C09p29510' => 'bna', 'CAN.G1497.15' => 'can', 'CAN.G62.10' => 'can', 'CAN.G761.26' => 'can', 'CAN.G845.17' => 'can', 'CANSAT01G0982' => 'cansat', 'CANSAT21G2599' => 'cansat', 'CANSAT25G2969' => 'cansat', 'CARHR174150' => 'chi', 'CARHR223450' => 'chi', 'CARHR224220' => 'chi', 'Carub.0007s2387' => 'cru', 'Carub.0007s2451' => 'cru', 'Carub.0008s0053' => 'cru', 'Ca_08064_v3' => 'car', 'Ca_25800_v3' => 'car', 'CBR_g20411' => 'cbr', 'Cc00_g26000' => 'ccan', 'Cc08_g11620' => 'ccan', 'CDE02G0684' => 'cde', 'CDE05G1379' => 'cde', 'CDE06G0510' => 'cde', 'CDE06G1167' => 'cde', 'CDE06G1858' => 'cde', 'CDE06G2514' => 'cde', 'CDE11G0377' => 'cde', 'Cfa011064' => 'cfa', 'Cfa012663' => 'cfa', 'Ciclev10020747m.g' => 'ccl', 'CiPaw.12G048100' => 'cil', 'CiPaw.13G025800' => 'cil', 'CiPaw.14G020000' => 'cil', 'CiPaw.14G041200' => 'cil', 'ClCG06G002440' => 'cla', 'ClCG09G012870' => 'cla', 'COL.COLO4_10016' => 'col', 'COL.COLO4_12401' => 'col', 'Cpa.g.c46241' => 'cpa', 'Cpa.g.sc22.60' => 'cpa', 'Cpa.g.sc672.2' => 'cpa', 'Cre09.g393358' => 'cre', 'CsaV3_3G049990' => 'csa', 'CsaV3_6G008690' => 'csa', 'CsaV3_6G008700' => 'csa', 'CSS0000873' => 'camsi', 'CSS0006185' => 'camsi', 'CSS0018232' => 'camsi', 'CSS0024114' => 'camsi', 'CSS0038516' => 'camsi', 'CSS0045240' => 'camsi', 'CSS0045630' => 'camsi', 'DCAR_000646' => 'dca', 'DCAR_004601' => 'dca', 'DCAR_016119' => 'dca', 'DCAR_025063' => 'dca', 'DCAR_029471' => 'dca', 'Dinv21687' => 'din', 'Dinv28852' => 'din', 'Dinv43611' => 'din', 'Dinv44058' => 'din', 'Duzib068G1311' => 'dzi', 'Duzib084G0208' => 'dzi', 'Duzib138G1049' => 'dzi', 'Duzib205G0586' => 'dzi', 'Duzib205G0990' => 'dzi', 'Duzib268G0869' => 'dzi', 'ECA233G0654' => 'eca', 'ECA236G1942' => 'eca', 'ECA236G2353' => 'eca', 'ECA240G0458' => 'eca', 'EL10Ac1g00747' => 'bvu', 'EL10Ac5g12298' => 'bvu', 'Eucgr.D02118' => 'egr', 'FAN01G0869' => 'fan', 'FAN03G2297' => 'fan', 'FAN04G2274' => 'fan', 'FAN06G0752' => 'fan', 'FAN06G2226' => 'fan', 'FAN08G3266' => 'fan', 'FAN10G2227' => 'fan', 'FAN10G3725' => 'fan', 'FAN13G1753' => 'fan', 'FAN18G3763' => 'fan', 'FvH4_5g20020' => 'fve', 'FvH4_7g10280' => 'fve', 'Glyma.03G110300' => 'gma', 'Glyma.07G114600' => 'gma', 'Glyma.09G243200' => 'gma', 'Glyma.18G251400' => 'gma', 'Glyma.18G257400' => 'gma', 'Glyma.20G246700' => 'gma', 'Gohir.A08G029201' => 'ghi', 'Gohir.A08G138700' => 'ghi', 'Gohir.A08G138900' => 'ghi', 'Gohir.A08G166200' => 'ghi', 'Gohir.A09G196800' => 'ghi', 'Gohir.D08G039900' => 'ghi', 'Gohir.D08G160000' => 'ghi', 'Gohir.D08G160100' => 'ghi', 'Gohir.D08G185100' => 'ghi', 'Gohir.D09G191400' => 'ghi', 'Gorai.004G038700' => 'gra', 'Gorai.004G166200' => 'gra', 'Gorai.004G166300' => 'gra', 'Gorai.004G194400' => 'gra', 'Gorai.006G214200' => 'gra', 'GSVIVG01002125001' => 'vvi', 'GSVIVG01018290001' => 'vvi', 'HanXRQChr03g0092961' => 'han', 'HanXRQChr04g0106031' => 'han', 'HanXRQChr06g0168331' => 'han', 'HanXRQChr10g0290861' => 'han', 'HanXRQChr10g0305481' => 'han', 'HanXRQChr13g0423741' => 'han', 'HanXRQChr16g0510681' => 'han', 'HanXRQChr16g0530721' => 'han', 'Haze_02853' => 'cav', 'Haze_07983' => 'cav', 'Hma1.2p1_0535F.1_g173810' => 'hma', 'Hma1.2p1_2756F.1_g328020' => 'hma', 'HPP92_000442' => 'vpl', 'HPP92_003948' => 'vpl', 'HPP92_023976' => 'vpl', 'Hund11332' => 'sun', 'Hund14503' => 'sun', 'Hund17103' => 'sun', 'Hund27411' => 'sun', 'Lalb_Chr01g0021591' => 'lal', 'Lalb_Chr03g0040421' => 'lal', 'Lalb_Chr07g0195391' => 'lal', 'Lalb_Chr12g0210561' => 'lal', 'Lalb_Chr13g0290621' => 'lal', 'Lalb_Chr19g0126511' => 'lal', 'Lj1g0023152' => 'lja', 'Lj2C226G6' => 'lonja', 'Lj2g0007100' => 'lja', 'Lj3g0008598' => 'lja', 'Lj5g0008499' => 'lja', 'Lj7A548T43' => 'lonja', 'Lj7P558T34' => 'lonja', 'Lj8A275G67' => 'lonja', 'Lj9A555T37' => 'lonja', 'Lsat_1_v5_gn_3_126861' => 'lsa', 'Lsat_1_v5_gn_6_68740' => 'lsa', 'Lsat_1_v5_gn_6_94060' => 'lsa', 'Lsat_1_v5_gn_7_12161' => 'lsa', 'Lsat_1_v5_gn_9_107900' => 'lsa', 'Manes.01G086200' => 'mes', 'Manes.01G257404' => 'mes', 'Manes.01G274200' => 'mes', 'Manes.02G043300' => 'mes', 'Manes.05G055400' => 'mes', 'Mapoly0044s0032' => 'mpo', 'Mapoly0161s0012' => 'mpo', 'Mapoly0172s0023' => 'mpo', 'MBI01_g02258_MAGBIO' => 'mbi', 'MBI04_g22922_MAGBIO' => 'mbi', 'MBI07_g04745_MAGBIO' => 'mbi', 'MBI07_g09666_MAGBIO' => 'mbi', 'MD02G1213500' => 'mdo', 'MD04G1050100' => 'mdo', 'MD06G1049800' => 'mdo', 'MD07G1109500' => 'mdo', 'Medtr7g081660' => 'mtr', 'Medtr8g006960' => 'mtr', 'Medtr8g007425' => 'mtr', 'MELO3C003317.2' => 'cme', 'MELO3C022289.2' => 'cme', 'MELO3C033858.2' => 'cme', 'Migut.A01034' => 'egut', 'Migut.A01037' => 'egut', 'Migut.B01530' => 'egut', 'MSTRG.12141' => 'ama', 'MSTRG.17125' => 'ama', 'MSTRG.20686' => 'ama', 'MSTRG.4933' => 'ama', 'Nitab4.5_0000185g0150' => 'nta', 'Nitab4.5_0000500g0030' => 'nta', 'Nitab4.5_0000506g0020' => 'nta', 'Nitab4.5_0000920g0060' => 'nta', 'Nitab4.5_0002685g0040' => 'nta', 'Nitab4.5_0003456g0010' => 'nta', 'Nitab4.5_0006594g0050' => 'nta', 'Nitab4.5_0009955g0030' => 'nta', 'Nn2g14485' => 'nnu', 'Nn6g33814' => 'nnu', 'Oeu002321.1' => 'oeu', 'Oeu011237.1' => 'oeu', 'Oeu018041.1' => 'oeu', 'Oeu018042.1' => 'oeu', 'Oeu020083.3' => 'oeu', 'Oeu031157.1' => 'oeu', 'Oeu031414.1' => 'oeu', 'Oeu037449.2' => 'oeu', 'Oeu040197.1' => 'oeu', 'Oeu040683.3' => 'oeu', 'Oeu045667.1' => 'oeu', 'Oeu054073.1' => 'oeu', 'Os01g0603000' => 'osa', 'Os01g0721900' => 'osa', 'Os03g0845300' => 'osa', 'Os05g0533100' => 'osa', 'Os05g0589600' => 'osa', 'Peaxi162Scf00102g00839' => 'pax', 'Peaxi162Scf00190g01013' => 'pax', 'Peaxi162Scf00446g00611' => 'pax', 'Peaxi162Scf00475g00416' => 'pax', 'PGR031G0446' => 'pgr', 'PGR042G1184' => 'pgr', 'PGSC0003DMG400020488' => 'stu', 'PGSC0003DMG400025998' => 'stu', 'Phvul.007G003500' => 'pvu', 'Phvul.008G047300' => 'pvu', 'Phvul.010G049300' => 'pvu', 'Potri.001G153000' => 'ptr', 'Potri.002G138300' => 'ptr', 'Potri.003G081600' => 'ptr', 'Potri.014G049300' => 'ptr', 'Pp3c1_6130' => 'ppa', 'Pp3c2_30530' => 'ppa', 'Pp3c2_30970' => 'ppa', 'Pp3c7_26560' => 'ppa', 'Prupe.2G132500' => 'ppe', 'Prupe.5G060200' => 'ppe', 'Psat3g099160' => 'psa', 'Psat4g224720' => 'psa', 'PSO017G2053' => 'pso', 'PSO063G0952' => 'pso', 'PSO063G2805' => 'pso', 'PSO063G4392' => 'pso', 'PSO675G3432' => 'pso', 'PSO675G5190' => 'pso', 'PSO717G0024' => 'pso', 'PSO782G3687' => 'pso', 'PSO832G1381' => 'pso', 'QL04p030014' => 'qlo', 'QL09p049052' => 'qlo', 'QL12p009567' => 'qlo', 'RcHm_v2.0_Chr1g0348031' => 'rch', 'RcHm_v2.0_Chr7g0204831' => 'rch', 'RcHm_v2.0_Chr7g0204851' => 'rch', 'Rhsim01G0141100' => 'rsi', 'Rhsim07G0036400' => 'rsi', 'Rhsim07G0117800' => 'rsi', 'Sabra01G0122800' => 'sbr', 'Sabra02G0107900' => 'sbr', 'Sabra03G0052600' => 'sbr', 'Sabra14G0035100' => 'sbr', 'SalBow5G0459' => 'sbo', 'SalBow5G2230' => 'sbo', 'Sc01g0008170' => 'sci', 'Sc05g0001830' => 'sci', 'Sc22g0001090' => 'sci', 'Sc26g0001630' => 'sci', 'Sed0000430' => 'sed', 'Sed0001913' => 'sed', 'Sed0019221' => 'sed', 'Sed0021627' => 'sed', 'SEGI_07756' => 'sgi', 'SEGI_09917' => 'sgi', 'SEGI_34546' => 'sgi', 'SGA_v2.0_scaffold104G30211' => 'sas', 'SGA_v2.0_scaffold116G32282' => 'sas', 'SGA_v2.0_scaffold127G34016' => 'sas', 'SGA_v2.0_scaffold1333G53914' => 'sas', 'SGA_v2.0_scaffold199G41235' => 'sas', 'SGA_v2.0_scaffold4G02391' => 'sas', 'SGA_v2.0_scaffold51G18896' => 'sas', 'SGA_v2.0_scaffold52G19232' => 'sas', 'SGA_v2.0_scaffold902G53710' => 'sas', 'SMO203G0040' => 'smo', 'SMO281G0002' => 'smo', 'Solyc01g090190.3' => 'sly', 'Solyc08g007220.3' => 'sly', 'Sopen01g035980' => 'spe', 'Sopen08g003170' => 'spe', 'Sopen08g003180' => 'spe', 'Sp2g12010' => 'spa', 'Sp7g16640' => 'spa', 'Sp7g17250' => 'spa', 'TAR374G1144' => 'tar', 'TAR375G0305' => 'tar', 'TAR624G0231' => 'tar', 'TAR629G2824' => 'tar', 'TAR636G2146' => 'tar', 'THA.LOC104807918' => 'tha', 'THA.LOC104807919' => 'tha', 'THA.LOC104807920' => 'tha', 'THA.LOC104814464' => 'tha', 'Thecc.01G395600' => 'tca', 'Thecc.03G244100' => 'tca', 'Thhalv10000938m.g' => 'esa', 'Thhalv10025512m.g' => 'esa', 'Thhalv10025552m.g' => 'esa', 'TPR.G28792' => 'tpr', 'TPR.G35190' => 'tpr', 'TWI14G1246' => 'twi', 'TWI23G0570' => 'twi', 'TWI36G0339' => 'twi', 'TWI59G1071' => 'twi', 'TWI60G0908' => 'twi', 'TWI81G0055' => 'twi', 'unitig_750.g28411' => 'ugi', 'vmacro00034' => 'vma', 'vmacro13501' => 'vma', 'vmacro14134' => 'vma', 'vmacro21064' => 'vma', 'VMungo0331G1076' => 'vmu', 'VMungo0720G1714' => 'vmu', 'VMungo1215G1200' => 'vmu', 'VMungo1383G0355' => 'vmu', 'Zm00001eb136290' => 'zma', 'Zm00001eb154690' => 'zma', 'Zm00001eb154710' => 'zma', 'Zm00001eb287180' => 'zma', 'Zm00001eb345200' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001429', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001429' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001429', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '440', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001429' ) ), 