Gene: Pp3c21_15940

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c21_15940
  • Transcript Identifier Pp3c21_15940V3.1
  • Gene Type Coding gene
  • Location Chr21 : 10100077-10103814 : positive

Gene Family Information

  • ID HOM05D004180
  • #Genes/#Species 169/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c21_15940V3.1
  • pacid 32916443
  • alias Pp1s167_46V6
  • uniprot A0A2K1IS67

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002098
ISO
PLAZA Integrative OrthologytRNA wobble uridine modification AT5G50320
GO:2000025
ISO
PLAZA Integrative Orthologyregulation of leaf formation AT5G50320
GO:0090708
ISO
PLAZA Integrative Orthologyspecification of plant organ axis polarity AT5G50320
GO:0010928
ISO
PLAZA Integrative Orthologyregulation of auxin mediated signaling pathway AT5G50320
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT5G50320
GO:0035265
ISO
PLAZA Integrative Orthologyorgan growth AT5G50320
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT5G50320
GO:0002926
IBA
GOA DatabasetRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008080
ISO
PLAZA Homology (enrichment)N-acetyltransferase activity HOM05D004180
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016746
IEA
GOA Databaseacyltransferase activity
GO:0000049
IEA
GOA DatabasetRNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G50320
GO:0000791
ISO
PLAZA Integrative Orthologyeuchromatin AT5G50320
GO:0005737
IBA
GOA Databasecytoplasm
GO:0033588
IBA
GOA Databaseelongator holoenzyme complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034687 Elongator complex protein 3-like
IPR032432 Radical SAM, C-terminal extension
IPR039661 ELP3/YhcC
IPR007197 Radical SAM
IPR006638 Elp3/MiaB/NifB
Mapman id Description
15.3.5.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP3