Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.4e-110 402.9 197 100.0
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 2.9e-100 368.6 194 90.7
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.1e-99 366.7 194 90.7
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 3.3e-99 365.2 194 90.2
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 9.5e-99 363.6 194 88.1
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 3.6e-98 361.7 194 87.6
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 4.7e-98 361.3 193 88.6
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 3.1e-97 358.6 194 88.1
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 4.0e-97 358.2 194 86.6
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 5.2e-97 357.8 194 86.6
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 8.9e-97 357.1 194 88.1
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.0e-96 355.9 225 79.1
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 7.5e-96 354.0 194 85.1
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 7.5e-96 354.0 194 87.1
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 1.7e-95 352.8 194 86.6
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.2e-95 352.4 194 84.5
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.2e-95 352.4 194 84.5
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 2.2e-95 352.4 194 84.5
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 2.2e-95 352.4 194 86.1
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.9e-95 352.1 194 86.6
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 2.9e-95 352.1 194 84.0
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 3.7e-95 351.7 194 84.5
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 4.9e-95 351.3 194 85.6
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 4.9e-95 351.3 194 85.1
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 4.9e-95 351.3 194 85.6
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 4.9e-95 351.3 194 86.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 6.4e-95 350.9 194 86.1
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 6.4e-95 350.9 194 87.1
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 6.4e-95 350.9 194 86.1
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 8.3e-95 350.5 194 86.1
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 85.1
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 84.0
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 3.2e-94 348.6 194 85.6
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 84.5
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 83.5
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 1.6e-93 346.3 194 85.1
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 1.6e-93 346.3 194 84.5
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 1.6e-93 346.3 194 84.5
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.6e-93 346.3 194 85.1
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 84.0
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 84.5
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 2.7e-93 345.5 196 84.2
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 3.5e-93 345.1 194 84.0
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 4.6e-93 344.7 194 85.1
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 4.6e-93 344.7 194 84.5
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.0e-93 344.4 194 80.9
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 6.0e-93 344.4 194 84.5
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 6.0e-93 344.4 194 83.0
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 6.0e-93 344.4 194 83.5
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 7.8e-93 344.0 194 81.4
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 84.5
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.3e-92 343.2 200 82.0
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 1.7e-92 342.8 194 83.0
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 2.3e-92 342.4 194 81.4
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.3e-92 342.4 214 78.0
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 5.0e-92 341.3 214 78.0
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 8.6e-92 340.5 214 78.5
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.5e-91 339.7 194 82.5
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.5e-91 339.7 194 82.5
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 2.5e-91 339.0 188 83.5
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 81.4
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.3e-91 338.6 194 82.0
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 5.6e-91 337.8 194 82.5
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 5.6e-91 337.8 194 83.0
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 7.3e-91 337.4 187 85.0
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 7.3e-91 337.4 194 82.5
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 6.2e-90 334.3 194 80.9
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.3e-89 332.4 195 79.5
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 5.2e-89 331.3 196 78.6
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 6.8e-89 330.9 194 79.4
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 6.8e-89 330.9 194 79.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 1.2e-88 330.1 194 79.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.2e-88 330.1 195 81.0
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 78.9
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.6e-88 328.9 187 81.3
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 2.6e-88 328.9 194 78.4
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 5.8e-88 327.8 194 79.4
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 5.8e-88 327.8 210 75.2
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 79.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 79.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 79.4
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 2.2e-87 325.9 274 65.0
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 2.2e-87 325.9 235 69.4
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 4.9e-87 324.7 194 78.9
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 2.4e-86 322.4 194 78.4
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 3.2e-86 322.0 178 84.8
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.2e-86 322.0 194 76.3
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 79.9
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 2.5e-83 312.4 194 75.3
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.3e-83 311.6 174 85.1
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 9.5e-83 310.5 193 77.7
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 8.1e-82 307.4 194 75.3
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.2e-80 303.5 194 75.8
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 1.2e-80 303.5 297 55.2
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 3.4e-80 302.0 176 80.7
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 7.5e-80 300.8 210 71.0
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 1.7e-79 299.7 194 71.1
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.7e-79 299.7 194 71.6
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 2.4e-78 295.8 194 71.1
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.2e-77 293.5 162 84.6
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 1.2e-77 293.5 283 57.2
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.2e-77 293.5 194 69.1
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 2.1e-77 292.7 161 87.0
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 8.6e-76 287.3 195 67.7
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.5e-75 285.8 160 85.0
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 2.7e-69 265.8 172 69.8
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.0e-60 237.3 122 93.4
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.1e-58 229.6 120 90.0
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 8.1e-58 227.6 120 87.5
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.9e-55 219.2 134 77.6
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 1.9e-54 216.5 178 57.3
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 8.7e-52 207.6 121 78.5
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.9e-51 206.5 123 79.7
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 4.8e-50 201.8 114 85.1
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 6.2e-50 201.4 123 76.4
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 6.5e-47 191.4 191 49.7
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 6.7e-44 181.4 114 74.6
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 3.3e-43 179.1 112 72.3
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.2e-40 170.6 93 84.9
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 4.5e-40 168.7 173 49.7
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.0e-39 167.5 99 77.8
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 6.5e-39 164.9 122 63.1
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 2.1e-37 159.8 89 85.4
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 6.3e-34 148.3 181 41.4
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 1.7e-31 140.2 88 76.1
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 1.7e-31 140.2 88 76.1
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 3.8e-31 139.0 76 81.6
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.4e-30 137.1 71 85.9
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.9e-30 136.7 73 83.6
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.9e-30 136.7 73 83.6
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.9e-30 136.7 73 83.6
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.9e-30 136.7 73 83.6
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 6.7e-28 128.3 64 90.6
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 5.1e-20 102.1 74 67.6
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.0e-19 100.1 59 83.1
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.1e-14 84.3 56 73.2
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.9e-14 83.6 94 51.1
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 4.7e-13 79.0 83 50.6
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 4.7e-13 79.0 83 50.6
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 1.3e-10 70.9 56 62.5
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 2.2e-10 70.1 71 53.5
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.1e-09 65.9 93 44.1


User provided reference genes

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