'genes' => array( 'A01p09600' => 'bna', 'A01p20360' => 'bna', 'A02p30950' => 'bna', 'A03p50500' => 'bna', 'A06p45200' => 'bna', 'A08p12770' => 'bna', 'A08p13200' => 'bna', 'A09p22930' => 'bna', 'Aa31LG2G13020' => 'aar', 'Aa31LG6G260' => 'aar', 'Aa31sc89G130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3349' => 'aag', 'Actinidia02183' => 'ach', 'Actinidia10852' => 'ach', 'Actinidia12142' => 'ach', 'Actinidia12643' => 'ach', 'Actinidia18351' => 'ach', 'Actinidia21634' => 'ach', 'Actinidia23780' => 'ach', 'Actinidia25896' => 'ach', 'Actinidia27543' => 'ach', 'Actinidia31503' => 'ach', 'Actinidia33510' => 'ach', 'Ah.05g177950' => 'amhyb', 'Ah.12g054140' => 'amhyb', 'Ah.12g054150' => 'amhyb', 'AL7G37100' => 'aly', 'AL7G37810' => 'aly', 'AL8G10820' => 'aly', 'Aqoxy3G02708' => 'aox', 'Aqoxy7G01250' => 'aox', 'arahy.Tifrunner.gnm1.ann1.180UYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L4YH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LE7D6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HL8AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7EL2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0G6H5' => 'arhy', 'AT4G16830' => 'ath', 'AT4G17520' => 'ath', 'AT5G47210' => 'ath', 'ATR0057G051' => 'atr', 'ATR0561G146' => 'atr', 'ATR0705G140' => 'atr', 'Atru.chr5.120' => 'acertr', 'Atru.chr9.1239' => 'acertr', 'AUR62007145' => 'cqu', 'AUR62013759' => 'cqu', 'AUR62018866' => 'cqu', 'AUR62023395' => 'cqu', 'BcaB04g18394' => 'bca', 'BcaB04g18425' => 'bca', 'BcaB07g30786' => 'bca', 'BcaC01g00266' => 'bca', 'BcaC02g09824' => 'bca', 'BcaC02g10806' => 'bca', 'BcaC03g16950' => 'bca', 'BcaC04g19353' => 'bca', 'BcaC04g21639' => 'bca', 'BcaC06g31406' => 'bca', 'BcaC06g33561' => 'bca', 'BcaC06g33563' => 'bca', 'BcaC06g34275' => 'bca', 'BcaC06g35280' => 'bca', 'BcaC07g38027' => 'bca', 'BcaC07g38085' => 'bca', 'BcaC07g42174' => 'bca', 'BcaC08g44282' => 'bca', 'BcaC09g50427' => 'bca', 'BcaC09g51634' => 'bca', 'BcaNung00084' => 'bca', 'BcaNung00142' => 'bca', 'BcaNung03458' => 'bca', 'BolC1t01082H' => 'bol', 'BolC1t02249H' => 'bol', 'BolC1t02503H' => 'bol', 'BolC1t02558H' => 'bol', 'BolC2t08027H' => 'bol', 'BolC2t10889H' => 'bol', 'BolC3t17215H' => 'bol', 'BolC3t20828H' => 'bol', 'BolC4t23994H' => 'bol', 'BolC4t25183H' => 'bol', 'BolC5t29725H' => 'bol', 'BolC5t32053H' => 'bol', 'BolC5t32068H' => 'bol', 'BolC6t35521H' => 'bol', 'BolC7t41249H' => 'bol', 'BolC7t42289H' => 'bol', 'BolC7t42351H' => 'bol', 'BolC7t43634H' => 'bol', 'BolC7t45390H' => 'bol', 'BolC8t48417H' => 'bol', 'BolC8t48418H' => 'bol', 'BolC8t48499H' => 'bol', 'BolC9t55814H' => 'bol', 'BolC9t59514H' => 'bol', 'BraA01t00902Z' => 'bra', 'BraA01t01966Z' => 'bra', 'BraA02t08106Z' => 'bra', 'BraA03t14139Z' => 'bra', 'BraA06t27389Z' => 'bra', 'BraA08t33265Z' => 'bra', 'BraA08t33302Z' => 'bra', 'BraA09t37894Z' => 'bra', 'C01p11170' => 'bna', 'C01p25530' => 'bna', 'C01p26140' => 'bna', 'C02p18860' => 'bna', 'C02p48560' => 'bna', 'C03p61440' => 'bna', 'C04p24940' => 'bna', 'C04p36170' => 'bna', 'C05p09840' => 'bna', 'C05p33270' => 'bna', 'C05p33450' => 'bna', 'C06p11470' => 'bna', 'C06p17000' => 'bna', 'C06p24330' => 'bna', 'C07p08360' => 'bna', 'C07p17830' => 'bna', 'C07p18400' => 'bna', 'C07p30910' => 'bna', 'C07p48820' => 'bna', 'C08p52330' => 'bna', 'C09p29510' => 'bna', 'CAN.G1497.15' => 'can', 'CAN.G62.10' => 'can', 'CAN.G761.26' => 'can', 'CAN.G845.17' => 'can', 'CANSAT01G0982' => 'cansat', 'CANSAT21G2599' => 'cansat', 'CANSAT25G2969' => 'cansat', 'CARHR174150' => 'chi', 'CARHR223450' => 'chi', 'CARHR224220' => 'chi', 'Carub.0007s2387' => 'cru', 'Carub.0007s2451' => 'cru', 'Carub.0008s0053' => 'cru', 'Ca_08064_v3' => 'car', 'Ca_25800_v3' => 'car', 'CBR_g20411' => 'cbr', 'Cc00_g26000' => 'ccan', 'Cc08_g11620' => 'ccan', 'CDE02G0684' => 'cde', 'CDE05G1379' => 'cde', 'CDE06G0510' => 'cde', 'CDE06G1167' => 'cde', 'CDE06G1858' => 'cde', 'CDE06G2514' => 'cde', 'CDE11G0377' => 'cde', 'Cfa011064' => 'cfa', 'Cfa012663' => 'cfa', 'Ciclev10020747m.g' => 'ccl', 'CiPaw.12G048100' => 'cil', 'CiPaw.13G025800' => 'cil', 'CiPaw.14G020000' => 'cil', 'CiPaw.14G041200' => 'cil', 'ClCG06G002440' => 'cla', 'ClCG09G012870' => 'cla', 'COL.COLO4_10016' => 'col', 'COL.COLO4_12401' => 'col', 'Cpa.g.c46241' => 'cpa', 'Cpa.g.sc22.60' => 'cpa', 'Cpa.g.sc672.2' => 'cpa', 'Cre09.g393358' => 'cre', 'CsaV3_3G049990' => 'csa', 'CsaV3_6G008690' => 'csa', 'CsaV3_6G008700' => 'csa', 'CSS0000873' => 'camsi', 'CSS0006185' => 'camsi', 'CSS0018232' => 'camsi', 'CSS0024114' => 'camsi', 'CSS0038516' => 'camsi', 'CSS0045240' => 'camsi', 'CSS0045630' => 'camsi', 'DCAR_000646' => 'dca', 'DCAR_004601' => 'dca', 'DCAR_016119' => 'dca', 'DCAR_025063' => 'dca', 'DCAR_029471' => 'dca', 'Dinv21687' => 'din', 'Dinv28852' => 'din', 'Dinv43611' => 'din', 'Dinv44058' => 'din', 'Duzib068G1311' => 'dzi', 'Duzib084G0208' => 'dzi', 'Duzib138G1049' => 'dzi', 'Duzib205G0586' => 'dzi', 'Duzib205G0990' => 'dzi', 'Duzib268G0869' => 'dzi', 'ECA233G0654' => 'eca', 'ECA236G1942' => 'eca', 'ECA236G2353' => 'eca', 'ECA240G0458' => 'eca', 'EL10Ac1g00747' => 'bvu', 'EL10Ac5g12298' => 'bvu', 'Eucgr.D02118' => 'egr', 'FAN01G0869' => 'fan', 'FAN03G2297' => 'fan', 'FAN04G2274' => 'fan', 'FAN06G0752' => 'fan', 'FAN06G2226' => 'fan', 'FAN08G3266' => 'fan', 'FAN10G2227' => 'fan', 'FAN10G3725' => 'fan', 'FAN13G1753' => 'fan', 'FAN18G3763' => 'fan', 'FvH4_5g20020' => 'fve', 'FvH4_7g10280' => 'fve', 'Glyma.03G110300' => 'gma', 'Glyma.07G114600' => 'gma', 'Glyma.09G243200' => 'gma', 'Glyma.18G251400' => 'gma', 'Glyma.18G257400' => 'gma', 'Glyma.20G246700' => 'gma', 'Gohir.A08G029201' => 'ghi', 'Gohir.A08G138700' => 'ghi', 'Gohir.A08G138900' => 'ghi', 'Gohir.A08G166200' => 'ghi', 'Gohir.A09G196800' => 'ghi', 'Gohir.D08G039900' => 'ghi', 'Gohir.D08G160000' => 'ghi', 'Gohir.D08G160100' => 'ghi', 'Gohir.D08G185100' => 'ghi', 'Gohir.D09G191400' => 'ghi', 'Gorai.004G038700' => 'gra', 'Gorai.004G166200' => 'gra', 'Gorai.004G166300' => 'gra', 'Gorai.004G194400' => 'gra', 'Gorai.006G214200' => 'gra', 'GSVIVG01002125001' => 'vvi', 'GSVIVG01018290001' => 'vvi', 'HanXRQChr03g0092961' => 'han', 'HanXRQChr04g0106031' => 'han', 'HanXRQChr06g0168331' => 'han', 'HanXRQChr10g0290861' => 'han', 'HanXRQChr10g0305481' => 'han', 'HanXRQChr13g0423741' => 'han', 'HanXRQChr16g0510681' => 'han', 'HanXRQChr16g0530721' => 'han', 'Haze_02853' => 'cav', 'Haze_07983' => 'cav', 'Hma1.2p1_0535F.1_g173810' => 'hma', 'Hma1.2p1_2756F.1_g328020' => 'hma', 'HPP92_000442' => 'vpl', 'HPP92_003948' => 'vpl', 'HPP92_023976' => 'vpl', 'Hund11332' => 'sun', 'Hund14503' => 'sun', 'Hund17103' => 'sun', 'Hund27411' => 'sun', 'Lalb_Chr01g0021591' => 'lal', 'Lalb_Chr03g0040421' => 'lal', 'Lalb_Chr07g0195391' => 'lal', 'Lalb_Chr12g0210561' => 'lal', 'Lalb_Chr13g0290621' => 'lal', 'Lalb_Chr19g0126511' => 'lal', 'Lj1g0023152' => 'lja', 'Lj2C226G6' => 'lonja', 'Lj2g0007100' => 'lja', 'Lj3g0008598' => 'lja', 'Lj5g0008499' => 'lja', 'Lj7A548T43' => 'lonja', 'Lj7P558T34' => 'lonja', 'Lj8A275G67' => 'lonja', 'Lj9A555T37' => 'lonja', 'Lsat_1_v5_gn_3_126861' => 'lsa', 'Lsat_1_v5_gn_6_68740' => 'lsa', 'Lsat_1_v5_gn_6_94060' => 'lsa', 'Lsat_1_v5_gn_7_12161' => 'lsa', 'Lsat_1_v5_gn_9_107900' => 'lsa', 'Manes.01G086200' => 'mes', 'Manes.01G257404' => 'mes', 'Manes.01G274200' => 'mes', 'Manes.02G043300' => 'mes', 'Manes.05G055400' => 'mes', 'Mapoly0044s0032' => 'mpo', 'Mapoly0161s0012' => 'mpo', 'Mapoly0172s0023' => 'mpo', 'MBI01_g02258_MAGBIO' => 'mbi', 'MBI04_g22922_MAGBIO' => 'mbi', 'MBI07_g04745_MAGBIO' => 'mbi', 'MBI07_g09666_MAGBIO' => 'mbi', 'MD02G1213500' => 'mdo', 'MD04G1050100' => 'mdo', 'MD06G1049800' => 'mdo', 'MD07G1109500' => 'mdo', 'Medtr7g081660' => 'mtr', 'Medtr8g006960' => 'mtr', 'Medtr8g007425' => 'mtr', 'MELO3C003317.2' => 'cme', 'MELO3C022289.2' => 'cme', 'MELO3C033858.2' => 'cme', 'Migut.A01034' => 'egut', 'Migut.A01037' => 'egut', 'Migut.B01530' => 'egut', 'MSTRG.12141' => 'ama', 'MSTRG.17125' => 'ama', 'MSTRG.20686' => 'ama', 'MSTRG.4933' => 'ama', 'Nitab4.5_0000185g0150' => 'nta', 'Nitab4.5_0000500g0030' => 'nta', 'Nitab4.5_0000506g0020' => 'nta', 'Nitab4.5_0000920g0060' => 'nta', 'Nitab4.5_0002685g0040' => 'nta', 'Nitab4.5_0003456g0010' => 'nta', 'Nitab4.5_0006594g0050' => 'nta', 'Nitab4.5_0009955g0030' => 'nta', 'Nn2g14485' => 'nnu', 'Nn6g33814' => 'nnu', 'Oeu002321.1' => 'oeu', 'Oeu011237.1' => 'oeu', 'Oeu018041.1' => 'oeu', 'Oeu018042.1' => 'oeu', 'Oeu020083.3' => 'oeu', 'Oeu031157.1' => 'oeu', 'Oeu031414.1' => 'oeu', 'Oeu037449.2' => 'oeu', 'Oeu040197.1' => 'oeu', 'Oeu040683.3' => 'oeu', 'Oeu045667.1' => 'oeu', 