Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 2.0e-175 619.0 316 100.0
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 3.2e-96 355.9 411 55.0
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 7.8e-87 324.7 319 62.1
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 2.4e-83 313.2 320 59.4
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 9.0e-83 311.2 321 58.9
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 3.8e-81 305.8 321 58.3
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 4.9e-81 305.4 321 56.4
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 4.9e-81 305.4 325 56.6
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 6.4e-81 305.1 321 59.2
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 1.2e-79 300.8 194 79.4
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.2e-79 300.8 268 61.9
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 4.6e-79 298.9 321 57.6
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 1.3e-78 297.4 315 57.8
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 1.7e-78 297.0 325 56.0
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 2.3e-78 296.6 337 54.9
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 3.0e-78 296.2 320 57.2
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.5e-77 293.9 271 62.0
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 7.3e-77 291.6 331 54.7
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 9.6e-77 291.2 319 55.2
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 9.6e-77 291.2 324 55.2
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 2.8e-76 289.7 295 56.9
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 3.6e-76 289.3 324 55.2
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 6.2e-76 288.5 319 54.5
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 6.2e-76 288.5 185 79.5
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 8.1e-76 288.1 326 56.1
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 8.1e-76 288.1 321 55.1
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 8.1e-76 288.1 327 54.7
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.1e-75 287.7 309 56.3
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.1e-75 287.7 319 55.8
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.8e-75 287.0 322 56.8
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.8e-75 287.0 322 56.2
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 2.4e-75 286.6 319 55.5
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 4.0e-75 285.8 185 78.9
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 9.0e-75 284.6 319 56.1
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 1.2e-74 284.3 320 54.1
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 1.2e-74 284.3 321 54.8
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 1.5e-74 283.9 332 52.1
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 2.0e-74 283.5 328 53.7
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 2.6e-74 283.1 321 54.5
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.4e-74 282.7 185 77.3
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 3.4e-74 282.7 321 55.5
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 5.8e-74 282.0 321 54.8
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 7.6e-74 281.6 185 77.3
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 7.6e-74 281.6 335 52.5
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 7.6e-74 281.6 289 57.1
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 9.9e-74 281.2 186 75.8
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 9.9e-74 281.2 329 53.2
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.3e-73 280.8 326 51.5
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 2.2e-73 280.0 289 57.8
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 2.9e-73 279.6 315 54.0
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 3.8e-73 279.3 320 53.8
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 6.4e-73 278.5 272 57.7
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 8.4e-73 278.1 183 77.0
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 1.1e-72 277.7 322 53.7
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 1.1e-72 277.7 331 52.6
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 5.4e-72 275.4 313 53.7
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 9.3e-72 274.6 322 53.1
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 2.1e-71 273.5 307 54.7
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 2.7e-71 273.1 188 75.5
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 3.5e-71 272.7 188 70.2
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 4.6e-71 272.3 302 54.3
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 6.0e-71 271.9 272 55.5
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 6.0e-71 271.9 306 54.2
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 1.8e-70 270.4 308 54.2
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 2.3e-70 270.0 324 52.2
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 3.9e-70 269.2 274 56.6
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 5.1e-70 268.9 299 52.5
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 6.7e-70 268.5 310 54.5
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 6.7e-70 268.5 301 55.1
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 8.7e-70 268.1 185 70.8
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 1.1e-69 267.7 189 70.4
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.5e-69 267.3 189 69.8
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 1.5e-69 267.3 186 72.6
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.9e-69 266.9 277 56.0
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.5e-69 266.5 277 56.0
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 2.5e-69 266.5 314 51.6
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 3.3e-69 266.2 186 72.0
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 3.3e-69 266.2 186 72.0
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 3.3e-69 266.2 306 53.3
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 4.3e-69 265.8 313 53.7
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 5.6e-69 265.4 189 70.4
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 9.6e-69 264.6 307 53.4
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 9.6e-69 264.6 321 50.5
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 3.7e-68 262.7 328 48.8
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 6.2e-68 261.9 189 73.5
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 5.3e-67 258.8 291 52.9
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 5.8e-66 255.4 326 49.4
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 1.0e-65 254.6 205 65.4
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.0e-65 254.6 205 65.4
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 2.9e-65 253.1 205 64.9
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 4.9e-65 252.3 177 72.3
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 8.4e-65 251.5 289 51.9
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 1.9e-64 250.4 288 52.4
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 2.5e-64 250.0 185 68.6
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.0e-62 244.6 265 54.3
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 1.0e-62 244.6 301 48.2
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 3.3e-61 239.6 315 48.9
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 7.4e-61 238.4 186 68.3
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 2.1e-60 236.9 305 47.2
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 6.1e-55 218.8 307 48.5
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.5e-53 214.2 241 53.5
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 4.8e-52 209.1 232 54.7
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 2.0e-50 203.8 187 62.0
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 8.5e-49 198.4 184 56.0
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 3.2e-48 196.4 161 70.2
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 6.7e-46 188.7 185 59.5
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 1.1e-45 188.0 185 55.1
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 3.7e-44 183.0 187 49.2
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 1.1e-43 181.4 184 52.2
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 1.4e-43 181.0 172 55.8
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 6.1e-39 165.6 128 66.4
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 1.8e-38 164.1 94 79.8
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.3e-36 157.9 92 78.3
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 2.2e-36 157.1 120 66.7
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 6.5e-33 145.6 168 56.5
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 2.7e-31 140.2 185 51.9
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.1e-27 128.3 160 53.1
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 1.4e-27 127.9 98 68.4
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 1.8e-27 127.5 103 57.3
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 2.6e-21 107.1 189 37.6
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 7.5e-21 105.5 78 73.1
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 3.1e-19 100.1 167 41.9
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 1.6e-18 97.8 107 50.5
vmacro01705 Vaccinium macrocarpon HOM05D002143 ORTHO05D002260 2.9e-17 93.6 69 79.7
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 1.5e-16 91.3 71 59.2
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 1.9e-16 90.9 183 35.0
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 4.2e-16 89.7 83 55.4
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 6.3e-12 75.9 65 60.0
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 1.5e-08 64.7 50 70.0
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 2.1e-07 60.8 46 71.7


User provided reference genes

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