Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 2.6e-231 805.1 419 100.0
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.5e-181 639.0 420 78.6
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 3.0e-179 632.1 422 80.1
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 6.8e-179 630.9 416 78.6
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 3.7e-177 625.2 419 77.8
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 9.2e-176 620.5 421 77.2
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 3.8e-174 615.1 425 80.9
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.8e-172 609.0 371 80.9
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 8.9e-171 604.0 360 83.3
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 1.2e-170 603.6 360 81.7
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.6e-170 602.4 434 74.2
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 2.6e-170 602.4 456 71.1
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 4.4e-170 601.7 369 81.3
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 5.7e-170 601.3 363 83.2
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 5.7e-170 601.3 361 83.7
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 1.7e-169 599.7 431 72.6
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.7e-169 599.7 357 83.2
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.7e-169 599.7 359 83.0
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.9e-169 599.0 424 79.0
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 3.7e-169 598.6 413 78.9
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 3.7e-169 598.6 375 84.0
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 4.9e-169 598.2 417 75.1
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 4.9e-169 598.2 415 74.7
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 4.9e-169 598.2 423 75.2
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 4.9e-169 598.2 365 81.1
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 6.4e-169 597.8 360 86.9
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 6.4e-169 597.8 417 73.6
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 8.3e-169 597.4 376 80.1
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 8.3e-169 597.4 359 81.9
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 8.3e-169 597.4 367 80.9
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.1e-168 597.0 425 78.8
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 1.1e-168 597.0 420 78.8
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 1.4e-168 596.7 381 78.5
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 1.4e-168 596.7 422 78.4
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.4e-168 596.7 361 82.3
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.4e-168 595.9 381 78.5
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 2.4e-168 595.9 368 81.0
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 4.1e-168 595.1 421 73.6
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 4.1e-168 595.1 359 82.5
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.2e-167 593.6 385 77.9
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.2e-167 593.6 359 81.9
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 2.0e-167 592.8 369 84.0
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 3.5e-167 592.0 364 85.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 5.9e-167 591.3 398 76.9
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 7.8e-167 590.9 358 81.6
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 7.8e-167 590.9 361 79.5
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.7e-166 589.7 364 80.8
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 3.0e-166 589.0 360 80.0
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 5.0e-166 588.2 362 85.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 6.6e-166 587.8 373 79.9
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 8.6e-166 587.4 367 79.3
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.5e-165 586.6 424 77.1
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.5e-165 586.6 382 77.2
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.9e-165 586.3 360 79.4
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.9e-165 586.3 422 72.3
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 2.5e-165 585.9 360 79.4
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 2.5e-165 585.9 360 79.4
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 2.5e-165 585.9 360 79.4
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 3.3e-165 585.5 360 79.4
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 3.3e-165 585.5 357 86.3
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 3.3e-165 585.5 422 73.9
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 4.3e-165 585.1 359 79.9
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 5.6e-165 584.7 371 79.0
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 7.3e-165 584.3 390 80.8
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 7.3e-165 584.3 406 73.2
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 7.3e-165 584.3 360 83.6
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 9.5e-165 583.9 360 84.2
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.2e-164 583.6 358 79.3
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.6e-164 583.2 425 74.4
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 2.1e-164 582.8 388 80.2
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.8e-164 582.4 421 77.0
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 6.2e-164 581.3 348 86.5
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 8.0e-164 580.9 442 70.1
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.8e-163 579.7 367 83.1
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 2.3e-163 579.3 361 78.7
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 3.1e-163 578.9 389 80.5
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.2e-163 578.2 355 84.8
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 6.8e-163 577.8 401 74.3
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 6.8e-163 577.8 375 75.5
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 8.9e-163 577.4 420 75.7
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 2.6e-162 575.9 360 83.6
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 1.7e-161 573.2 382 76.4
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.2e-161 572.8 327 89.6
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.2e-161 572.8 327 89.6
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 2.9e-161 572.4 357 80.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 4.9e-161 571.6 411 76.4
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 1.1e-160 570.5 370 78.4
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 4.1e-160 568.5 352 79.8
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 7.0e-160 567.8 352 80.1
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 7.0e-160 567.8 382 79.8
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 3.5e-159 565.5 374 75.4
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.7e-158 563.1 359 76.9
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 3.4e-154 548.9 352 79.5
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 5.8e-154 548.1 492 61.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 5.8e-154 548.1 344 78.8
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 7.5e-154 547.7 351 82.3
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 1.7e-153 546.6 360 76.1
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 4.9e-153 545.0 451 67.8
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 7.1e-152 541.2 348 83.3
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 6.2e-148 528.1 428 68.9
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 6.2e-148 528.1 327 76.5
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.2e-146 523.9 537 58.5
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.2e-146 523.9 358 77.4
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 3.4e-146 522.3 391 69.1
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.1e-141 507.3 544 56.2
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 5.2e-139 498.4 360 76.1
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.5e-138 496.9 400 63.0
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 9.3e-136 487.6 485 59.4
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.1e-120 437.6 450 60.9
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.9e-120 436.8 423 59.3
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 7.4e-117 424.9 335 68.7
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 6.7e-110 401.7 203 95.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 4.3e-109 399.1 399 55.9
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 2.9e-105 386.3 362 59.4
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.4e-98 362.8 209 84.2
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 2.6e-77 293.5 298 55.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.0e-62 243.0 346 44.5
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 3.1e-59 233.4 114 96.5
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.7e-49 201.1 181 61.3
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.5e-45 188.0 122 75.4
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 3.2e-43 180.3 111 79.3
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 2.5e-40 170.6 211 50.2
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 5.6e-32 142.9 69 94.2
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.9e-28 130.6 73 89.0
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 5.4e-27 126.3 85 70.6
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 7.8e-26 122.5 84 69.0
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 8.4e-20 102.4 53 84.9
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 5.4e-19 99.8 103 52.4
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.5e-16 90.9 43 95.3
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 3.8e-12 77.0 63 61.9
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 6.4e-12 76.3 62 59.7
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.2e-11 73.6 43 81.4
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 5.4e-11 73.2 71 59.2
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.8e-09 68.2 38 76.3
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.8e-07 60.8 46 60.9
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 8.1e-07 59.3 39 66.7


User provided reference genes

Program Settings