'Oeu054073.1' => 'oeu', 'Os01g0603000' => 'osa', 'Os01g0721900' => 'osa', 'Os03g0845300' => 'osa', 'Os05g0533100' => 'osa', 'Os05g0589600' => 'osa', 'Peaxi162Scf00102g00839' => 'pax', 'Peaxi162Scf00190g01013' => 'pax', 'Peaxi162Scf00446g00611' => 'pax', 'Peaxi162Scf00475g00416' => 'pax', 'PGR031G0446' => 'pgr', 'PGR042G1184' => 'pgr', 'PGSC0003DMG400020488' => 'stu', 'PGSC0003DMG400025998' => 'stu', 'Phvul.007G003500' => 'pvu', 'Phvul.008G047300' => 'pvu', 'Phvul.010G049300' => 'pvu', 'Potri.001G153000' => 'ptr', 'Potri.002G138300' => 'ptr', 'Potri.003G081600' => 'ptr', 'Potri.014G049300' => 'ptr', 'Pp3c1_6130' => 'ppa', 'Pp3c2_30530' => 'ppa', 'Pp3c2_30970' => 'ppa', 'Pp3c7_26560' => 'ppa', 'Prupe.2G132500' => 'ppe', 'Prupe.5G060200' => 'ppe', 'Psat3g099160' => 'psa', 'Psat4g224720' => 'psa', 'PSO017G2053' => 'pso', 'PSO063G0952' => 'pso', 'PSO063G2805' => 'pso', 'PSO063G4392' => 'pso', 'PSO675G3432' => 'pso', 'PSO675G5190' => 'pso', 'PSO717G0024' => 'pso', 'PSO782G3687' => 'pso', 'PSO832G1381' => 'pso', 'QL04p030014' => 'qlo', 'QL09p049052' => 'qlo', 'QL12p009567' => 'qlo', 'RcHm_v2.0_Chr1g0348031' => 'rch', 'RcHm_v2.0_Chr7g0204831' => 'rch', 'RcHm_v2.0_Chr7g0204851' => 'rch', 'Rhsim01G0141100' => 'rsi', 'Rhsim07G0036400' => 'rsi', 'Rhsim07G0117800' => 'rsi', 'Sabra01G0122800' => 'sbr', 'Sabra02G0107900' => 'sbr', 'Sabra03G0052600' => 'sbr', 'Sabra14G0035100' => 'sbr', 'SalBow5G0459' => 'sbo', 'SalBow5G2230' => 'sbo', 'Sc01g0008170' => 'sci', 'Sc05g0001830' => 'sci', 'Sc22g0001090' => 'sci', 'Sc26g0001630' => 'sci', 'Sed0000430' => 'sed', 'Sed0001913' => 'sed', 'Sed0019221' => 'sed', 'Sed0021627' => 'sed', 'SEGI_07756' => 'sgi', 'SEGI_09917' => 'sgi', 'SEGI_34546' => 'sgi', 'SGA_v2.0_scaffold104G30211' => 'sas', 'SGA_v2.0_scaffold116G32282' => 'sas', 'SGA_v2.0_scaffold127G34016' => 'sas', 'SGA_v2.0_scaffold1333G53914' => 'sas', 'SGA_v2.0_scaffold199G41235' => 'sas', 'SGA_v2.0_scaffold4G02391' => 'sas', 'SGA_v2.0_scaffold51G18896' => 'sas', 'SGA_v2.0_scaffold52G19232' => 'sas', 'SGA_v2.0_scaffold902G53710' => 'sas', 'SMO203G0040' => 'smo', 'SMO281G0002' => 'smo', 'Solyc01g090190.3' => 'sly', 'Solyc08g007220.3' => 'sly', 'Sopen01g035980' => 'spe', 'Sopen08g003170' => 'spe', 'Sopen08g003180' => 'spe', 'Sp2g12010' => 'spa', 'Sp7g16640' => 'spa', 'Sp7g17250' => 'spa', 'TAR374G1144' => 'tar', 'TAR375G0305' => 'tar', 'TAR624G0231' => 'tar', 'TAR629G2824' => 'tar', 'TAR636G2146' => 'tar', 'THA.LOC104807918' => 'tha', 'THA.LOC104807919' => 'tha', 'THA.LOC104807920' => 'tha', 'THA.LOC104814464' => 'tha', 'Thecc.01G395600' => 'tca', 'Thecc.03G244100' => 'tca', 'Thhalv10000938m.g' => 'esa', 'Thhalv10025512m.g' => 'esa', 'Thhalv10025552m.g' => 'esa', 'TPR.G28792' => 'tpr', 'TPR.G35190' => 'tpr', 'TWI14G1246' => 'twi', 'TWI23G0570' => 'twi', 'TWI36G0339' => 'twi', 'TWI59G1071' => 'twi', 'TWI60G0908' => 'twi', 'TWI81G0055' => 'twi', 'unitig_750.g28411' => 'ugi', 'vmacro00034' => 'vma', 'vmacro13501' => 'vma', 'vmacro14134' => 'vma', 'vmacro21064' => 'vma', 'VMungo0331G1076' => 'vmu', 'VMungo0720G1714' => 'vmu', 'VMungo1215G1200' => 'vmu', 'VMungo1383G0355' => 'vmu', 'Zm00001eb136290' => 'zma', 'Zm00001eb154690' => 'zma', 'Zm00001eb154710' => 'zma', 'Zm00001eb287180' => 'zma', 'Zm00001eb345200' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001429' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001429' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001429' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001429' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001429', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '440', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p09600' => 'bna', 'A01p20360' => 'bna', 'A02p30950' => 'bna', 'A03p50500' => 'bna', 'A06p45200' => 'bna', 'A08p12770' => 'bna', 'A08p13200' => 'bna', 'A09p22930' => 'bna', 'Aa31LG2G13020' => 'aar', 'Aa31LG6G260' => 'aar', 'Aa31sc89G130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3349' => 'aag', 'Actinidia02183' => 'ach', 'Actinidia10852' => 'ach', 'Actinidia12142' => 'ach', 'Actinidia12643' => 'ach', 'Actinidia18351' => 'ach', 'Actinidia21634' => 'ach', 'Actinidia23780' => 'ach', 'Actinidia25896' => 'ach', 'Actinidia27543' => 'ach', 'Actinidia31503' => 'ach', 'Actinidia33510' => 'ach', 'Ah.05g177950' => 'amhyb', 'Ah.12g054140' => 'amhyb', 'Ah.12g054150' => 'amhyb', 'AL7G37100' => 'aly', 'AL7G37810' => 'aly', 'AL8G10820' => 'aly', 'Aqoxy3G02708' => 'aox', 'Aqoxy7G01250' => 'aox', 'arahy.Tifrunner.gnm1.ann1.180UYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L4YH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LE7D6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HL8AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7EL2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0G6H5' => 'arhy', 'AT4G16830' => 'ath', 'AT4G17520' => 'ath', 'AT5G47210' => 'ath', 'ATR0057G051' => 'atr', 'ATR0561G146' => 'atr', 'ATR0705G140' => 'atr', 'Atru.chr5.120' => 'acertr', 'Atru.chr9.1239' => 'acertr', 'AUR62007145' => 'cqu', 'AUR62013759' => 'cqu', 'AUR62018866' => 'cqu', 'AUR62023395' => 'cqu', 'BcaB04g18394' => 'bca', 'BcaB04g18425' => 'bca', 'BcaB07g30786' => 'bca', 'BcaC01g00266' => 'bca', 'BcaC02g09824' => 'bca', 'BcaC02g10806' => 'bca', 'BcaC03g16950' => 'bca', 'BcaC04g19353' => 'bca', 'BcaC04g21639' => 'bca', 'BcaC06g31406' => 'bca', 'BcaC06g33561' => 'bca', 'BcaC06g33563' => 'bca', 'BcaC06g34275' => 'bca', 'BcaC06g35280' => 'bca', 'BcaC07g38027' => 'bca', 'BcaC07g38085' => 'bca', 'BcaC07g42174' => 'bca', 'BcaC08g44282' => 'bca', 'BcaC09g50427' => 'bca', 'BcaC09g51634' => 'bca', 'BcaNung00084' => 'bca', 'BcaNung00142' => 'bca', 'BcaNung03458' => 'bca', 'BolC1t01082H' => 'bol', 'BolC1t02249H' => 'bol', 'BolC1t02503H' => 'bol', 'BolC1t02558H' => 'bol', 'BolC2t08027H' => 'bol', 'BolC2t10889H' => 'bol', 'BolC3t17215H' => 'bol', 'BolC3t20828H' => 'bol', 'BolC4t23994H' => 'bol', 'BolC4t25183H' => 'bol', 'BolC5t29725H' => 'bol', 'BolC5t32053H' => 'bol', 'BolC5t32068H' => 'bol', 'BolC6t35521H' => 'bol', 'BolC7t41249H' => 'bol', 'BolC7t42289H' => 'bol', 'BolC7t42351H' => 'bol', 'BolC7t43634H' => 'bol', 'BolC7t45390H' => 'bol', 'BolC8t48417H' => 'bol', 'BolC8t48418H' => 'bol', 'BolC8t48499H' => 'bol', 'BolC9t55814H' => 'bol', 'BolC9t59514H' => 'bol', 'BraA01t00902Z' => 'bra', 'BraA01t01966Z' => 'bra', 'BraA02t08106Z' => 'bra', 'BraA03t14139Z' => 'bra', 'BraA06t27389Z' => 'bra', 'BraA08t33265Z' => 'bra', 'BraA08t33302Z' => 'bra', 'BraA09t37894Z' => 'bra', 'C01p11170' => 'bna', 'C01p25530' => 'bna', 'C01p26140' => 'bna', 'C02p18860' => 'bna', 'C02p48560' => 'bna', 'C03p61440' => 'bna', 'C04p24940' => 'bna', 'C04p36170' => 'bna', 'C05p09840' => 'bna', 'C05p33270' => 'bna', 'C05p33450' => 'bna', 'C06p11470' => 'bna', 'C06p17000' => 'bna', 'C06p24330' => 'bna', 'C07p08360' => 'bna', 'C07p17830' => 'bna', 'C07p18400' => 'bna', 'C07p30910' => 'bna', 'C07p48820' => 'bna', 'C08p52330' => 'bna', 'C09p29510' => 'bna', 'CAN.G1497.15' => 'can', 'CAN.G62.10' => 'can', 'CAN.G761.26' => 'can', 'CAN.G845.17' => 'can', 'CANSAT01G0982' => 'cansat', 'CANSAT21G2599' => 'cansat', 'CANSAT25G2969' => 'cansat', 'CARHR174150' => 'chi', 'CARHR223450' => 'chi', 'CARHR224220' => 'chi', 'Carub.0007s2387' => 'cru', 'Carub.0007s2451' => 'cru', 'Carub.0008s0053' => 'cru', 'Ca_08064_v3' => 'car', 'Ca_25800_v3' => 'car', 'CBR_g20411' => 'cbr', 'Cc00_g26000' => 'ccan', 'Cc08_g11620' => 'ccan', 'CDE02G0684' => 'cde', 'CDE05G1379' => 'cde', 'CDE06G0510' => 'cde', 'CDE06G1167' => 'cde', 'CDE06G1858' => 'cde', 'CDE06G2514' => 'cde', 'CDE11G0377' => 'cde', 'Cfa011064' => 'cfa', 'Cfa012663' => 'cfa', 'Ciclev10020747m.g' => 'ccl', 'CiPaw.12G048100' => 'cil', 'CiPaw.13G025800' => 'cil', 'CiPaw.14G020000' => 'cil', 'CiPaw.14G041200' => 'cil', 'ClCG06G002440' => 'cla', 'ClCG09G012870' => 'cla', 'COL.COLO4_10016' => 'col', 'COL.COLO4_12401' => 'col', 'Cpa.g.c46241' => 'cpa', 'Cpa.g.sc22.60' => 'cpa', 'Cpa.g.sc672.2' => 'cpa', 'Cre09.g393358' => 'cre', 'CsaV3_3G049990' => 'csa', 'CsaV3_6G008690' => 'csa', 'CsaV3_6G008700' => 'csa', 'CSS0000873' => 'camsi', 'CSS0006185' => 'camsi', 'CSS0018232' => 'camsi', 'CSS0024114' => 'camsi', 'CSS0038516' => 'camsi', 'CSS0045240' => 'camsi', 'CSS0045630' => 'camsi', 'DCAR_000646' => 'dca', 'DCAR_004601' => 'dca', 'DCAR_016119' => 'dca', 'DCAR_025063' => 'dca', 'DCAR_029471' => 'dca', 'Dinv21687' => 'din', 'Dinv28852' => 'din', 'Dinv43611' => 'din', 'Dinv44058' => 'din', 'Duzib068G1311' => 'dzi', 'Duzib084G0208' => 'dzi', 'Duzib138G1049' => 'dzi', 'Duzib205G0586' => 'dzi', 'Duzib205G0990' => 'dzi', 'Duzib268G0869' => 'dzi', 'ECA233G0654' => 'eca', 'ECA236G1942' => 'eca', 'ECA236G2353' => 'eca', 'ECA240G0458' => 'eca', 'EL10Ac1g00747' => 