Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 4.0e-149 531.6 300 100.0
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 3.4e-140 501.9 300 94.7
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 5.8e-132 474.6 304 89.5
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 7.6e-132 474.2 299 83.3
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.7e-131 473.0 300 82.3
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 1.1e-130 470.3 299 90.0
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.7e-128 463.0 300 82.7
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.7e-128 463.0 300 83.0
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 3.9e-128 461.8 300 83.0
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 5.1e-128 461.5 302 81.1
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 5.1e-128 461.5 297 83.2
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 6.6e-128 461.1 304 81.9
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 8.7e-128 460.7 301 83.1
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 8.7e-128 460.7 302 79.8
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.9e-127 459.5 304 81.2
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.9e-127 459.5 304 81.2
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.9e-127 459.5 304 81.6
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 3.3e-127 458.8 304 78.9
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 4.3e-127 458.4 304 82.6
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 9.6e-127 457.2 302 81.8
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.1e-126 456.1 300 85.0
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 2.1e-126 456.1 304 78.9
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 3.6e-126 455.3 300 85.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.6e-126 455.3 304 80.9
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 3.6e-126 455.3 300 79.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.6e-126 455.3 300 85.0
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.8e-126 454.9 300 80.7
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 4.8e-126 454.9 297 85.5
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 6.2e-126 454.5 306 85.6
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 6.2e-126 454.5 306 85.6
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 6.2e-126 454.5 306 85.6
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 8.1e-126 454.1 300 82.7
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.1e-125 453.8 300 78.7
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.4e-125 453.4 300 81.0
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.4e-125 453.4 297 81.5
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.8e-125 453.0 300 80.7
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.8e-125 453.0 301 81.4
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 2.4e-125 452.6 301 79.7
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 79.3
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.2e-124 450.3 300 78.3
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.5e-124 449.9 300 79.7
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-124 449.9 300 80.0
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.5e-124 449.9 300 80.0
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 2.0e-124 449.5 304 77.0
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 4.5e-124 448.4 300 79.3
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 5.8e-124 448.0 304 80.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 5.8e-124 448.0 304 76.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 5.8e-124 448.0 303 79.5
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 5.8e-124 448.0 304 80.3
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 7.6e-124 447.6 304 78.9
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.6e-124 447.6 302 84.1
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 9.9e-124 447.2 304 80.3
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 9.9e-124 447.2 303 78.5
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.3e-123 446.8 292 81.5
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.3e-123 446.8 300 76.0
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.7e-123 446.4 303 79.9
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.7e-123 446.4 303 79.9
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.2e-123 446.0 302 79.8
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 3.8e-123 445.3 292 82.2
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 4.9e-123 444.9 304 81.2
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 6.4e-123 444.5 300 83.3
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.4e-122 443.4 300 78.0
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.9e-122 443.0 305 83.6
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.9e-122 443.0 300 76.7
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.9e-122 443.0 303 79.5
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.4e-122 442.6 300 79.0
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.6e-121 439.9 302 75.8
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.6e-121 439.9 303 80.2
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.1e-121 439.5 300 83.0
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 2.7e-121 439.1 302 80.5
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 3.5e-121 438.7 304 78.6
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 7.9e-121 437.6 304 77.3
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.3e-120 436.8 303 79.5
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.3e-120 436.8 303 74.9
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.3e-120 436.0 309 74.4
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 3.0e-120 435.6 302 79.5
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 5.1e-120 434.9 301 76.1
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 5.1e-120 434.9 304 78.3
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 6.7e-120 434.5 303 80.9
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 6.7e-120 434.5 301 80.1
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 8.7e-120 434.1 301 76.7
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.1e-119 433.7 309 76.4
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.5e-119 433.3 299 75.6
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.3e-118 430.3 300 73.3
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.6e-118 429.9 303 78.9
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 4.8e-118 428.3 303 79.9
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 4.8e-118 428.3 300 77.3
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 8.1e-118 427.6 300 80.7
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.1e-117 427.2 283 79.5
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.8e-117 426.4 303 79.5
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 2.4e-117 426.0 303 81.5
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 3.1e-117 425.6 305 77.4
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 9.0e-117 424.1 300 74.0
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.5e-116 423.3 300 74.0
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.3e-115 420.2 302 78.1
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.7e-115 419.9 301 76.4
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.9e-115 419.1 302 78.5
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 4.9e-115 418.3 301 72.4
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 8.4e-115 417.5 300 74.3
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 8.4e-115 417.5 300 76.3
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.1e-114 417.2 297 80.1
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.9e-114 416.4 300 73.7
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.1e-113 412.9 300 73.0
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.3e-112 410.2 300 71.3
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-112 409.8 300 74.3
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.8e-112 409.8 300 74.3
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.8e-112 409.8 300 74.3
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.5e-111 406.8 301 71.4
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 3.3e-111 405.6 302 71.2
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 6.1e-105 384.8 312 66.3
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 3.9e-104 382.1 297 68.0
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.5e-103 380.2 300 66.0
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-100 370.5 278 73.7
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 7.9e-97 357.8 300 63.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.4e-96 357.1 289 68.5
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.0e-95 353.2 312 64.4
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 2.0e-92 343.2 323 63.2
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 5.9e-92 341.7 301 57.8
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 3.7e-86 322.4 195 81.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.5e-84 315.8 250 74.4
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 3.2e-82 309.3 250 66.4
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.0e-80 302.8 301 54.5
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 5.2e-80 302.0 296 58.4
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.2e-78 296.6 301 56.8
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.5e-74 283.9 300 59.7
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.0e-72 277.7 196 80.1
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.8e-69 266.9 134 97.0
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 4.5e-68 262.3 297 50.8
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.8e-57 226.5 271 57.6
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 3.4e-55 219.5 204 67.6
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 9.8e-55 218.0 189 68.3
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.2e-52 211.1 311 44.7
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.0e-48 198.0 292 45.2
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.1e-45 186.0 164 75.0
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.6e-44 184.1 195 56.9
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 6.6e-43 178.7 193 57.5
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 3.3e-42 176.4 227 52.0
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 9.5e-42 174.9 197 49.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.2e-39 167.9 110 78.2
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.6e-36 157.5 104 72.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.0e-31 140.6 163 49.1
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 4.9e-30 136.0 83 75.9
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 6.6e-27 125.6 262 46.6
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 4.9e-22 109.4 58 86.2
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 3.2e-21 106.7 58 82.8
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.6e-20 104.4 300 34.3
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 2.1e-20 104.0 61 77.0
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.7e-20 103.6 300 34.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.5e-18 97.1 59 74.6
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 3.3e-18 96.7 152 48.0
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 9.6e-18 95.1 112 63.4
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 5.4e-13 79.3 113 53.1
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-10 71.6 57 77.2
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-10 70.9 94 50.0
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 3.3e-10 70.1 95 52.6
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 3.8e-06 56.6 35 80.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 3.8e-06 56.6 141 39.0


User provided reference genes

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