Gene: AT2G16860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G16860
  • Transcript Identifier AT2G16860.2
  • Gene Type Coding gene
  • Location Chr2 : 7304139-7305959 : negative

Gene Family Information

  • ID HOM05D005026
  • #Genes/#Species 148/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G16860.2
  • uniprot Q9ZVX7

Descriptions

  • Description GCIP-interacting family protein
  • Computational description GCIP-interacting family protein; CONTAINS InterPro DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260); Has 2586 Blast hits to 2013 proteins in 293 species: Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265; Plants - 138; Viruses - 7; Other Eukaryotes - 1326 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0000974
IBA
Gene OntologyPrp19 complex1
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0071014
IBA
Gene Ontologypost-mRNA release spliceosomal complex1
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013260 mRNA splicing factor SYF2
Mapman id Description
16.2.5.2.7 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component SYF2