'bvu', 'EL10Ac5g12298' => 'bvu', 'Eucgr.D02118' => 'egr', 'FAN01G0869' => 'fan', 'FAN03G2297' => 'fan', 'FAN04G2274' => 'fan', 'FAN06G0752' => 'fan', 'FAN06G2226' => 'fan', 'FAN08G3266' => 'fan', 'FAN10G2227' => 'fan', 'FAN10G3725' => 'fan', 'FAN13G1753' => 'fan', 'FAN18G3763' => 'fan', 'FvH4_5g20020' => 'fve', 'FvH4_7g10280' => 'fve', 'Glyma.03G110300' => 'gma', 'Glyma.07G114600' => 'gma', 'Glyma.09G243200' => 'gma', 'Glyma.18G251400' => 'gma', 'Glyma.18G257400' => 'gma', 'Glyma.20G246700' => 'gma', 'Gohir.A08G029201' => 'ghi', 'Gohir.A08G138700' => 'ghi', 'Gohir.A08G138900' => 'ghi', 'Gohir.A08G166200' => 'ghi', 'Gohir.A09G196800' => 'ghi', 'Gohir.D08G039900' => 'ghi', 'Gohir.D08G160000' => 'ghi', 'Gohir.D08G160100' => 'ghi', 'Gohir.D08G185100' => 'ghi', 'Gohir.D09G191400' => 'ghi', 'Gorai.004G038700' => 'gra', 'Gorai.004G166200' => 'gra', 'Gorai.004G166300' => 'gra', 'Gorai.004G194400' => 'gra', 'Gorai.006G214200' => 'gra', 'GSVIVG01002125001' => 'vvi', 'GSVIVG01018290001' => 'vvi', 'HanXRQChr03g0092961' => 'han', 'HanXRQChr04g0106031' => 'han', 'HanXRQChr06g0168331' => 'han', 'HanXRQChr10g0290861' => 'han', 'HanXRQChr10g0305481' => 'han', 'HanXRQChr13g0423741' => 'han', 'HanXRQChr16g0510681' => 'han', 'HanXRQChr16g0530721' => 'han', 'Haze_02853' => 'cav', 'Haze_07983' => 'cav', 'Hma1.2p1_0535F.1_g173810' => 'hma', 'Hma1.2p1_2756F.1_g328020' => 'hma', 'HPP92_000442' => 'vpl', 'HPP92_003948' => 'vpl', 'HPP92_023976' => 'vpl', 'Hund11332' => 'sun', 'Hund14503' => 'sun', 'Hund17103' => 'sun', 'Hund27411' => 'sun', 'Lalb_Chr01g0021591' => 'lal', 'Lalb_Chr03g0040421' => 'lal', 'Lalb_Chr07g0195391' => 'lal', 'Lalb_Chr12g0210561' => 'lal', 'Lalb_Chr13g0290621' => 'lal', 'Lalb_Chr19g0126511' => 'lal', 'Lj1g0023152' => 'lja', 'Lj2C226G6' => 'lonja', 'Lj2g0007100' => 'lja', 'Lj3g0008598' => 'lja', 'Lj5g0008499' => 'lja', 'Lj7A548T43' => 'lonja', 'Lj7P558T34' => 'lonja', 'Lj8A275G67' => 'lonja', 'Lj9A555T37' => 'lonja', 'Lsat_1_v5_gn_3_126861' => 'lsa', 'Lsat_1_v5_gn_6_68740' => 'lsa', 'Lsat_1_v5_gn_6_94060' => 'lsa', 'Lsat_1_v5_gn_7_12161' => 'lsa', 'Lsat_1_v5_gn_9_107900' => 'lsa', 'Manes.01G086200' => 'mes', 'Manes.01G257404' => 'mes', 'Manes.01G274200' => 'mes', 'Manes.02G043300' => 'mes', 'Manes.05G055400' => 'mes', 'Mapoly0044s0032' => 'mpo', 'Mapoly0161s0012' => 'mpo', 'Mapoly0172s0023' => 'mpo', 'MBI01_g02258_MAGBIO' => 'mbi', 'MBI04_g22922_MAGBIO' => 'mbi', 'MBI07_g04745_MAGBIO' => 'mbi', 'MBI07_g09666_MAGBIO' => 'mbi', 'MD02G1213500' => 'mdo', 'MD04G1050100' => 'mdo', 'MD06G1049800' => 'mdo', 'MD07G1109500' => 'mdo', 'Medtr7g081660' => 'mtr', 'Medtr8g006960' => 'mtr', 'Medtr8g007425' => 'mtr', 'MELO3C003317.2' => 'cme', 'MELO3C022289.2' => 'cme', 'MELO3C033858.2' => 'cme', 'Migut.A01034' => 'egut', 'Migut.A01037' => 'egut', 'Migut.B01530' => 'egut', 'MSTRG.12141' => 'ama', 'MSTRG.17125' => 'ama', 'MSTRG.20686' => 'ama', 'MSTRG.4933' => 'ama', 'Nitab4.5_0000185g0150' => 'nta', 'Nitab4.5_0000500g0030' => 'nta', 'Nitab4.5_0000506g0020' => 'nta', 'Nitab4.5_0000920g0060' => 'nta', 'Nitab4.5_0002685g0040' => 'nta', 'Nitab4.5_0003456g0010' => 'nta', 'Nitab4.5_0006594g0050' => 'nta', 'Nitab4.5_0009955g0030' => 'nta', 'Nn2g14485' => 'nnu', 'Nn6g33814' => 'nnu', 'Oeu002321.1' => 'oeu', 'Oeu011237.1' => 'oeu', 'Oeu018041.1' => 'oeu', 'Oeu018042.1' => 'oeu', 'Oeu020083.3' => 'oeu', 'Oeu031157.1' => 'oeu', 'Oeu031414.1' => 'oeu', 'Oeu037449.2' => 'oeu', 'Oeu040197.1' => 'oeu', 'Oeu040683.3' => 'oeu', 'Oeu045667.1' => 'oeu', 'Oeu054073.1' => 'oeu', 'Os01g0603000' => 'osa', 'Os01g0721900' => 'osa', 'Os03g0845300' => 'osa', 'Os05g0533100' => 'osa', 'Os05g0589600' => 'osa', 'Peaxi162Scf00102g00839' => 'pax', 'Peaxi162Scf00190g01013' => 'pax', 'Peaxi162Scf00446g00611' => 'pax', 'Peaxi162Scf00475g00416' => 'pax', 'PGR031G0446' => 'pgr', 'PGR042G1184' => 'pgr', 'PGSC0003DMG400020488' => 'stu', 'PGSC0003DMG400025998' => 'stu', 'Phvul.007G003500' => 'pvu', 'Phvul.008G047300' => 'pvu', 'Phvul.010G049300' => 'pvu', 'Potri.001G153000' => 'ptr', 'Potri.002G138300' => 'ptr', 'Potri.003G081600' => 'ptr', 'Potri.014G049300' => 'ptr', 'Pp3c1_6130' => 'ppa', 'Pp3c2_30530' => 'ppa', 'Pp3c2_30970' => 'ppa', 'Pp3c7_26560' => 'ppa', 'Prupe.2G132500' => 'ppe', 'Prupe.5G060200' => 'ppe', 'Psat3g099160' => 'psa', 'Psat4g224720' => 'psa', 'PSO017G2053' => 'pso', 'PSO063G0952' => 'pso', 'PSO063G2805' => 'pso', 'PSO063G4392' => 'pso', 'PSO675G3432' => 'pso', 'PSO675G5190' => 'pso', 'PSO717G0024' => 'pso', 'PSO782G3687' => 'pso', 'PSO832G1381' => 'pso', 'QL04p030014' => 'qlo', 'QL09p049052' => 'qlo', 'QL12p009567' => 'qlo', 'RcHm_v2.0_Chr1g0348031' => 'rch', 'RcHm_v2.0_Chr7g0204831' => 'rch', 'RcHm_v2.0_Chr7g0204851' => 'rch', 'Rhsim01G0141100' => 'rsi', 'Rhsim07G0036400' => 'rsi', 'Rhsim07G0117800' => 'rsi', 'Sabra01G0122800' => 'sbr', 'Sabra02G0107900' => 'sbr', 'Sabra03G0052600' => 'sbr', 'Sabra14G0035100' => 'sbr', 'SalBow5G0459' => 'sbo', 'SalBow5G2230' => 'sbo', 'Sc01g0008170' => 'sci', 'Sc05g0001830' => 'sci', 'Sc22g0001090' => 'sci', 'Sc26g0001630' => 'sci', 'Sed0000430' => 'sed', 'Sed0001913' => 'sed', 'Sed0019221' => 'sed', 'Sed0021627' => 'sed', 'SEGI_07756' => 'sgi', 'SEGI_09917' => 'sgi', 'SEGI_34546' => 'sgi', 'SGA_v2.0_scaffold104G30211' => 'sas', 'SGA_v2.0_scaffold116G32282' => 'sas', 'SGA_v2.0_scaffold127G34016' => 'sas', 'SGA_v2.0_scaffold1333G53914' => 'sas', 'SGA_v2.0_scaffold199G41235' => 'sas', 'SGA_v2.0_scaffold4G02391' => 'sas', 'SGA_v2.0_scaffold51G18896' => 'sas', 'SGA_v2.0_scaffold52G19232' => 'sas', 'SGA_v2.0_scaffold902G53710' => 'sas', 'SMO203G0040' => 'smo', 'SMO281G0002' => 'smo', 'Solyc01g090190.3' => 'sly', 'Solyc08g007220.3' => 'sly', 'Sopen01g035980' => 'spe', 'Sopen08g003170' => 'spe', 'Sopen08g003180' => 'spe', 'Sp2g12010' => 'spa', 'Sp7g16640' => 'spa', 'Sp7g17250' => 'spa', 'TAR374G1144' => 'tar', 'TAR375G0305' => 'tar', 'TAR624G0231' => 'tar', 'TAR629G2824' => 'tar', 'TAR636G2146' => 'tar', 'THA.LOC104807918' => 'tha', 'THA.LOC104807919' => 'tha', 'THA.LOC104807920' => 'tha', 'THA.LOC104814464' => 'tha', 'Thecc.01G395600' => 'tca', 'Thecc.03G244100' => 'tca', 'Thhalv10000938m.g' => 'esa', 'Thhalv10025512m.g' => 'esa', 'Thhalv10025552m.g' => 'esa', 'TPR.G28792' => 'tpr', 'TPR.G35190' => 'tpr', 'TWI14G1246' => 'twi', 'TWI23G0570' => 'twi', 'TWI36G0339' => 'twi', 'TWI59G1071' => 'twi', 'TWI60G0908' => 'twi', 'TWI81G0055' => 'twi', 'unitig_750.g28411' => 'ugi', 'vmacro00034' => 'vma', 'vmacro13501' => 'vma', 'vmacro14134' => 'vma', 'vmacro21064' => 'vma', 'VMungo0331G1076' => 'vmu', 'VMungo0720G1714' => 'vmu', 'VMungo1215G1200' => 'vmu', 'VMungo1383G0355' => 'vmu', 'Zm00001eb136290' => 'zma', 'Zm00001eb154690' => 'zma', 'Zm00001eb154710' => 'zma', 'Zm00001eb287180' => 'zma', 'Zm00001eb345200' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001429', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001429' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001429', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '440', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001429' ) ), 'genes' => array( 'A01p09600' => 'bna', 'A01p20360' => 'bna', 'A02p30950' => 'bna', 'A03p50500' => 'bna', 'A06p45200' => 'bna', 'A08p12770' => 'bna', 'A08p13200' => 'bna', 'A09p22930' => 'bna', 'Aa31LG2G13020' => 'aar', 'Aa31LG6G260' => 'aar', 'Aa31sc89G130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3349' => 'aag', 'Actinidia02183' => 'ach', 'Actinidia10852' => 'ach', 'Actinidia12142' => 'ach', 'Actinidia12643' => 'ach', 'Actinidia18351' => 'ach', 'Actinidia21634' => 'ach', 'Actinidia23780' => 'ach', 'Actinidia25896' => 'ach', 'Actinidia27543' => 'ach', 'Actinidia31503' => 'ach', 'Actinidia33510' => 'ach', 'Ah.05g177950' => 'amhyb', 'Ah.12g054140' => 'amhyb', 'Ah.12g054150' => 'amhyb', 'AL7G37100' => 'aly', 'AL7G37810' => 'aly', 'AL8G10820' => 'aly', 'Aqoxy3G02708' => 'aox', 'Aqoxy7G01250' => 'aox', 'arahy.Tifrunner.gnm1.ann1.180UYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L4YH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LE7D6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HL8AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7EL2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0G6H5' => 'arhy', 'AT4G16830' => 'ath', 'AT4G17520' => 'ath', 'AT5G47210' => 'ath', 'ATR0057G051' => 'atr', 'ATR0561G146' => 'atr', 'ATR0705G140' => 'atr', 'Atru.chr5.120' => 'acertr', 'Atru.chr9.1239' => 'acertr', 'AUR62007145' => 'cqu', 'AUR62013759' => 'cqu', 'AUR62018866' => 'cqu', 'AUR62023395' => 'cqu', 'BcaB04g18394' => 'bca', 'BcaB04g18425' => 'bca', 'BcaB07g30786' => 'bca', 'BcaC01g00266' => 'bca', 'BcaC02g09824' => 'bca', 'BcaC02g10806' => 'bca', 'BcaC03g16950' => 'bca', 'BcaC04g19353' => 