Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 7.8e-228 793.5 412 100.0
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.2e-150 536.2 311 88.7
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.2e-149 531.2 311 85.5
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.7e-148 528.5 311 86.2
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 3.6e-132 475.7 311 78.1
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 6.3e-129 464.9 311 76.5
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 2.7e-127 459.5 314 76.1
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.5e-127 458.8 313 75.7
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.3e-126 457.2 311 74.6
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 5.0e-126 455.3 317 75.1
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 6.5e-126 454.9 318 74.2
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 6.5e-126 454.9 315 75.6
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.1e-125 454.1 309 76.7
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.9e-125 453.4 311 75.6
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.5e-125 453.0 317 74.8
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.5e-125 453.0 311 75.9
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 3.2e-125 452.6 311 75.9
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.5e-125 451.8 313 75.1
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.2e-125 451.4 315 75.9
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 7.2e-125 451.4 315 75.9
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 7.2e-125 451.4 311 73.3
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.4e-125 451.1 315 75.9
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.6e-124 450.3 311 75.6
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.4e-123 447.2 319 73.7
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.3e-123 446.4 311 74.3
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 6.8e-123 444.9 310 74.5
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 8.8e-123 444.5 311 73.0
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.2e-122 444.1 311 73.6
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.0e-122 443.4 311 74.0
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 2.6e-122 443.0 317 72.6
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 3.4e-122 442.6 316 72.8
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 4.4e-122 442.2 312 75.0
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.3e-121 440.7 314 72.6
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.3e-121 440.7 314 72.6
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.3e-121 440.7 312 73.7
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.3e-121 440.7 312 73.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.3e-121 440.7 314 72.3
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 2.2e-121 439.9 310 74.8
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.2e-121 439.9 311 73.3
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 2.8e-121 439.5 317 73.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.8e-121 439.5 311 73.3
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.1e-120 437.6 311 72.7
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.4e-120 437.2 311 73.3
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.4e-120 437.2 311 71.1
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.8e-120 436.8 311 74.3
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.4e-120 436.4 312 73.1
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.4e-120 436.4 311 73.0
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 5.4e-120 435.3 310 72.3
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 5.4e-120 435.3 310 72.3
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 9.1e-120 434.5 314 72.9
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.2e-119 434.1 315 70.8
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 2.0e-119 433.3 313 73.2
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.5e-119 432.6 314 72.0
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 7.7e-119 431.4 314 72.6
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 7.7e-119 431.4 312 71.5
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.3e-118 430.6 312 71.2
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.3e-118 430.6 317 71.3
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.9e-118 429.5 314 71.3
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.9e-118 429.5 312 72.1
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.1e-117 427.6 314 71.7
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.5e-117 427.2 315 70.2
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 3.3e-117 426.0 314 70.1
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 5.6e-117 425.2 321 70.4
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 9.5e-117 424.5 312 72.4
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.6e-116 423.7 317 69.4
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.1e-116 423.3 312 71.5
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 4.7e-116 422.2 348 66.1
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.7e-116 422.2 311 70.7
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.0e-115 419.5 311 71.1
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 4.0e-115 419.1 311 69.8
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.2e-114 417.5 315 67.3
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.0e-114 416.8 349 63.9
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 3.4e-114 416.0 311 70.1
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 9.8e-114 414.5 315 68.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.3e-113 414.1 291 74.2
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 1.7e-113 413.7 317 69.7
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 2.9e-113 412.9 270 80.0
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 4.9e-113 412.1 311 68.5
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 6.4e-113 411.8 311 68.2
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.4e-112 410.6 267 80.5
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.4e-112 410.6 362 61.9
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 5.4e-112 408.7 313 68.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 5.4e-112 408.7 315 69.2
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.2e-111 407.5 311 68.5
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 3.5e-111 406.0 311 67.5
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.0e-110 404.4 312 68.9
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 6.6e-110 401.7 312 68.3
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.5e-109 400.6 311 66.6
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.5e-109 400.6 314 67.8
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.5e-109 399.8 311 66.6
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.5e-109 399.8 311 66.6
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 9.5e-109 397.9 311 67.5
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.2e-108 397.5 312 67.3
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 1.6e-108 397.1 311 67.2
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 1.6e-108 397.1 311 67.2
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 1.6e-108 397.1 311 67.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 2.1e-108 396.7 269 77.3
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.5e-106 390.6 223 88.3
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 5.8e-106 388.7 335 61.8
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 4.1e-104 382.5 311 65.3
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.6e-103 380.6 270 73.7
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.5e-103 379.4 292 69.2
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.7e-102 377.1 332 61.4
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 7.3e-101 371.7 342 60.2
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.6e-100 370.5 347 59.7
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.3e-97 360.9 328 59.8
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 2.3e-94 350.1 309 59.2
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.2e-92 344.4 203 83.3
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.6e-92 342.8 268 66.8
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.8e-91 340.5 211 81.0
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 5.2e-91 339.0 320 56.6
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.4e-88 330.9 311 61.4
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 4.7e-84 315.8 286 60.8
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 4.7e-84 315.8 352 53.1
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 4.9e-81 305.8 311 54.0
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 8.4e-81 305.1 311 55.6
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 4.2e-80 302.8 185 81.1
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.8e-67 260.8 228 64.9
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 7.6e-66 255.4 384 43.0
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 4.9e-65 252.7 294 49.3
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 2.3e-62 243.8 250 59.6
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 3.0e-62 243.4 252 56.3
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.3e-59 232.6 191 69.6
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 8.5e-49 198.7 272 46.3
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.1e-48 198.4 236 49.2
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.9e-48 197.6 312 43.6
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 6.1e-47 192.6 117 83.8
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.1e-43 181.8 194 55.2
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 4.5e-42 176.4 241 44.0
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 9.4e-40 168.7 119 72.3
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 6.1e-39 166.0 206 44.7
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.7e-38 162.5 249 45.8
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.6e-37 160.6 95 86.3
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 6.9e-35 152.5 96 83.3
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.0e-34 151.0 126 65.1
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.0e-34 151.0 126 65.1
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.0e-33 148.7 93 87.1
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.7e-33 147.9 122 65.6
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 3.8e-33 146.7 191 45.5
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.2e-28 131.0 80 82.5
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 5.3e-27 126.3 141 52.5
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 6.5e-25 119.4 240 38.3
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.3e-22 110.9 93 64.5
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.0e-21 107.8 99 61.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 9.1e-19 99.0 64 79.7
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.5e-10 70.1 40 75.0
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 1.7e-09 68.2 130 40.0
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 7.2e-08 62.8 43 72.1
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.1e-07 59.7 42 64.3
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 6.1e-07 59.7 57 64.9
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 8.0e-07 59.3 62 58.1
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 3.0e-06 57.4 93 38.7


User provided reference genes

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