Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.4e-164 582.8 287 100.0
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 4.6e-126 454.9 281 84.0
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.1e-114 415.6 285 78.2
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.1e-111 407.1 285 75.1
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 3.2e-111 405.6 283 74.9
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 7.3e-108 394.4 284 75.0
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 8.1e-107 391.0 292 72.9
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.1e-106 389.0 278 74.1
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 6.8e-106 387.9 283 73.1
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 8.9e-106 387.5 293 70.6
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 5.8e-105 384.8 283 72.8
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 2.2e-104 382.9 283 71.0
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 8.4e-104 380.9 287 71.8
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.1e-103 380.6 283 72.1
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.9e-103 379.8 293 68.3
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.9e-103 379.8 293 68.3
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 3.2e-103 379.0 283 71.7
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 4.2e-103 378.6 283 71.4
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.2e-103 378.6 281 70.5
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 5.4e-103 378.3 293 71.3
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 9.2e-103 377.5 283 70.0
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 9.2e-103 377.5 286 69.9
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 2.7e-102 375.9 293 69.6
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 6.0e-102 374.8 284 70.4
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 6.0e-102 374.8 283 70.3
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 7.8e-102 374.4 285 69.5
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.0e-101 374.0 282 69.1
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.3e-101 372.9 286 69.6
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.0e-101 372.5 286 68.9
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 3.9e-101 372.1 286 69.2
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 8.7e-101 370.9 282 69.1
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 8.7e-101 370.9 281 69.4
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.1e-100 370.5 284 69.4
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-100 370.5 283 70.0
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 1.1e-100 370.5 281 69.0
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 2.5e-100 369.4 289 68.2
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 4.3e-100 368.6 284 69.0
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 4.3e-100 368.6 286 68.2
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 5.6e-100 368.2 284 69.7
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 5.6e-100 368.2 289 69.6
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 7.3e-100 367.9 286 67.5
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 7.3e-100 367.9 283 69.3
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 9.6e-100 367.5 281 68.3
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.2e-99 367.1 284 69.0
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.6e-99 366.7 284 70.1
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.6e-99 366.7 284 68.3
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.6e-99 366.7 286 68.2
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 2.1e-99 366.3 285 67.0
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.7e-99 365.2 285 68.4
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 6.2e-99 364.8 283 67.8
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 6.2e-99 364.8 283 66.8
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.1e-98 364.0 282 68.4
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.4e-98 363.6 284 68.0
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 1.4e-98 363.6 280 66.4
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 3.1e-98 362.5 284 68.3
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 3.1e-98 362.5 283 67.5
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 4.0e-98 362.1 282 67.4
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.3e-98 361.7 284 68.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 9.0e-98 360.9 283 68.9
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.2e-97 360.5 284 68.7
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.2e-97 360.5 285 68.1
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 1.5e-97 360.1 284 68.0
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.5e-97 360.1 282 68.1
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.0e-97 359.8 282 68.1
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 3.4e-97 359.0 283 67.8
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 5.8e-97 358.2 288 65.6
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 7.6e-97 357.8 284 67.6
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.6e-97 357.8 284 67.6
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 9.9e-97 357.5 284 67.3
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.2e-96 356.3 284 66.9
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 3.8e-96 355.5 282 67.0
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 4.9e-96 355.1 281 68.3
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.4e-95 352.8 285 68.1
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 3.2e-95 352.4 284 68.0
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.2e-95 352.4 284 67.3
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.4e-95 351.7 284 66.9
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 5.4e-95 351.7 290 66.6
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 9.3e-95 350.9 282 65.6
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 2.1e-94 349.7 282 66.0
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.7e-94 349.4 295 65.4
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 4.6e-94 348.6 296 64.5
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 6.0e-94 348.2 282 64.9
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.7e-93 346.7 290 63.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.7e-93 346.7 279 65.2
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.7e-93 346.7 279 65.2
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 3.0e-93 345.9 286 66.8
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 3.9e-93 345.5 329 60.2
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 3.9e-93 345.5 285 64.2
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 6.6e-93 344.7 283 65.7
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 8.7e-93 344.4 268 68.7
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.9e-92 343.2 285 65.6
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 4.3e-92 342.0 279 63.4
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 9.6e-92 340.9 281 65.1
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.1e-91 339.7 280 65.0
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.1e-90 337.4 287 62.7
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.8e-90 336.7 305 60.3
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.0e-89 333.2 285 63.5
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.1e-87 327.4 283 61.5
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.3e-87 324.3 287 61.3
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.6e-86 323.6 299 58.2
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.1e-86 323.2 281 61.6
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.7e-86 322.8 242 70.7
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-85 320.5 306 60.8
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-85 320.5 306 60.8
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.9e-84 316.6 308 61.0
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.9e-84 316.6 280 61.8
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 7.4e-84 314.7 286 58.4
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.3e-83 313.9 299 61.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.8e-83 312.8 299 61.2
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 4.0e-82 308.9 275 60.4
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 9.0e-82 307.8 299 59.5
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 3.8e-80 302.4 300 57.7
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.2e-78 297.4 285 58.6
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.1e-75 286.6 282 57.4
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 4.0e-74 282.3 301 53.8
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.2e-70 270.8 212 67.0
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 7.9e-70 268.1 210 66.7
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 5.7e-68 261.9 257 56.8
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.3e-64 250.8 269 58.4
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-62 244.2 184 65.2
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.0e-61 241.1 297 49.5
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 8.8e-61 238.0 189 66.1
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 2.2e-56 223.4 273 52.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.0e-53 213.0 218 54.1
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.7e-53 211.8 176 63.1
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 3.3e-52 209.5 322 42.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 5.3e-50 202.2 302 45.7
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 9.1e-50 201.4 297 43.4
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-47 194.5 299 41.1
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 9.4e-47 191.4 304 40.1
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 2.2e-43 180.3 173 49.1
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.0e-37 161.4 225 41.8
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 2.6e-36 156.8 296 38.5
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 6.3e-35 152.1 168 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.8e-27 126.7 288 33.0
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.6e-25 120.9 95 62.1
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 8.6e-24 115.2 81 63.0
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-23 114.4 85 65.9
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 3.3e-23 113.2 147 44.9
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 7.2e-23 112.1 117 49.6
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.1e-22 110.5 106 49.1
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.8e-22 110.2 81 60.5
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 4.0e-21 106.3 290 31.4
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.3e-19 99.0 122 51.6
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 3.9e-16 89.7 148 33.1
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.9e-15 87.4 55 72.7
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 8.0e-14 82.0 150 34.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 8.0e-14 82.0 80 57.5
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.1e-13 80.1 112 51.8
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 8.9e-13 78.6 72 55.6
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-11 74.7 51 68.6
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.1e-10 69.7 160 30.0
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 3.9e-08 63.2 43 69.8
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 8.6e-08 62.0 53 49.1
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 2.8e-06 57.0 293 24.6


User provided reference genes

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