'bca', 'BcaC04g21639' => 'bca', 'BcaC06g31406' => 'bca', 'BcaC06g33561' => 'bca', 'BcaC06g33563' => 'bca', 'BcaC06g34275' => 'bca', 'BcaC06g35280' => 'bca', 'BcaC07g38027' => 'bca', 'BcaC07g38085' => 'bca', 'BcaC07g42174' => 'bca', 'BcaC08g44282' => 'bca', 'BcaC09g50427' => 'bca', 'BcaC09g51634' => 'bca', 'BcaNung00084' => 'bca', 'BcaNung00142' => 'bca', 'BcaNung03458' => 'bca', 'BolC1t01082H' => 'bol', 'BolC1t02249H' => 'bol', 'BolC1t02503H' => 'bol', 'BolC1t02558H' => 'bol', 'BolC2t08027H' => 'bol', 'BolC2t10889H' => 'bol', 'BolC3t17215H' => 'bol', 'BolC3t20828H' => 'bol', 'BolC4t23994H' => 'bol', 'BolC4t25183H' => 'bol', 'BolC5t29725H' => 'bol', 'BolC5t32053H' => 'bol', 'BolC5t32068H' => 'bol', 'BolC6t35521H' => 'bol', 'BolC7t41249H' => 'bol', 'BolC7t42289H' => 'bol', 'BolC7t42351H' => 'bol', 'BolC7t43634H' => 'bol', 'BolC7t45390H' => 'bol', 'BolC8t48417H' => 'bol', 'BolC8t48418H' => 'bol', 'BolC8t48499H' => 'bol', 'BolC9t55814H' => 'bol', 'BolC9t59514H' => 'bol', 'BraA01t00902Z' => 'bra', 'BraA01t01966Z' => 'bra', 'BraA02t08106Z' => 'bra', 'BraA03t14139Z' => 'bra', 'BraA06t27389Z' => 'bra', 'BraA08t33265Z' => 'bra', 'BraA08t33302Z' => 'bra', 'BraA09t37894Z' => 'bra', 'C01p11170' => 'bna', 'C01p25530' => 'bna', 'C01p26140' => 'bna', 'C02p18860' => 'bna', 'C02p48560' => 'bna', 'C03p61440' => 'bna', 'C04p24940' => 'bna', 'C04p36170' => 'bna', 'C05p09840' => 'bna', 'C05p33270' => 'bna', 'C05p33450' => 'bna', 'C06p11470' => 'bna', 'C06p17000' => 'bna', 'C06p24330' => 'bna', 'C07p08360' => 'bna', 'C07p17830' => 'bna', 'C07p18400' => 'bna', 'C07p30910' => 'bna', 'C07p48820' => 'bna', 'C08p52330' => 'bna', 'C09p29510' => 'bna', 'CAN.G1497.15' => 'can', 'CAN.G62.10' => 'can', 'CAN.G761.26' => 'can', 'CAN.G845.17' => 'can', 'CANSAT01G0982' => 'cansat', 'CANSAT21G2599' => 'cansat', 'CANSAT25G2969' => 'cansat', 'CARHR174150' => 'chi', 'CARHR223450' => 'chi', 'CARHR224220' => 'chi', 'Carub.0007s2387' => 'cru', 'Carub.0007s2451' => 'cru', 'Carub.0008s0053' => 'cru', 'Ca_08064_v3' => 'car', 'Ca_25800_v3' => 'car', 'CBR_g20411' => 'cbr', 'Cc00_g26000' => 'ccan', 'Cc08_g11620' => 'ccan', 'CDE02G0684' => 'cde', 'CDE05G1379' => 'cde', 'CDE06G0510' => 'cde', 'CDE06G1167' => 'cde', 'CDE06G1858' => 'cde', 'CDE06G2514' => 'cde', 'CDE11G0377' => 'cde', 'Cfa011064' => 'cfa', 'Cfa012663' => 'cfa', 'Ciclev10020747m.g' => 'ccl', 'CiPaw.12G048100' => 'cil', 'CiPaw.13G025800' => 'cil', 'CiPaw.14G020000' => 'cil', 'CiPaw.14G041200' => 'cil', 'ClCG06G002440' => 'cla', 'ClCG09G012870' => 'cla', 'COL.COLO4_10016' => 'col', 'COL.COLO4_12401' => 'col', 'Cpa.g.c46241' => 'cpa', 'Cpa.g.sc22.60' => 'cpa', 'Cpa.g.sc672.2' => 'cpa', 'Cre09.g393358' => 'cre', 'CsaV3_3G049990' => 'csa', 'CsaV3_6G008690' => 'csa', 'CsaV3_6G008700' => 'csa', 'CSS0000873' => 'camsi', 'CSS0006185' => 'camsi', 'CSS0018232' => 'camsi', 'CSS0024114' => 'camsi', 'CSS0038516' => 'camsi', 'CSS0045240' => 'camsi', 'CSS0045630' => 'camsi', 'DCAR_000646' => 'dca', 'DCAR_004601' => 'dca', 'DCAR_016119' => 'dca', 'DCAR_025063' => 'dca', 'DCAR_029471' => 'dca', 'Dinv21687' => 'din', 'Dinv28852' => 'din', 'Dinv43611' => 'din', 'Dinv44058' => 'din', 'Duzib068G1311' => 'dzi', 'Duzib084G0208' => 'dzi', 'Duzib138G1049' => 'dzi', 'Duzib205G0586' => 'dzi', 'Duzib205G0990' => 'dzi', 'Duzib268G0869' => 'dzi', 'ECA233G0654' => 'eca', 'ECA236G1942' => 'eca', 'ECA236G2353' => 'eca', 'ECA240G0458' => 'eca', 'EL10Ac1g00747' => 'bvu', 'EL10Ac5g12298' => 'bvu', 'Eucgr.D02118' => 'egr', 'FAN01G0869' => 'fan', 'FAN03G2297' => 'fan', 'FAN04G2274' => 'fan', 'FAN06G0752' => 'fan', 'FAN06G2226' => 'fan', 'FAN08G3266' => 'fan', 'FAN10G2227' => 'fan', 'FAN10G3725' => 'fan', 'FAN13G1753' => 'fan', 'FAN18G3763' => 'fan', 'FvH4_5g20020' => 'fve', 'FvH4_7g10280' => 'fve', 'Glyma.03G110300' => 'gma', 'Glyma.07G114600' => 'gma', 'Glyma.09G243200' => 'gma', 'Glyma.18G251400' => 'gma', 'Glyma.18G257400' => 'gma', 'Glyma.20G246700' => 'gma', 'Gohir.A08G029201' => 'ghi', 'Gohir.A08G138700' => 'ghi', 'Gohir.A08G138900' => 'ghi', 'Gohir.A08G166200' => 'ghi', 'Gohir.A09G196800' => 'ghi', 'Gohir.D08G039900' => 'ghi', 'Gohir.D08G160000' => 'ghi', 'Gohir.D08G160100' => 'ghi', 'Gohir.D08G185100' => 'ghi', 'Gohir.D09G191400' => 'ghi', 'Gorai.004G038700' => 'gra', 'Gorai.004G166200' => 'gra', 'Gorai.004G166300' => 'gra', 'Gorai.004G194400' => 'gra', 'Gorai.006G214200' => 'gra', 'GSVIVG01002125001' => 'vvi', 'GSVIVG01018290001' => 'vvi', 'HanXRQChr03g0092961' => 'han', 'HanXRQChr04g0106031' => 'han', 'HanXRQChr06g0168331' => 'han', 'HanXRQChr10g0290861' => 'han', 'HanXRQChr10g0305481' => 'han', 'HanXRQChr13g0423741' => 'han', 'HanXRQChr16g0510681' => 'han', 'HanXRQChr16g0530721' => 'han', 'Haze_02853' => 'cav', 'Haze_07983' => 'cav', 'Hma1.2p1_0535F.1_g173810' => 'hma', 'Hma1.2p1_2756F.1_g328020' => 'hma', 'HPP92_000442' => 'vpl', 'HPP92_003948' => 'vpl', 'HPP92_023976' => 'vpl', 'Hund11332' => 'sun', 'Hund14503' => 'sun', 'Hund17103' => 'sun', 'Hund27411' => 'sun', 'Lalb_Chr01g0021591' => 'lal', 'Lalb_Chr03g0040421' => 'lal', 'Lalb_Chr07g0195391' => 'lal', 'Lalb_Chr12g0210561' => 'lal', 'Lalb_Chr13g0290621' => 'lal', 'Lalb_Chr19g0126511' => 'lal', 'Lj1g0023152' => 'lja', 'Lj2C226G6' => 'lonja', 'Lj2g0007100' => 'lja', 'Lj3g0008598' => 'lja', 'Lj5g0008499' => 'lja', 'Lj7A548T43' => 'lonja', 'Lj7P558T34' => 'lonja', 'Lj8A275G67' => 'lonja', 'Lj9A555T37' => 'lonja', 'Lsat_1_v5_gn_3_126861' => 'lsa', 'Lsat_1_v5_gn_6_68740' => 'lsa', 'Lsat_1_v5_gn_6_94060' => 'lsa', 'Lsat_1_v5_gn_7_12161' => 'lsa', 'Lsat_1_v5_gn_9_107900' => 'lsa', 'Manes.01G086200' => 'mes', 'Manes.01G257404' => 'mes', 'Manes.01G274200' => 'mes', 'Manes.02G043300' => 'mes', 'Manes.05G055400' => 'mes', 'Mapoly0044s0032' => 'mpo', 'Mapoly0161s0012' => 'mpo', 'Mapoly0172s0023' => 'mpo', 'MBI01_g02258_MAGBIO' => 'mbi', 'MBI04_g22922_MAGBIO' => 'mbi', 'MBI07_g04745_MAGBIO' => 'mbi', 'MBI07_g09666_MAGBIO' => 'mbi', 'MD02G1213500' => 'mdo', 'MD04G1050100' => 'mdo', 'MD06G1049800' => 'mdo', 'MD07G1109500' => 'mdo', 'Medtr7g081660' => 'mtr', 'Medtr8g006960' => 'mtr', 'Medtr8g007425' => 'mtr', 'MELO3C003317.2' => 'cme', 'MELO3C022289.2' => 'cme', 'MELO3C033858.2' => 'cme', 'Migut.A01034' => 'egut', 'Migut.A01037' => 'egut', 'Migut.B01530' => 'egut', 'MSTRG.12141' => 'ama', 'MSTRG.17125' => 'ama', 'MSTRG.20686' => 'ama', 'MSTRG.4933' => 'ama', 'Nitab4.5_0000185g0150' => 'nta', 'Nitab4.5_0000500g0030' => 'nta', 'Nitab4.5_0000506g0020' => 'nta', 'Nitab4.5_0000920g0060' => 'nta', 'Nitab4.5_0002685g0040' => 'nta', 'Nitab4.5_0003456g0010' => 'nta', 'Nitab4.5_0006594g0050' => 'nta', 'Nitab4.5_0009955g0030' => 'nta', 'Nn2g14485' => 'nnu', 'Nn6g33814' => 'nnu', 'Oeu002321.1' => 'oeu', 'Oeu011237.1' => 'oeu', 'Oeu018041.1' => 'oeu', 'Oeu018042.1' => 'oeu', 'Oeu020083.3' => 'oeu', 'Oeu031157.1' => 'oeu', 'Oeu031414.1' => 'oeu', 'Oeu037449.2' => 'oeu', 'Oeu040197.1' => 'oeu', 'Oeu040683.3' => 'oeu', 'Oeu045667.1' => 'oeu', 'Oeu054073.1' => 'oeu', 'Os01g0603000' => 'osa', 'Os01g0721900' => 'osa', 'Os03g0845300' => 'osa', 'Os05g0533100' => 'osa', 'Os05g0589600' => 'osa', 'Peaxi162Scf00102g00839' => 'pax', 'Peaxi162Scf00190g01013' => 'pax', 'Peaxi162Scf00446g00611' => 'pax', 'Peaxi162Scf00475g00416' => 'pax', 'PGR031G0446' => 'pgr', 'PGR042G1184' => 'pgr', 'PGSC0003DMG400020488' => 'stu', 'PGSC0003DMG400025998' => 'stu', 'Phvul.007G003500' => 'pvu', 'Phvul.008G047300' => 'pvu', 'Phvul.010G049300' => 'pvu', 'Potri.001G153000' => 'ptr', 'Potri.002G138300' => 'ptr', 'Potri.003G081600' => 'ptr', 'Potri.014G049300' => 'ptr', 'Pp3c1_6130' => 'ppa', 'Pp3c2_30530' => 'ppa', 'Pp3c2_30970' => 'ppa', 'Pp3c7_26560' => 'ppa', 'Prupe.2G132500' => 'ppe', 'Prupe.5G060200' => 'ppe', 'Psat3g099160' => 'psa', 'Psat4g224720' => 'psa', 'PSO017G2053' => 'pso', 'PSO063G0952' => 'pso', 'PSO063G2805' => 'pso', 'PSO063G4392' => 'pso', 'PSO675G3432' => 'pso', 'PSO675G5190' => 'pso', 'PSO717G0024' => 'pso', 'PSO782G3687' => 'pso', 'PSO832G1381' => 'pso', 'QL04p030014' => 'qlo', 'QL09p049052' => 'qlo', 'QL12p009567' => 'qlo', 'RcHm_v2.0_Chr1g0348031' => 'rch', 'RcHm_v2.0_Chr7g0204831' => 'rch', 'RcHm_v2.0_Chr7g0204851' => 'rch', 'Rhsim01G0141100' => 'rsi', 'Rhsim07G0036400' => 'rsi', 'Rhsim07G0117800' => 'rsi', 'Sabra01G0122800' => 'sbr', 'Sabra02G0107900' => 'sbr', 'Sabra03G0052600' => 'sbr', 'Sabra14G0035100' => 'sbr', 'SalBow5G0459' => 'sbo', 'SalBow5G2230' => 'sbo', 'Sc01g0008170' => 'sci', 'Sc05g0001830' => 'sci', 'Sc22g0001090' => 'sci', 'Sc26g0001630' => 'sci', 'Sed0000430' => 'sed', 'Sed0001913' => 'sed', 'Sed0019221' => 'sed', 'Sed0021627' => 'sed', 'SEGI_07756' => 'sgi', 'SEGI_09917' => 'sgi', 'SEGI_34546' => 'sgi', 'SGA_v2.0_scaffold104G30211' => 'sas', 'SGA_v2.0_scaffold116G32282' => 