Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 0.0e+00 1665.2 938 100.0
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 0.0e+00 1261.5 932 77.3
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 0.0e+00 1161.0 976 71.7
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 6.6e-299 1030.8 857 68.0
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 6.8e-296 1020.8 852 68.5
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.3e-291 1005.7 861 65.2
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 8.6e-291 1003.8 911 63.4
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.2e-288 994.6 860 65.9
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 6.6e-283 977.6 858 64.0
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 8.6e-283 977.2 968 58.7
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 1.6e-281 973.0 864 63.4
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 4.9e-278 961.4 900 60.7
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 7.1e-277 957.6 869 61.8
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.3e-275 953.4 871 62.0
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 3.9e-275 951.8 930 61.0
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.5e-274 949.9 856 62.0
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.6e-273 946.4 967 57.9
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 7.6e-271 937.6 841 62.3
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 1.3e-270 936.8 978 56.1
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 2.4e-269 932.6 965 55.8
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 1.2e-268 930.2 974 55.9
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.5e-266 923.3 863 61.2
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 1.9e-266 922.9 846 61.7
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 9.6e-266 920.6 915 59.2
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 6.2e-265 917.9 861 60.5
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.1e-264 917.1 843 60.4
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 3.1e-264 915.6 951 57.2
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 5.3e-264 914.8 840 60.7
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 9.0e-264 914.1 971 58.0
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.5e-263 913.3 959 56.0
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.7e-262 909.8 1009 54.7
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.7e-262 909.8 979 56.0
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 2.9e-262 909.1 849 60.8
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.4e-261 906.7 847 60.2
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 1.4e-261 906.7 847 60.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.9e-261 906.4 847 60.2
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.1e-259 898.3 785 65.4
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 5.1e-259 898.3 883 58.6
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 8.7e-259 897.5 856 58.8
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.3e-257 893.6 896 56.5
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.3e-257 893.6 840 60.6
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 4.8e-257 891.7 959 57.2
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.4e-256 890.2 844 59.8
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 9.0e-256 887.5 920 58.6
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.2e-255 887.1 843 59.4
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.4e-255 885.6 843 59.5
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 5.8e-255 884.8 843 59.8
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 1.3e-254 883.6 855 59.3
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.7e-254 883.2 969 53.3
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 4.9e-254 881.7 852 57.6
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.2e-253 879.0 967 54.6
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 9.3e-253 877.5 848 58.8
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 1.2e-252 877.1 968 54.0
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 7.9e-252 874.4 984 53.7
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.0e-251 874.0 847 59.0
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.8e-248 863.2 906 57.2
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 2.4e-248 862.8 915 56.2
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 5.3e-248 861.7 851 57.3
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.2e-247 860.5 757 61.8
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 6.5e-246 854.7 801 63.8
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.6e-244 850.1 842 56.5
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 2.1e-241 839.7 845 56.8
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 2.1e-241 839.7 966 52.8
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 4.1e-240 835.5 964 52.6
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 2.2e-238 829.7 852 56.5
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 1.4e-237 827.0 981 53.5
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 1.9e-237 826.6 986 50.6
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 2.5e-237 826.2 847 56.7
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 7.2e-237 824.7 962 52.4
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 7.9e-236 821.2 981 49.4
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.5e-234 817.0 955 52.8
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 3.7e-233 812.4 963 52.6
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 6.9e-232 808.1 962 54.4
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 9.1e-232 807.7 853 55.8
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.5e-231 807.0 852 55.2
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 2.0e-231 806.6 907 53.6
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.9e-229 800.0 960 50.8
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 2.1e-228 796.6 848 55.4
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 8.2e-225 784.6 850 53.3
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.4e-224 783.1 920 51.5
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 3.8e-222 775.8 841 54.1
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 7.2e-221 771.5 854 54.0
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 2.3e-219 766.5 636 65.3
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 5.2e-219 765.4 802 55.5
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 4.8e-217 758.8 876 52.6
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.2e-215 754.2 965 49.3
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 5.9e-215 751.9 964 50.0
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 8.5e-214 748.0 955 48.0
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 7.2e-213 745.0 835 53.3
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 4.7e-212 742.3 962 47.5
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 4.7e-212 742.3 962 47.5
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 1.4e-208 730.7 957 46.9
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.4e-208 730.7 952 48.3
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.2e-207 727.6 835 52.7
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 2.0e-207 726.9 953 47.8
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 1.7e-206 723.8 957 46.6
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 6.5e-206 721.8 822 50.9
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 3.6e-204 716.1 963 47.2
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 2.3e-203 713.4 844 51.3
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 2.6e-202 709.9 962 48.4
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 3.2e-197 693.0 848 49.6
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 6.3e-193 678.7 951 45.6
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 3.1e-192 676.4 848 48.7
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 2.3e-190 670.2 951 45.5
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 8.9e-187 658.3 996 42.0
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.4e-184 650.2 554 69.1
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.1e-179 634.8 490 68.0
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 3.1e-179 633.3 498 66.5
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 7.0e-176 622.1 882 44.3
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 1.2e-175 621.3 1000 41.5
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.6e-167 594.3 864 43.1
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.9e-165 587.4 882 42.7
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 4.3e-165 586.3 886 42.4
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 6.4e-161 572.4 495 60.8
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 4.6e-151 539.7 853 41.1
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 5.5e-120 436.4 927 34.6
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.4e-112 411.8 495 49.9
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.7e-90 337.8 330 57.0
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 5.0e-89 333.6 344 59.6
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 4.4e-85 320.5 326 62.9
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 1.1e-83 315.8 441 43.1
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 3.5e-82 310.8 482 47.5
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 1.9e-80 305.1 449 42.3
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 5.2e-78 297.0 295 53.6
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 8.3e-76 289.7 443 54.4
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 2.0e-74 285.0 334 47.3
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 5.0e-73 280.4 274 55.5
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 5.2e-70 270.4 183 77.6
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 7.0e-67 260.0 436 45.9
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 7.3e-64 250.0 523 32.5
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 2.1e-63 248.4 612 30.1
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 3.2e-51 208.0 162 63.0
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 1.2e-42 179.5 301 43.9
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.3e-36 159.5 151 60.9
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.8e-36 157.9 151 60.9
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 1.7e-28 132.5 97 60.8
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 5.4e-27 127.5 215 42.3
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.2e-21 109.8 77 68.8
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 8.4e-20 103.6 85 62.4
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 1.6e-18 99.4 68 72.1
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.5e-18 98.2 90 60.0
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.3e-16 91.7 90 54.4
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 3.7e-15 88.2 86 48.8
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 8.2e-15 87.0 85 56.5
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 1.8e-14 85.9 142 43.7
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 4.2e-11 74.7 89 48.3
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 5.1e-09 67.8 73 50.7
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 6.7e-09 67.4 76 48.7
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 8.7e-09 67.0 37 75.7
EL10Ac7g17540 Beta vulgaris HOM05D000966 ORTHO05D019838 7.4e-08 63.9 76 47.4
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 4.8e-07 61.2 49 53.1
EL10As3g23368 Beta vulgaris HOM05D004199 ORTHO05D019838 1.8e-06 59.3 132 37.1
EL10Ac5g11598 Beta vulgaris HOM05D004199 ORTHO05D088829 4.1e-06 58.2 66 45.5


User provided reference genes

Program Settings