Gene: AT5G23120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G23120
  • Transcript Identifier AT5G23120.2
  • Gene Type Coding gene
  • Location Chr5 : 7778085-7780463 : positive

Gene Family Information

  • ID HOM05D005984
  • #Genes/#Species 131/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G23120.2
  • symbol HCF136
  • full_name HIGH CHLOROPHYLL FLUORESCENCE 136
  • uniprot O82660

Descriptions

  • Description photosystem II stability/assembly factor, chloroplast (HCF136)
  • Computational description HIGH CHLOROPHYLL FLUORESCENCE 136 (HCF136); INVOLVED IN: response to cadmium ion, plastid organization, protein complex assembly; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BNR repeat (InterPro:IPR002860), Photosystem II stability/assembly factor, HCF136 (InterPro:IPR016705), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0015979
IEA
GOA Databasephotosynthesis
GO:0009657
IMP
Gene Ontologyplastid organization1
GO:0065003
IMP
Gene Ontologyprotein-containing complex assembly2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009579
IDA
IEA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid3
GO:0016020
IEA
GOA Databasemembrane
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast4
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid5
GO:0009523
IEA
GOA Databasephotosystem II
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid6
GO:0009535
IDA
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009535
HDA
Gene Ontologychloroplast thylakoid membrane7
GO:0031977
IDA
GOA Databasethylakoid lumen
GO:0031977
HDA
Gene Ontologythylakoid lumen8
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope6
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma9
GO:0009533
IDA
Gene Ontologychloroplast stromal thylakoid1
GO:0009543
HDA
Gene Ontologychloroplast thylakoid lumen8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain
Mapman id Description
1.1.1.3.5 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (HCF136)