'sas', 'SGA_v2.0_scaffold127G34016' => 'sas', 'SGA_v2.0_scaffold1333G53914' => 'sas', 'SGA_v2.0_scaffold199G41235' => 'sas', 'SGA_v2.0_scaffold4G02391' => 'sas', 'SGA_v2.0_scaffold51G18896' => 'sas', 'SGA_v2.0_scaffold52G19232' => 'sas', 'SGA_v2.0_scaffold902G53710' => 'sas', 'SMO203G0040' => 'smo', 'SMO281G0002' => 'smo', 'Solyc01g090190.3' => 'sly', 'Solyc08g007220.3' => 'sly', 'Sopen01g035980' => 'spe', 'Sopen08g003170' => 'spe', 'Sopen08g003180' => 'spe', 'Sp2g12010' => 'spa', 'Sp7g16640' => 'spa', 'Sp7g17250' => 'spa', 'TAR374G1144' => 'tar', 'TAR375G0305' => 'tar', 'TAR624G0231' => 'tar', 'TAR629G2824' => 'tar', 'TAR636G2146' => 'tar', 'THA.LOC104807918' => 'tha', 'THA.LOC104807919' => 'tha', 'THA.LOC104807920' => 'tha', 'THA.LOC104814464' => 'tha', 'Thecc.01G395600' => 'tca', 'Thecc.03G244100' => 'tca', 'Thhalv10000938m.g' => 'esa', 'Thhalv10025512m.g' => 'esa', 'Thhalv10025552m.g' => 'esa', 'TPR.G28792' => 'tpr', 'TPR.G35190' => 'tpr', 'TWI14G1246' => 'twi', 'TWI23G0570' => 'twi', 'TWI36G0339' => 'twi', 'TWI59G1071' => 'twi', 'TWI60G0908' => 'twi', 'TWI81G0055' => 'twi', 'unitig_750.g28411' => 'ugi', 'vmacro00034' => 'vma', 'vmacro13501' => 'vma', 'vmacro14134' => 'vma', 'vmacro21064' => 'vma', 'VMungo0331G1076' => 'vmu', 'VMungo0720G1714' => 'vmu', 'VMungo1215G1200' => 'vmu', 'VMungo1383G0355' => 'vmu', 'Zm00001eb136290' => 'zma', 'Zm00001eb154690' => 'zma', 'Zm00001eb154710' => 'zma', 'Zm00001eb287180' => 'zma', 'Zm00001eb345200' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001429' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001429' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001429' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001429' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001429', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '440', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p09600' => 'bna', 'A01p20360' => 'bna', 'A02p30950' => 'bna', 'A03p50500' => 'bna', 'A06p45200' => 'bna', 'A08p12770' => 'bna', 'A08p13200' => 'bna', 'A09p22930' => 'bna', 'Aa31LG2G13020' => 'aar', 'Aa31LG6G260' => 'aar', 'Aa31sc89G130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3349' => 'aag', 'Actinidia02183' => 'ach', 'Actinidia10852' => 'ach', 'Actinidia12142' => 'ach', 'Actinidia12643' => 'ach', 'Actinidia18351' => 'ach', 'Actinidia21634' => 'ach', 'Actinidia23780' => 'ach', 'Actinidia25896' => 'ach', 'Actinidia27543' => 'ach', 'Actinidia31503' => 'ach', 'Actinidia33510' => 'ach', 'Ah.05g177950' => 'amhyb', 'Ah.12g054140' => 'amhyb', 'Ah.12g054150' => 'amhyb', 'AL7G37100' => 'aly', 'AL7G37810' => 'aly', 'AL8G10820' => 'aly', 'Aqoxy3G02708' => 'aox', 'Aqoxy7G01250' => 'aox', 'arahy.Tifrunner.gnm1.ann1.180UYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L4YH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LE7D6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HL8AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7EL2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0G6H5' => 'arhy', 'AT4G16830' => 'ath', 'AT4G17520' => 'ath', 'AT5G47210' => 'ath', 'ATR0057G051' => 'atr', 'ATR0561G146' => 'atr', 'ATR0705G140' => 'atr', 'Atru.chr5.120' => 'acertr', 'Atru.chr9.1239' => 'acertr', 'AUR62007145' => 'cqu', 'AUR62013759' => 'cqu', 'AUR62018866' => 'cqu', 'AUR62023395' => 'cqu', 'BcaB04g18394' => 'bca', 'BcaB04g18425' => 'bca', 'BcaB07g30786' => 'bca', 'BcaC01g00266' => 'bca', 'BcaC02g09824' => 'bca', 'BcaC02g10806' => 'bca', 'BcaC03g16950' => 'bca', 'BcaC04g19353' => 'bca', 'BcaC04g21639' => 'bca', 'BcaC06g31406' => 'bca', 'BcaC06g33561' => 'bca', 'BcaC06g33563' => 'bca', 'BcaC06g34275' => 'bca', 'BcaC06g35280' => 'bca', 'BcaC07g38027' => 'bca', 'BcaC07g38085' => 'bca', 'BcaC07g42174' => 'bca', 'BcaC08g44282' => 'bca', 'BcaC09g50427' => 'bca', 'BcaC09g51634' => 'bca', 'BcaNung00084' => 'bca', 'BcaNung00142' => 'bca', 'BcaNung03458' => 'bca', 'BolC1t01082H' => 'bol', 'BolC1t02249H' => 'bol', 'BolC1t02503H' => 'bol', 'BolC1t02558H' => 'bol', 'BolC2t08027H' => 'bol', 'BolC2t10889H' => 'bol', 'BolC3t17215H' => 'bol', 'BolC3t20828H' => 'bol', 'BolC4t23994H' => 'bol', 'BolC4t25183H' => 'bol', 'BolC5t29725H' => 'bol', 'BolC5t32053H' => 'bol', 'BolC5t32068H' => 'bol', 'BolC6t35521H' => 'bol', 'BolC7t41249H' => 'bol', 'BolC7t42289H' => 'bol', 'BolC7t42351H' => 'bol', 'BolC7t43634H' => 'bol', 'BolC7t45390H' => 'bol', 'BolC8t48417H' => 'bol', 'BolC8t48418H' => 'bol', 'BolC8t48499H' => 'bol', 'BolC9t55814H' => 'bol', 'BolC9t59514H' => 'bol', 'BraA01t00902Z' => 'bra', 'BraA01t01966Z' => 'bra', 'BraA02t08106Z' => 'bra', 'BraA03t14139Z' => 'bra', 'BraA06t27389Z' => 'bra', 'BraA08t33265Z' => 'bra', 'BraA08t33302Z' => 'bra', 'BraA09t37894Z' => 'bra', 'C01p11170' => 'bna', 'C01p25530' => 'bna', 'C01p26140' => 'bna', 'C02p18860' => 'bna', 'C02p48560' => 'bna', 'C03p61440' => 'bna', 'C04p24940' => 'bna', 'C04p36170' => 'bna', 'C05p09840' => 'bna', 'C05p33270' => 'bna', 'C05p33450' => 'bna', 'C06p11470' => 'bna', 'C06p17000' => 'bna', 'C06p24330' => 'bna', 'C07p08360' => 'bna', 'C07p17830' => 'bna', 'C07p18400' => 'bna', 'C07p30910' => 'bna', 'C07p48820' => 'bna', 'C08p52330' => 'bna', 'C09p29510' => 'bna', 'CAN.G1497.15' => 'can', 'CAN.G62.10' => 'can', 'CAN.G761.26' => 'can', 'CAN.G845.17' => 'can', 'CANSAT01G0982' => 'cansat', 'CANSAT21G2599' => 'cansat', 'CANSAT25G2969' => 'cansat', 'CARHR174150' => 'chi', 'CARHR223450' => 'chi', 'CARHR224220' => 'chi', 'Carub.0007s2387' => 'cru', 'Carub.0007s2451' => 'cru', 'Carub.0008s0053' => 'cru', 'Ca_08064_v3' => 'car', 'Ca_25800_v3' => 'car', 'CBR_g20411' => 'cbr', 'Cc00_g26000' => 'ccan', 'Cc08_g11620' => 'ccan', 'CDE02G0684' => 'cde', 'CDE05G1379' => 'cde', 'CDE06G0510' => 'cde', 'CDE06G1167' => 'cde', 'CDE06G1858' => 'cde', 'CDE06G2514' => 'cde', 'CDE11G0377' => 'cde', 'Cfa011064' => 'cfa', 'Cfa012663' => 'cfa', 'Ciclev10020747m.g' => 'ccl', 'CiPaw.12G048100' => 'cil', 'CiPaw.13G025800' => 'cil', 'CiPaw.14G020000' => 'cil', 'CiPaw.14G041200' => 'cil', 'ClCG06G002440' => 'cla', 'ClCG09G012870' => 'cla', 'COL.COLO4_10016' => 'col', 'COL.COLO4_12401' => 'col', 'Cpa.g.c46241' => 'cpa', 'Cpa.g.sc22.60' => 'cpa', 'Cpa.g.sc672.2' => 'cpa', 'Cre09.g393358' => 'cre', 'CsaV3_3G049990' => 'csa', 'CsaV3_6G008690' => 'csa', 'CsaV3_6G008700' => 'csa', 'CSS0000873' => 'camsi', 'CSS0006185' => 'camsi', 'CSS0018232' => 'camsi', 'CSS0024114' => 'camsi', 'CSS0038516' => 'camsi', 'CSS0045240' => 'camsi', 'CSS0045630' => 'camsi', 'DCAR_000646' => 'dca', 'DCAR_004601' => 'dca', 'DCAR_016119' => 'dca', 'DCAR_025063' => 'dca', 'DCAR_029471' => 'dca', 'Dinv21687' => 'din', 'Dinv28852' => 'din', 'Dinv43611' => 'din', 'Dinv44058' => 'din', 'Duzib068G1311' => 'dzi', 'Duzib084G0208' => 'dzi', 'Duzib138G1049' => 'dzi', 'Duzib205G0586' => 'dzi', 'Duzib205G0990' => 'dzi', 'Duzib268G0869' => 'dzi', 'ECA233G0654' => 'eca', 'ECA236G1942' => 'eca', 'ECA236G2353' => 'eca', 'ECA240G0458' => 'eca', 'EL10Ac1g00747' => 'bvu', 'EL10Ac5g12298' => 'bvu', 'Eucgr.D02118' => 'egr', 'FAN01G0869' => 'fan', 'FAN03G2297' => 'fan', 'FAN04G2274' => 'fan', 'FAN06G0752' => 'fan', 'FAN06G2226' => 'fan', 'FAN08G3266' => 'fan', 'FAN10G2227' => 'fan', 'FAN10G3725' => 'fan', 'FAN13G1753' => 'fan', 'FAN18G3763' => 'fan', 'FvH4_5g20020' => 'fve', 'FvH4_7g10280' => 'fve', 'Glyma.03G110300' => 'gma', 'Glyma.07G114600' => 'gma', 'Glyma.09G243200' => 'gma', 'Glyma.18G251400' => 'gma', 'Glyma.18G257400' => 'gma', 'Glyma.20G246700' => 'gma', 'Gohir.A08G029201' => 'ghi', 'Gohir.A08G138700' => 'ghi', 'Gohir.A08G138900' => 'ghi', 'Gohir.A08G166200' => 'ghi', 'Gohir.A09G196800' => 'ghi', 'Gohir.D08G039900' => 'ghi', 'Gohir.D08G160000' => 'ghi', 'Gohir.D08G160100' => 'ghi', 'Gohir.D08G185100' => 'ghi', 'Gohir.D09G191400' => 'ghi', 'Gorai.004G038700' => 'gra', 'Gorai.004G166200' => 'gra', 'Gorai.004G166300' => 'gra', 'Gorai.004G194400' => 'gra', 'Gorai.006G214200' => 'gra', 'GSVIVG01002125001' => 'vvi', 'GSVIVG01018290001' => 'vvi', 'HanXRQChr03g0092961' => 'han', 'HanXRQChr04g0106031' => 'han', 'HanXRQChr06g0168331' => 'han', 'HanXRQChr10g0290861' => 'han', 'HanXRQChr10g0305481' => 'han', 'HanXRQChr13g0423741' => 'han', 'HanXRQChr16g0510681' => 'han', 'HanXRQChr16g0530721' => 'han', 'Haze_02853' => 'cav', 'Haze_07983' => 'cav', 'Hma1.2p1_0535F.1_g173810' => 'hma', 'Hma1.2p1_2756F.1_g328020' => 'hma', 'HPP92_000442' => 'vpl', 'HPP92_003948' => 'vpl', 'HPP92_023976' => 'vpl', 'Hund11332' => 'sun', 'Hund14503' => 'sun', 'Hund17103' => 'sun', 'Hund27411' => 'sun', 'Lalb_Chr01g0021591' => 'lal', 'Lalb_Chr03g0040421' => 'lal', 'Lalb_Chr07g0195391' => 'lal', 'Lalb_Chr12g0210561' => 'lal', 'Lalb_Chr13g0290621' => 'lal', 'Lalb_Chr19g0126511' => 'lal', 'Lj1g0023152' => 'lja', 'Lj2C226G6' => 