Gene: AT3G18790

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G18790
  • Transcript Identifier AT3G18790.1
  • Gene Type Coding gene
  • Location Chr3 : 6477853-6478755 : positive

Gene Family Information

  • ID HOM05D004662
  • #Genes/#Species 156/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G18790.1
  • uniprot Q9LS97

Descriptions

  • Description pre-mRNA-splicing factor ISY1-like protein
  • Computational description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000350
IEA
GOA Databasegeneration of catalytic spliceosome for second transesterification step
GO:0000350
IBA
Gene Ontologygeneration of catalytic spliceosome for second transesterification step1
GO:0000350
IEA
InterProgeneration of catalytic spliceosome for second transesterification step
GO:0000389
IBA
Gene OntologymRNA 3'-splice site recognition1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol2
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0071020
IBA
Gene Ontologypost-spliceosomal complex1
GO:0000974
IBA
Gene OntologyPrp19 complex1
GO:0071014
IBA
Gene Ontologypost-mRNA release spliceosomal complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029012 Helix hairpin bin domain superfamily
IPR009360 Pre-mRNA-splicing factor Isy1
IPR037200 Pre-mRNA-splicing factor Isy1 superfamily
Mapman id Description
16.2.5.2.4 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component ISY1/MAC8