Gene: Solyc10g055640.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc10g055640.2
- Transcript Identifier Solyc10g055640.2.1
- Gene Type Coding gene
- Location SL4.0ch10 : 56174598-56181380 : negative
Gene Family Information
- ID HOM05D005026
- #Genes/#Species 148/93
- Phylogenetic origin
- ID ORTHO05D005981
- #Genes/#Species 149/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc10g055640.2.1
- uniprot A0A3Q7IIR9
- gene_id Solyc10g055640
Descriptions
- Description Pre-mRNA-splicing factor syf2 (AHRD V3.3 *** A0A1J3CRD6_NOCCA)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005681 | IEA | GOA Database | spliceosomal complex | |
| GO:0071014 | IBA | GOA Database | post-mRNA release spliceosomal complex | |
| GO:0071013 | IBA | GOA Database | catalytic step 2 spliceosome | |
| GO:0000974 | IBA | GOA Database | Prp19 complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013260 | mRNA splicing factor SYF2 |
| Mapman id | Description |
|---|---|
| 16.2.5.2.7 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component SYF2 |