'lonja', 'Lj2g0007100' => 'lja', 'Lj3g0008598' => 'lja', 'Lj5g0008499' => 'lja', 'Lj7A548T43' => 'lonja', 'Lj7P558T34' => 'lonja', 'Lj8A275G67' => 'lonja', 'Lj9A555T37' => 'lonja', 'Lsat_1_v5_gn_3_126861' => 'lsa', 'Lsat_1_v5_gn_6_68740' => 'lsa', 'Lsat_1_v5_gn_6_94060' => 'lsa', 'Lsat_1_v5_gn_7_12161' => 'lsa', 'Lsat_1_v5_gn_9_107900' => 'lsa', 'Manes.01G086200' => 'mes', 'Manes.01G257404' => 'mes', 'Manes.01G274200' => 'mes', 'Manes.02G043300' => 'mes', 'Manes.05G055400' => 'mes', 'Mapoly0044s0032' => 'mpo', 'Mapoly0161s0012' => 'mpo', 'Mapoly0172s0023' => 'mpo', 'MBI01_g02258_MAGBIO' => 'mbi', 'MBI04_g22922_MAGBIO' => 'mbi', 'MBI07_g04745_MAGBIO' => 'mbi', 'MBI07_g09666_MAGBIO' => 'mbi', 'MD02G1213500' => 'mdo', 'MD04G1050100' => 'mdo', 'MD06G1049800' => 'mdo', 'MD07G1109500' => 'mdo', 'Medtr7g081660' => 'mtr', 'Medtr8g006960' => 'mtr', 'Medtr8g007425' => 'mtr', 'MELO3C003317.2' => 'cme', 'MELO3C022289.2' => 'cme', 'MELO3C033858.2' => 'cme', 'Migut.A01034' => 'egut', 'Migut.A01037' => 'egut', 'Migut.B01530' => 'egut', 'MSTRG.12141' => 'ama', 'MSTRG.17125' => 'ama', 'MSTRG.20686' => 'ama', 'MSTRG.4933' => 'ama', 'Nitab4.5_0000185g0150' => 'nta', 'Nitab4.5_0000500g0030' => 'nta', 'Nitab4.5_0000506g0020' => 'nta', 'Nitab4.5_0000920g0060' => 'nta', 'Nitab4.5_0002685g0040' => 'nta', 'Nitab4.5_0003456g0010' => 'nta', 'Nitab4.5_0006594g0050' => 'nta', 'Nitab4.5_0009955g0030' => 'nta', 'Nn2g14485' => 'nnu', 'Nn6g33814' => 'nnu', 'Oeu002321.1' => 'oeu', 'Oeu011237.1' => 'oeu', 'Oeu018041.1' => 'oeu', 'Oeu018042.1' => 'oeu', 'Oeu020083.3' => 'oeu', 'Oeu031157.1' => 'oeu', 'Oeu031414.1' => 'oeu', 'Oeu037449.2' => 'oeu', 'Oeu040197.1' => 'oeu', 'Oeu040683.3' => 'oeu', 'Oeu045667.1' => 'oeu', 'Oeu054073.1' => 'oeu', 'Os01g0603000' => 'osa', 'Os01g0721900' => 'osa', 'Os03g0845300' => 'osa', 'Os05g0533100' => 'osa', 'Os05g0589600' => 'osa', 'Peaxi162Scf00102g00839' => 'pax', 'Peaxi162Scf00190g01013' => 'pax', 'Peaxi162Scf00446g00611' => 'pax', 'Peaxi162Scf00475g00416' => 'pax', 'PGR031G0446' => 'pgr', 'PGR042G1184' => 'pgr', 'PGSC0003DMG400020488' => 'stu', 'PGSC0003DMG400025998' => 'stu', 'Phvul.007G003500' => 'pvu', 'Phvul.008G047300' => 'pvu', 'Phvul.010G049300' => 'pvu', 'Potri.001G153000' => 'ptr', 'Potri.002G138300' => 'ptr', 'Potri.003G081600' => 'ptr', 'Potri.014G049300' => 'ptr', 'Pp3c1_6130' => 'ppa', 'Pp3c2_30530' => 'ppa', 'Pp3c2_30970' => 'ppa', 'Pp3c7_26560' => 'ppa', 'Prupe.2G132500' => 'ppe', 'Prupe.5G060200' => 'ppe', 'Psat3g099160' => 'psa', 'Psat4g224720' => 'psa', 'PSO017G2053' => 'pso', 'PSO063G0952' => 'pso', 'PSO063G2805' => 'pso', 'PSO063G4392' => 'pso', 'PSO675G3432' => 'pso', 'PSO675G5190' => 'pso', 'PSO717G0024' => 'pso', 'PSO782G3687' => 'pso', 'PSO832G1381' => 'pso', 'QL04p030014' => 'qlo', 'QL09p049052' => 'qlo', 'QL12p009567' => 'qlo', 'RcHm_v2.0_Chr1g0348031' => 'rch', 'RcHm_v2.0_Chr7g0204831' => 'rch', 'RcHm_v2.0_Chr7g0204851' => 'rch', 'Rhsim01G0141100' => 'rsi', 'Rhsim07G0036400' => 'rsi', 'Rhsim07G0117800' => 'rsi', 'Sabra01G0122800' => 'sbr', 'Sabra02G0107900' => 'sbr', 'Sabra03G0052600' => 'sbr', 'Sabra14G0035100' => 'sbr', 'SalBow5G0459' => 'sbo', 'SalBow5G2230' => 'sbo', 'Sc01g0008170' => 'sci', 'Sc05g0001830' => 'sci', 'Sc22g0001090' => 'sci', 'Sc26g0001630' => 'sci', 'Sed0000430' => 'sed', 'Sed0001913' => 'sed', 'Sed0019221' => 'sed', 'Sed0021627' => 'sed', 'SEGI_07756' => 'sgi', 'SEGI_09917' => 'sgi', 'SEGI_34546' => 'sgi', 'SGA_v2.0_scaffold104G30211' => 'sas', 'SGA_v2.0_scaffold116G32282' => 'sas', 'SGA_v2.0_scaffold127G34016' => 'sas', 'SGA_v2.0_scaffold1333G53914' => 'sas', 'SGA_v2.0_scaffold199G41235' => 'sas', 'SGA_v2.0_scaffold4G02391' => 'sas', 'SGA_v2.0_scaffold51G18896' => 'sas', 'SGA_v2.0_scaffold52G19232' => 'sas', 'SGA_v2.0_scaffold902G53710' => 'sas', 'SMO203G0040' => 'smo', 'SMO281G0002' => 'smo', 'Solyc01g090190.3' => 'sly', 'Solyc08g007220.3' => 'sly', 'Sopen01g035980' => 'spe', 'Sopen08g003170' => 'spe', 'Sopen08g003180' => 'spe', 'Sp2g12010' => 'spa', 'Sp7g16640' => 'spa', 'Sp7g17250' => 'spa', 'TAR374G1144' => 'tar', 'TAR375G0305' => 'tar', 'TAR624G0231' => 'tar', 'TAR629G2824' => 'tar', 'TAR636G2146' => 'tar', 'THA.LOC104807918' => 'tha', 'THA.LOC104807919' => 'tha', 'THA.LOC104807920' => 'tha', 'THA.LOC104814464' => 'tha', 'Thecc.01G395600' => 'tca', 'Thecc.03G244100' => 'tca', 'Thhalv10000938m.g' => 'esa', 'Thhalv10025512m.g' => 'esa', 'Thhalv10025552m.g' => 'esa', 'TPR.G28792' => 'tpr', 'TPR.G35190' => 'tpr', 'TWI14G1246' => 'twi', 'TWI23G0570' => 'twi', 'TWI36G0339' => 'twi', 'TWI59G1071' => 'twi', 'TWI60G0908' => 'twi', 'TWI81G0055' => 'twi', 'unitig_750.g28411' => 'ugi', 'vmacro00034' => 'vma', 'vmacro13501' => 'vma', 'vmacro14134' => 'vma', 'vmacro21064' => 'vma', 'VMungo0331G1076' => 'vmu', 'VMungo0720G1714' => 'vmu', 'VMungo1215G1200' => 'vmu', 'VMungo1383G0355' => 'vmu', 'Zm00001eb136290' => 'zma', 'Zm00001eb154690' => 'zma', 'Zm00001eb154710' => 'zma', 'Zm00001eb287180' => 'zma', 'Zm00001eb345200' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001429', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001429' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001429', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '440', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001429' ) ), 'genes' => array( 'A01p09600' => 'bna', 'A01p20360' => 'bna', 'A02p30950' => 'bna', 'A03p50500' => 'bna', 'A06p45200' => 'bna', 'A08p12770' => 'bna', 'A08p13200' => 'bna', 'A09p22930' => 'bna', 'Aa31LG2G13020' => 'aar', 'Aa31LG6G260' => 'aar', 'Aa31sc89G130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3349' => 'aag', 'Actinidia02183' => 'ach', 'Actinidia10852' => 'ach', 'Actinidia12142' => 'ach', 'Actinidia12643' => 'ach', 'Actinidia18351' => 'ach', 'Actinidia21634' => 'ach', 'Actinidia23780' => 'ach', 'Actinidia25896' => 'ach', 'Actinidia27543' => 'ach', 'Actinidia31503' => 'ach', 'Actinidia33510' => 'ach', 'Ah.05g177950' => 'amhyb', 'Ah.12g054140' => 'amhyb', 'Ah.12g054150' => 'amhyb', 'AL7G37100' => 'aly', 'AL7G37810' => 'aly', 'AL8G10820' => 'aly', 'Aqoxy3G02708' => 'aox', 'Aqoxy7G01250' => 'aox', 'arahy.Tifrunner.gnm1.ann1.180UYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L4YH4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LE7D6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HL8AF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C7EL2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0G6H5' => 'arhy', 'AT4G16830' => 'ath', 'AT4G17520' => 'ath', 'AT5G47210' => 'ath', 'ATR0057G051' => 'atr', 'ATR0561G146' => 'atr', 'ATR0705G140' => 'atr', 'Atru.chr5.120' => 'acertr', 'Atru.chr9.1239' => 'acertr', 'AUR62007145' => 'cqu', 'AUR62013759' => 'cqu', 'AUR62018866' => 'cqu', 'AUR62023395' => 'cqu', 'BcaB04g18394' => 'bca', 'BcaB04g18425' => 'bca', 'BcaB07g30786' => 'bca', 'BcaC01g00266' => 'bca', 'BcaC02g09824' => 'bca', 'BcaC02g10806' => 'bca', 'BcaC03g16950' => 'bca', 'BcaC04g19353' => 'bca', 'BcaC04g21639' => 'bca', 'BcaC06g31406' => 'bca', 'BcaC06g33561' => 'bca', 'BcaC06g33563' => 'bca', 'BcaC06g34275' => 'bca', 'BcaC06g35280' => 'bca', 'BcaC07g38027' => 'bca', 'BcaC07g38085' => 'bca', 'BcaC07g42174' => 'bca', 'BcaC08g44282' => 'bca', 'BcaC09g50427' => 'bca', 'BcaC09g51634' => 'bca', 'BcaNung00084' => 'bca', 'BcaNung00142' => 'bca', 'BcaNung03458' => 'bca', 'BolC1t01082H' => 'bol', 'BolC1t02249H' => 'bol', 'BolC1t02503H' => 'bol', 'BolC1t02558H' => 'bol', 'BolC2t08027H' => 'bol', 'BolC2t10889H' => 'bol', 'BolC3t17215H' => 'bol', 'BolC3t20828H' => 'bol', 'BolC4t23994H' => 'bol', 'BolC4t25183H' => 'bol', 'BolC5t29725H' => 'bol', 'BolC5t32053H' => 'bol', 'BolC5t32068H' => 'bol', 'BolC6t35521H' => 'bol', 'BolC7t41249H' => 'bol', 'BolC7t42289H' => 'bol', 'BolC7t42351H' => 'bol', 'BolC7t43634H' => 'bol', 'BolC7t45390H' => 'bol', 'BolC8t48417H' => 'bol', 'BolC8t48418H' => 'bol', 'BolC8t48499H' => 'bol', 'BolC9t55814H' => 'bol', 'BolC9t59514H' => 'bol', 'BraA01t00902Z' => 'bra', 'BraA01t01966Z' => 'bra', 'BraA02t08106Z' => 'bra', 'BraA03t14139Z' => 'bra', 'BraA06t27389Z' => 'bra', 'BraA08t33265Z' => 'bra', 'BraA08t33302Z' => 'bra', 'BraA09t37894Z' => 'bra', 'C01p11170' => 'bna', 'C01p25530' => 'bna', 'C01p26140' => 'bna', 'C02p18860' => 'bna', 'C02p48560' => 'bna', 'C03p61440' => 'bna', 'C04p24940' => 'bna', 'C04p36170' => 'bna', 'C05p09840' => 'bna', 'C05p33270' => 'bna', 'C05p33450' => 'bna', 'C06p11470' => 'bna', 'C06p17000' => 'bna', 'C06p24330' => 'bna', 'C07p08360' => 'bna', 'C07p17830' => 'bna', 'C07p18400' => 'bna', 'C07p30910' => 'bna', 'C07p48820' => 'bna', 'C08p52330' => 'bna', 'C09p29510' => 'bna', 'CAN.G1497.15' => 'can', 'CAN.G62.10' => 'can', 'CAN.G761.26' => 'can', 'CAN.G845.17' => 'can', 