Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.6e-269 932.2 459 100.0
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.4e-264 914.1 474 95.8
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.7e-242 840.9 551 79.5
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 3.2e-238 828.2 564 76.8
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 5.2e-233 810.8 564 74.8
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.1e-229 798.9 564 73.8
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.0e-228 796.6 564 73.8
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 3.9e-228 794.7 562 73.0
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 1.5e-227 792.7 564 72.9
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 2.5e-227 792.0 563 73.0
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 4.3e-227 791.2 563 73.4
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.2e-226 789.6 564 73.2
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 1.2e-226 789.6 563 73.0
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.2e-226 789.6 563 73.0
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.6e-226 789.3 564 72.7
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 2.1e-226 788.9 563 72.8
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 2.1e-226 788.9 565 72.4
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.6e-226 788.1 560 73.4
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 4.7e-226 787.7 564 72.9
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 6.2e-226 787.3 556 73.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.4e-225 786.2 563 72.5
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.4e-225 786.2 565 72.9
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 1.4e-225 786.2 564 72.5
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 1.8e-225 785.8 562 72.4
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 3.1e-225 785.0 565 72.7
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.2e-225 784.3 565 72.7
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.2e-225 784.3 562 72.2
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 6.8e-225 783.9 562 72.4
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 6.8e-225 783.9 563 72.1
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 8.9e-225 783.5 563 73.0
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 8.9e-225 783.5 564 72.2
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.2e-224 783.1 563 71.9
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 1.5e-224 782.7 555 73.2
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.5e-224 782.7 564 72.0
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.5e-224 782.7 566 72.4
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.5e-224 782.7 564 72.5
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 2.6e-224 781.9 565 72.0
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 2.6e-224 781.9 565 72.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 3.4e-224 781.6 567 71.8
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 3.4e-224 781.6 565 72.7
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 4.4e-224 781.2 559 72.6
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.8e-224 780.8 568 72.2
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 5.8e-224 780.8 563 72.1
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.8e-224 780.8 562 72.2
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 7.6e-224 780.4 565 72.6
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.3e-223 779.6 566 71.9
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.3e-223 779.6 566 71.7
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.3e-223 779.6 566 71.7
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.7e-223 779.2 563 72.3
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 1.7e-223 779.2 567 71.6
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.7e-223 779.2 562 72.8
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 2.2e-223 778.9 564 71.8
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.9e-223 778.5 566 72.1
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.9e-223 778.5 566 72.1
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.8e-223 778.1 566 71.9
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 4.9e-223 777.7 564 71.8
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 4.9e-223 777.7 566 71.7
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 6.4e-223 777.3 566 71.6
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 8.4e-223 776.9 566 71.6
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 8.4e-223 776.9 566 71.6
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 8.4e-223 776.9 566 71.9
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 8.4e-223 776.9 562 71.7
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.4e-222 776.2 563 71.6
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 1.4e-222 776.2 564 71.3
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 1.9e-222 775.8 564 71.1
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-222 775.4 565 71.7
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 3.2e-222 775.0 566 71.4
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.2e-221 773.1 563 71.2
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 2.7e-221 771.9 563 71.0
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.7e-221 771.9 559 71.6
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 3.5e-221 771.5 561 71.5
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 3.5e-221 771.5 560 71.2
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 6.0e-221 770.8 563 71.2
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 6.0e-221 770.8 558 71.7
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 6.0e-221 770.8 562 71.0
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 7.8e-221 770.4 568 71.5
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.3e-220 769.6 564 70.7
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.3e-220 769.6 563 70.7
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 8.7e-220 766.9 566 70.8
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 8.7e-220 766.9 416 90.1
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 8.7e-220 766.9 556 71.4
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.5e-219 766.1 597 68.7
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 2.5e-219 765.4 408 91.4
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 3.3e-219 765.0 416 89.7
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 3.3e-219 765.0 553 71.8
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 1.3e-218 763.1 416 90.1
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.3e-218 763.1 556 70.9
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.1e-218 762.3 564 70.6
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 3.6e-218 761.5 617 65.3
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 4.0e-217 758.1 408 90.4
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 6.9e-217 757.3 594 68.2
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 2.0e-216 755.7 416 88.5
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 7.6e-216 753.8 599 66.9
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 7.6e-216 753.8 564 70.6
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 7.1e-214 747.3 556 68.3
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.3e-211 738.4 572 69.1
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.6e-210 736.1 546 70.7
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-209 733.4 553 67.8
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-209 733.0 553 67.8
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.8e-209 732.6 562 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.5e-208 729.6 414 84.1
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 4.2e-190 668.3 496 70.8
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 3.9e-188 661.8 416 76.7
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 5.1e-188 661.4 331 95.8
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.4e-177 626.7 566 61.7
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.9e-174 616.3 507 63.1
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 6.1e-173 611.3 419 71.8
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.6e-168 596.7 312 91.0
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.5e-163 580.1 369 79.9
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 9.7e-163 577.4 529 62.6
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 8.0e-157 557.8 464 65.3
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.1e-150 537.3 416 69.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.8e-149 532.7 416 69.0
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 5.7e-147 525.0 416 68.0
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.9e-144 515.0 262 93.5
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.5e-139 498.0 502 54.4
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 8.3e-130 468.0 462 57.8
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 3.5e-128 462.6 389 64.8
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.1e-121 439.1 267 79.8
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.3e-119 434.1 418 58.6
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-119 434.1 273 76.2
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.9e-114 416.4 287 75.3
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 6.0e-112 408.7 350 62.0
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 8.6e-111 404.8 506 49.2
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.8e-98 362.8 406 52.0
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.1e-96 357.1 391 52.4
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.1e-96 357.1 214 80.4
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.4e-92 344.4 196 85.2
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.6e-91 340.1 167 97.6
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.1e-85 320.5 160 94.4
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.8e-84 317.4 154 96.8
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.8e-83 312.4 458 45.0
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 1.4e-81 307.8 158 93.0
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.1e-81 305.4 168 85.7
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-79 301.6 260 62.7
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.1e-70 271.6 140 92.9
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.4e-68 264.6 300 53.0
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.8e-63 247.7 261 55.6
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-59 235.0 282 51.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-55 220.3 185 64.3
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.5e-41 172.9 258 44.6
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.9e-27 126.3 237 39.7
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 4.4e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 3.5e-19 100.5 58 84.5
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 6.0e-19 99.8 52 90.4
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.6e-18 95.9 53 84.9
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.8e-15 88.2 47 89.4
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 8.9e-15 85.9 44 86.4
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.2e-14 85.5 88 60.2
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-14 84.7 59 71.2
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-10 72.0 62 62.9
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.5e-09 68.6 57 61.4
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.4e-06 57.4 62 50.0
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 7.5e-06 56.2 64 53.1
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 7.5e-06 56.2 58 55.2


User provided reference genes

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