Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17638 Vaccinium macrocarpon HOM05D005460 ORTHO05D018279 2.1e-160 568.9 283 100.0
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 8.0e-91 337.8 229 73.8
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 1.4e-71 273.9 237 62.0
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 6.8e-58 228.4 229 55.0
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 1.2e-54 217.6 229 53.3
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 4.8e-43 179.1 229 41.5
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 8.1e-43 178.3 229 41.0
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 2.4e-42 176.8 231 44.2
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 1.2e-41 174.5 228 40.4
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 1.7e-40 170.6 240 38.3
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 3.5e-38 162.9 244 40.6
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 3.9e-37 159.5 243 38.7
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 1.5e-36 157.5 232 37.5
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 1.5e-36 157.5 232 41.4
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 4.3e-36 156.0 246 36.6
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 9.6e-36 154.8 233 38.6
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 4.8e-35 152.5 243 38.7
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 5.3e-34 149.1 232 38.8
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 1.5e-33 147.5 237 37.1
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 5.8e-33 145.6 231 37.2
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 5.8e-33 145.6 228 36.4
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 9.9e-33 144.8 238 38.2
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 1.7e-32 144.1 235 37.9
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 2.2e-32 143.7 244 35.2
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 6.4e-32 142.1 231 35.9
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 6.4e-32 142.1 237 39.2
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 2.4e-31 140.2 237 38.0
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 4.2e-31 139.4 288 31.2
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 5.5e-31 139.0 267 33.3
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 1.2e-30 137.9 228 36.0
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 4.6e-30 136.0 230 38.3
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 6.0e-30 135.6 238 37.8
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 6.0e-30 135.6 232 37.9
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.3e-29 134.4 237 36.7
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 8.7e-29 131.7 246 34.1
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 3.3e-28 129.8 229 34.9
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 1.6e-27 127.5 229 33.6
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 2.1e-27 127.1 230 36.1
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 2.1e-27 127.1 230 36.1
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 2.8e-27 126.7 235 35.3
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 3.7e-27 126.3 230 33.5
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 4.8e-27 125.9 230 34.8
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 8.2e-27 125.2 152 39.5
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.1e-26 124.8 229 34.1
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 1.1e-26 124.8 235 37.0
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 1.4e-26 124.4 233 35.6
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 1.4e-26 124.4 237 35.9
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 1.8e-26 124.0 231 35.1
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 4.0e-26 122.9 231 35.9
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 5.3e-26 122.5 229 34.5
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 5.3e-26 122.5 229 35.4
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 2.0e-25 120.6 237 34.2
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 4.5e-25 119.4 234 34.2
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 1.0e-24 118.2 250 34.0
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 1.0e-24 118.2 250 34.0
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 1.7e-24 117.5 275 32.4
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 6.5e-24 115.5 235 33.6
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 1.1e-23 114.8 122 47.5
Hma1.2p1_2037F.1_g311970 Hydrangea macrophylla HOM05D005460 ORTHO05D018279 4.2e-23 112.8 229 33.6
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 4.2e-23 112.8 233 35.2
SHI17426 Sapria himalayana HOM05D005460 ORTHO05D018279 9.3e-23 111.7 229 32.8
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 1.2e-22 111.3 229 34.1
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 4.3e-20 102.8 166 39.8
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 5.7e-20 102.4 232 32.3
Psat7g070520 Pisum sativum HOM05D005460 ORTHO05D008059 2.8e-19 100.1 230 30.4
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 6.3e-19 99.0 229 31.0
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 5.3e-18 95.9 234 34.6
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 6.9e-18 95.5 229 29.3
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 2.0e-17 94.0 131 46.6
vmacro01724 Vaccinium macrocarpon HOM05D000113 ORTHO05D005835 1.1e-15 88.2 120 50.0
vmacro11693 Vaccinium macrocarpon HOM05D000320 ORTHO05D000532 1.1e-15 88.2 55 81.8
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 4.6e-14 82.8 109 36.7
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 7.9e-14 82.0 109 36.7
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 2.3e-13 80.5 109 38.5
Hma1.2p1_3034F.1_g331880 Hydrangea macrophylla HOM05D005460 ORTHO05D018279 3.0e-13 80.1 187 31.0
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 8.8e-13 78.6 120 39.2
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 3.3e-12 76.6 126 32.5
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 3.3e-12 76.6 229 27.5
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 3.3e-12 76.6 126 31.7
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 4.3e-12 76.3 127 33.1
RcHm_v2.0_Chr7g0183721 Rosa chinensis HOM05D005460 ORTHO05D018279 5.7e-12 75.9 156 37.2
Ah.11g047420 Amaranthus hybridus HOM05D005460 ORTHO05D018279 9.7e-12 75.1 175 28.0
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 1.3e-11 74.7 121 32.2
Potri.012G063000 Populus trichocarpa HOM05D005460 ORTHO05D018279 1.3e-11 74.7 75 49.3
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 1.7e-11 74.3 121 32.2
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 4.8e-11 72.8 109 33.9
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 8.2e-11 72.0 209 27.3
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 2.9e-08 63.5 176 31.2


User provided reference genes

Program Settings