'CANSAT01G0982' => 'cansat', 'CANSAT21G2599' => 'cansat', 'CANSAT25G2969' => 'cansat', 'CARHR174150' => 'chi', 'CARHR223450' => 'chi', 'CARHR224220' => 'chi', 'Carub.0007s2387' => 'cru', 'Carub.0007s2451' => 'cru', 'Carub.0008s0053' => 'cru', 'Ca_08064_v3' => 'car', 'Ca_25800_v3' => 'car', 'CBR_g20411' => 'cbr', 'Cc00_g26000' => 'ccan', 'Cc08_g11620' => 'ccan', 'CDE02G0684' => 'cde', 'CDE05G1379' => 'cde', 'CDE06G0510' => 'cde', 'CDE06G1167' => 'cde', 'CDE06G1858' => 'cde', 'CDE06G2514' => 'cde', 'CDE11G0377' => 'cde', 'Cfa011064' => 'cfa', 'Cfa012663' => 'cfa', 'Ciclev10020747m.g' => 'ccl', 'CiPaw.12G048100' => 'cil', 'CiPaw.13G025800' => 'cil', 'CiPaw.14G020000' => 'cil', 'CiPaw.14G041200' => 'cil', 'ClCG06G002440' => 'cla', 'ClCG09G012870' => 'cla', 'COL.COLO4_10016' => 'col', 'COL.COLO4_12401' => 'col', 'Cpa.g.c46241' => 'cpa', 'Cpa.g.sc22.60' => 'cpa', 'Cpa.g.sc672.2' => 'cpa', 'Cre09.g393358' => 'cre', 'CsaV3_3G049990' => 'csa', 'CsaV3_6G008690' => 'csa', 'CsaV3_6G008700' => 'csa', 'CSS0000873' => 'camsi', 'CSS0006185' => 'camsi', 'CSS0018232' => 'camsi', 'CSS0024114' => 'camsi', 'CSS0038516' => 'camsi', 'CSS0045240' => 'camsi', 'CSS0045630' => 'camsi', 'DCAR_000646' => 'dca', 'DCAR_004601' => 'dca', 'DCAR_016119' => 'dca', 'DCAR_025063' => 'dca', 'DCAR_029471' => 'dca', 'Dinv21687' => 'din', 'Dinv28852' => 'din', 'Dinv43611' => 'din', 'Dinv44058' => 'din', 'Duzib068G1311' => 'dzi', 'Duzib084G0208' => 'dzi', 'Duzib138G1049' => 'dzi', 'Duzib205G0586' => 'dzi', 'Duzib205G0990' => 'dzi', 'Duzib268G0869' => 'dzi', 'ECA233G0654' => 'eca', 'ECA236G1942' => 'eca', 'ECA236G2353' => 'eca', 'ECA240G0458' => 'eca', 'EL10Ac1g00747' => 'bvu', 'EL10Ac5g12298' => 'bvu', 'Eucgr.D02118' => 'egr', 'FAN01G0869' => 'fan', 'FAN03G2297' => 'fan', 'FAN04G2274' => 'fan', 'FAN06G0752' => 'fan', 'FAN06G2226' => 'fan', 'FAN08G3266' => 'fan', 'FAN10G2227' => 'fan', 'FAN10G3725' => 'fan', 'FAN13G1753' => 'fan', 'FAN18G3763' => 'fan', 'FvH4_5g20020' => 'fve', 'FvH4_7g10280' => 'fve', 'Glyma.03G110300' => 'gma', 'Glyma.07G114600' => 'gma', 'Glyma.09G243200' => 'gma', 'Glyma.18G251400' => 'gma', 'Glyma.18G257400' => 'gma', 'Glyma.20G246700' => 'gma', 'Gohir.A08G029201' => 'ghi', 'Gohir.A08G138700' => 'ghi', 'Gohir.A08G138900' => 'ghi', 'Gohir.A08G166200' => 'ghi', 'Gohir.A09G196800' => 'ghi', 'Gohir.D08G039900' => 'ghi', 'Gohir.D08G160000' => 'ghi', 'Gohir.D08G160100' => 'ghi', 'Gohir.D08G185100' => 'ghi', 'Gohir.D09G191400' => 'ghi', 'Gorai.004G038700' => 'gra', 'Gorai.004G166200' => 'gra', 'Gorai.004G166300' => 'gra', 'Gorai.004G194400' => 'gra', 'Gorai.006G214200' => 'gra', 'GSVIVG01002125001' => 'vvi', 'GSVIVG01018290001' => 'vvi', 'HanXRQChr03g0092961' => 'han', 'HanXRQChr04g0106031' => 'han', 'HanXRQChr06g0168331' => 'han', 'HanXRQChr10g0290861' => 'han', 'HanXRQChr10g0305481' => 'han', 'HanXRQChr13g0423741' => 'han', 'HanXRQChr16g0510681' => 'han', 'HanXRQChr16g0530721' => 'han', 'Haze_02853' => 'cav', 'Haze_07983' => 'cav', 'Hma1.2p1_0535F.1_g173810' => 'hma', 'Hma1.2p1_2756F.1_g328020' => 'hma', 'HPP92_000442' => 'vpl', 'HPP92_003948' => 'vpl', 'HPP92_023976' => 'vpl', 'Hund11332' => 'sun', 'Hund14503' => 'sun', 'Hund17103' => 'sun', 'Hund27411' => 'sun', 'Lalb_Chr01g0021591' => 'lal', 'Lalb_Chr03g0040421' => 'lal', 'Lalb_Chr07g0195391' => 'lal', 'Lalb_Chr12g0210561' => 'lal', 'Lalb_Chr13g0290621' => 'lal', 'Lalb_Chr19g0126511' => 'lal', 'Lj1g0023152' => 'lja', 'Lj2C226G6' => 'lonja', 'Lj2g0007100' => 'lja', 'Lj3g0008598' => 'lja', 'Lj5g0008499' => 'lja', 'Lj7A548T43' => 'lonja', 'Lj7P558T34' => 'lonja', 'Lj8A275G67' => 'lonja', 'Lj9A555T37' => 'lonja', 'Lsat_1_v5_gn_3_126861' => 'lsa', 'Lsat_1_v5_gn_6_68740' => 'lsa', 'Lsat_1_v5_gn_6_94060' => 'lsa', 'Lsat_1_v5_gn_7_12161' => 'lsa', 'Lsat_1_v5_gn_9_107900' => 'lsa', 'Manes.01G086200' => 'mes', 'Manes.01G257404' => 'mes', 'Manes.01G274200' => 'mes', 'Manes.02G043300' => 'mes', 'Manes.05G055400' => 'mes', 'Mapoly0044s0032' => 'mpo', 'Mapoly0161s0012' => 'mpo', 'Mapoly0172s0023' => 'mpo', 'MBI01_g02258_MAGBIO' => 'mbi', 'MBI04_g22922_MAGBIO' => 'mbi', 'MBI07_g04745_MAGBIO' => 'mbi', 'MBI07_g09666_MAGBIO' => 'mbi', 'MD02G1213500' => 'mdo', 'MD04G1050100' => 'mdo', 'MD06G1049800' => 'mdo', 'MD07G1109500' => 'mdo', 'Medtr7g081660' => 'mtr', 'Medtr8g006960' => 'mtr', 'Medtr8g007425' => 'mtr', 'MELO3C003317.2' => 'cme', 'MELO3C022289.2' => 'cme', 'MELO3C033858.2' => 'cme', 'Migut.A01034' => 'egut', 'Migut.A01037' => 'egut', 'Migut.B01530' => 'egut', 'MSTRG.12141' => 'ama', 'MSTRG.17125' => 'ama', 'MSTRG.20686' => 'ama', 'MSTRG.4933' => 'ama', 'Nitab4.5_0000185g0150' => 'nta', 'Nitab4.5_0000500g0030' => 'nta', 'Nitab4.5_0000506g0020' => 'nta', 'Nitab4.5_0000920g0060' => 'nta', 'Nitab4.5_0002685g0040' => 'nta', 'Nitab4.5_0003456g0010' => 'nta', 'Nitab4.5_0006594g0050' => 'nta', 'Nitab4.5_0009955g0030' => 'nta', 'Nn2g14485' => 'nnu', 'Nn6g33814' => 'nnu', 'Oeu002321.1' => 'oeu', 'Oeu011237.1' => 'oeu', 'Oeu018041.1' => 'oeu', 'Oeu018042.1' => 'oeu', 'Oeu020083.3' => 'oeu', 'Oeu031157.1' => 'oeu', 'Oeu031414.1' => 'oeu', 'Oeu037449.2' => 'oeu', 'Oeu040197.1' => 'oeu', 'Oeu040683.3' => 'oeu', 'Oeu045667.1' => 'oeu', 'Oeu054073.1' => 'oeu', 'Os01g0603000' => 'osa', 'Os01g0721900' => 'osa', 'Os03g0845300' => 'osa', 'Os05g0533100' => 'osa', 'Os05g0589600' => 'osa', 'Peaxi162Scf00102g00839' => 'pax', 'Peaxi162Scf00190g01013' => 'pax', 'Peaxi162Scf00446g00611' => 'pax', 'Peaxi162Scf00475g00416' => 'pax', 'PGR031G0446' => 'pgr', 'PGR042G1184' => 'pgr', 'PGSC0003DMG400020488' => 'stu', 'PGSC0003DMG400025998' => 'stu', 'Phvul.007G003500' => 'pvu', 'Phvul.008G047300' => 'pvu', 'Phvul.010G049300' => 'pvu', 'Potri.001G153000' => 'ptr', 'Potri.002G138300' => 'ptr', 'Potri.003G081600' => 'ptr', 'Potri.014G049300' => 'ptr', 'Pp3c1_6130' => 'ppa', 'Pp3c2_30530' => 'ppa', 'Pp3c2_30970' => 'ppa', 'Pp3c7_26560' => 'ppa', 'Prupe.2G132500' => 'ppe', 'Prupe.5G060200' => 'ppe', 'Psat3g099160' => 'psa', 'Psat4g224720' => 'psa', 'PSO017G2053' => 'pso', 'PSO063G0952' => 'pso', 'PSO063G2805' => 'pso', 'PSO063G4392' => 'pso', 'PSO675G3432' => 'pso', 'PSO675G5190' => 'pso', 'PSO717G0024' => 'pso', 'PSO782G3687' => 'pso', 'PSO832G1381' => 'pso', 'QL04p030014' => 'qlo', 'QL09p049052' => 'qlo', 'QL12p009567' => 'qlo', 'RcHm_v2.0_Chr1g0348031' => 'rch', 'RcHm_v2.0_Chr7g0204831' => 'rch', 'RcHm_v2.0_Chr7g0204851' => 'rch', 'Rhsim01G0141100' => 'rsi', 'Rhsim07G0036400' => 'rsi', 'Rhsim07G0117800' => 'rsi', 'Sabra01G0122800' => 'sbr', 'Sabra02G0107900' => 'sbr', 'Sabra03G0052600' => 'sbr', 'Sabra14G0035100' => 'sbr', 'SalBow5G0459' => 'sbo', 'SalBow5G2230' => 'sbo', 'Sc01g0008170' => 'sci', 'Sc05g0001830' => 'sci', 'Sc22g0001090' => 'sci', 'Sc26g0001630' => 'sci', 'Sed0000430' => 'sed', 'Sed0001913' => 'sed', 'Sed0019221' => 'sed', 'Sed0021627' => 'sed', 'SEGI_07756' => 'sgi', 'SEGI_09917' => 'sgi', 'SEGI_34546' => 'sgi', 'SGA_v2.0_scaffold104G30211' => 'sas', 'SGA_v2.0_scaffold116G32282' => 'sas', 'SGA_v2.0_scaffold127G34016' => 'sas', 'SGA_v2.0_scaffold1333G53914' => 'sas', 'SGA_v2.0_scaffold199G41235' => 'sas', 'SGA_v2.0_scaffold4G02391' => 'sas', 'SGA_v2.0_scaffold51G18896' => 'sas', 'SGA_v2.0_scaffold52G19232' => 'sas', 'SGA_v2.0_scaffold902G53710' => 'sas', 'SMO203G0040' => 'smo', 'SMO281G0002' => 'smo', 'Solyc01g090190.3' => 'sly', 'Solyc08g007220.3' => 'sly', 'Sopen01g035980' => 'spe', 'Sopen08g003170' => 'spe', 'Sopen08g003180' => 'spe', 'Sp2g12010' => 'spa', 'Sp7g16640' => 'spa', 'Sp7g17250' => 'spa', 'TAR374G1144' => 'tar', 'TAR375G0305' => 'tar', 'TAR624G0231' => 'tar', 'TAR629G2824' => 'tar', 'TAR636G2146' => 'tar', 'THA.LOC104807918' => 'tha', 'THA.LOC104807919' => 'tha', 'THA.LOC104807920' => 'tha', 'THA.LOC104814464' => 'tha', 'Thecc.01G395600' => 'tca', 'Thecc.03G244100' => 'tca', 'Thhalv10000938m.g' => 'esa', 'Thhalv10025512m.g' => 'esa', 'Thhalv10025552m.g' => 'esa', 'TPR.G28792' => 'tpr', 'TPR.G35190' => 'tpr', 'TWI14G1246' => 'twi', 'TWI23G0570' => 'twi', 'TWI36G0339' => 'twi', 'TWI59G1071' => 'twi', 'TWI60G0908' => 'twi', 'TWI81G0055' => 'twi', 'unitig_750.g28411' => 'ugi', 'vmacro00034' => 'vma', 'vmacro13501' => 'vma', 'vmacro14134' => 'vma', 'vmacro21064' => 'vma', 'VMungo0331G1076' => 'vmu', 'VMungo0720G1714' => 'vmu', 'VMungo1215G1200' => 'vmu', 'VMungo1383G0355' => 'vmu', 'Zm00001eb136290' => 'zma', 'Zm00001eb154690' => 'zma', 'Zm00001eb154710' => 'zma', 'Zm00001eb287180' => 'zma', 'Zm00001eb345200' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001429' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001429' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001429' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001429' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151