Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 0.0e+00 1343.6 682 100.0
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 6.7e-285 983.8 763 71.0
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 9.1e-282 973.4 762 69.2
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 2.6e-281 971.8 762 69.0
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 1.7e-272 942.6 760 68.2
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 2.6e-268 928.7 763 67.0
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.2e-238 830.1 690 65.2
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 3.6e-238 828.6 761 59.7
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 3.6e-238 828.6 734 62.7
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.4e-237 826.6 757 60.5
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 4.0e-237 825.1 754 60.3
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 1.2e-236 823.5 748 60.4
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 2.2e-235 819.3 736 62.2
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 2.7e-233 812.4 747 61.2
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 3.5e-233 812.0 751 60.1
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 9.5e-231 803.9 755 60.3
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.1e-229 800.4 751 58.7
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 9.8e-228 793.9 760 59.2
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 3.5e-225 785.4 738 59.8
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 7.8e-225 784.3 738 59.6
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.0e-224 783.9 756 59.3
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.3e-224 782.7 740 59.2
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 3.9e-224 781.9 753 59.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 1.5e-223 780.0 774 57.4
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 1.9e-223 779.6 756 56.6
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.9e-223 779.6 767 56.2
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 2.5e-223 779.2 756 58.7
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 4.3e-223 778.5 751 58.2
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 5.6e-223 778.1 763 57.1
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.1e-221 773.9 752 58.1
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.5e-220 770.0 767 57.4
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 1.5e-220 770.0 726 59.8
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 5.8e-220 768.1 709 60.4
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 9.9e-220 767.3 766 55.9
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 1.3e-219 766.9 766 56.9
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 2.9e-219 765.8 751 57.3
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 3.2e-218 762.3 732 59.2
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.1e-217 759.6 744 56.9
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.1e-217 759.6 744 56.9
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 1.3e-216 756.9 746 56.6
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 2.3e-216 756.1 761 56.2
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 2.3e-216 756.1 761 55.8
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 4.3e-215 751.9 740 56.2
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.2e-214 750.4 710 58.7
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-214 750.4 754 54.8
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 1.6e-214 750.0 735 57.0
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.1e-214 749.6 707 58.6
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 3.6e-214 748.8 779 54.9
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 3.6e-214 748.8 758 55.7
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 6.2e-214 748.0 733 57.0
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.8e-213 746.5 705 57.7
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 3.1e-213 745.7 750 56.7
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 5.2e-213 745.0 697 58.2
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 2.4e-210 736.1 743 57.1
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 3.2e-210 735.7 757 55.9
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 4.6e-209 731.9 746 55.9
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 1.0e-208 730.7 744 54.7
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 3.9e-208 728.8 774 53.6
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 3.9e-208 728.8 731 56.8
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.1e-207 727.2 754 55.6
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 3.3e-207 725.7 755 54.6
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 7.3e-207 724.5 802 52.4
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 6.2e-206 721.5 744 55.4
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 8.1e-206 721.1 692 57.8
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 3.4e-204 715.7 743 54.6
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 2.1e-201 706.4 723 56.2
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.9e-199 699.9 757 55.0
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 3.8e-195 685.6 733 53.9
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 4.9e-195 685.3 717 54.4
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 3.2e-194 682.6 1009 43.2
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 9.3e-194 681.0 715 54.7
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 7.9e-193 677.9 715 53.8
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.8e-192 676.8 707 54.2
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 2.3e-192 676.4 719 53.7
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 3.0e-192 676.0 712 54.4
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 6.7e-192 674.9 724 54.0
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.5e-191 673.7 713 53.7
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 4.3e-191 672.2 710 54.4
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 3.7e-190 669.1 724 53.6
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.1e-189 667.5 740 51.4
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.8e-189 666.8 758 51.6
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 6.9e-189 664.8 529 66.5
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.6e-185 653.7 725 53.4
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.3e-179 634.0 731 52.1
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.7e-179 633.6 781 48.9
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.1e-177 626.7 694 52.2
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 2.7e-177 626.3 742 48.2
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 7.9e-177 624.8 693 51.8
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 2.5e-175 619.8 691 51.4
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 3.7e-174 615.9 857 44.0
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 5.9e-172 608.6 966 41.4
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.1e-169 600.1 716 50.0
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 5.1e-168 595.5 606 56.1
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 5.9e-164 582.0 651 52.7
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 5.5e-162 575.5 767 46.3
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.8e-160 568.2 529 59.4
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 6.3e-158 562.0 448 66.3
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 3.4e-143 513.1 489 58.9
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 5.9e-132 475.7 700 42.6
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 8.6e-131 471.9 622 48.1
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 2.3e-123 447.2 751 39.8
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 3.3e-122 443.4 791 38.4
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.9e-114 417.5 677 41.4
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.5e-111 405.6 482 46.1
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.5e-103 381.3 490 43.1
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.7e-102 376.7 479 44.5
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.1e-100 370.9 479 44.1
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.3e-99 368.2 659 39.3
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.6e-95 354.0 328 60.1
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 9.0e-88 328.9 386 48.7
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.9e-86 323.9 267 65.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 2.9e-86 323.9 316 57.3
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.1e-82 312.0 259 63.3
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 6.9e-80 302.8 387 48.3
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 6.2e-73 279.6 189 71.4
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.8e-72 278.1 226 65.5
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.5e-66 258.5 280 53.9
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 4.8e-65 253.4 702 29.6
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 2.0e-63 248.1 160 76.2
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.9e-54 217.6 291 40.2
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.1e-48 199.1 284 49.6
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 2.0e-42 178.3 303 41.3
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 7.5e-34 149.8 172 53.5
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 4.1e-32 144.1 100 67.0
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 1.3e-30 139.0 692 24.6
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.4e-26 124.4 109 55.0
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.8e-25 121.3 120 53.3
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.9e-23 113.6 111 55.9
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 7.2e-21 106.7 140 50.0
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.2e-20 105.9 65 72.3
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.6e-20 105.5 128 46.1
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 3.4e-18 97.8 78 64.1
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 6.6e-14 83.6 75 61.3
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.1e-12 78.6 75 52.0
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.0e-11 76.3 167 33.5
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 2.2e-09 68.6 54 61.1
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 7.0e-08 63.5 167 24.6
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 9.2e-08 63.2 89 31.5
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.6e-07 62.4 91 35.2
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.0e-06 59.7 51 54.9
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 1.3e-06 59.3 51 52.9


User provided reference genes

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