Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 9.8e-305 1050.0 881 100.0
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.6e-217 760.4 923 73.1
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.8e-96 358.2 851 61.7
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 1.5e-95 355.1 849 62.2
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 6.3e-94 349.7 849 58.7
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 2.4e-93 347.8 837 57.6
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 2.7e-92 344.4 294 57.5
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 7.8e-84 316.2 834 49.5
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.1e-82 312.4 834 53.2
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 4.7e-81 307.0 868 51.5
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 1.4e-80 305.4 860 56.2
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 1.2e-79 302.4 837 52.4
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 3.7e-78 297.4 859 50.1
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.3e-75 288.9 173 72.8
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 2.1e-73 281.6 849 54.2
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 3.6e-73 280.8 851 47.8
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 4.7e-73 280.4 850 55.1
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 6.2e-73 280.0 848 54.2
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.1e-72 277.7 905 52.9
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 4.0e-72 277.3 909 52.7
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 5.2e-72 276.9 801 49.4
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 2.6e-71 274.6 494 35.4
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 3.4e-71 274.2 841 51.2
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 5.8e-71 273.5 842 50.4
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 4.9e-70 270.4 852 52.0
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 4.9e-70 270.4 852 52.0
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 1.1e-69 269.2 918 50.8
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 1.9e-69 268.5 845 57.0
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 7.8e-68 263.1 849 53.8
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 5.1e-67 260.4 148 77.7
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 1.6e-65 255.4 852 55.5
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 2.1e-65 255.0 148 75.7
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 5.8e-63 246.9 148 75.7
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 7.6e-63 246.5 833 47.8
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.7e-62 245.4 152 71.7
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 1.7e-62 245.4 148 74.3
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 2.2e-62 245.0 148 72.3
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 2.9e-62 244.6 147 72.1
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 2.9e-62 244.6 853 43.7
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 3.8e-62 244.2 148 73.0
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 8.4e-62 243.0 144 77.8
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 1.4e-61 242.3 144 73.6
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 1.9e-61 241.9 148 74.3
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 1.9e-61 241.9 148 71.6
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 7.1e-61 240.0 144 74.3
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 9.2e-61 239.6 152 74.3
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 3.5e-60 237.7 144 71.5
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 6.0e-60 236.9 147 71.4
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.3e-59 235.7 145 70.3
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 1.3e-59 235.7 144 72.9
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 1.3e-59 235.7 148 73.6
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 1.7e-59 235.3 157 68.8
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.7e-59 235.3 144 70.8
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.7e-59 235.3 143 71.3
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.7e-59 235.3 143 70.6
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 1.7e-59 235.3 149 67.1
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 2.3e-59 235.0 149 67.8
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 2.3e-59 235.0 143 71.3
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 6.6e-59 233.4 149 70.5
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.1e-58 232.6 226 56.6
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 1.9e-58 231.9 150 69.3
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 4.3e-58 230.7 149 67.1
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 5.6e-58 230.3 148 67.6
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 5.6e-58 230.3 150 69.3
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 7.3e-58 229.9 149 67.8
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 7.3e-58 229.9 148 67.6
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 7.3e-58 229.9 148 70.9
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 9.6e-58 229.6 149 67.8
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 9.6e-58 229.6 148 67.6
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 9.6e-58 229.6 148 66.2
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 1.2e-57 229.2 148 67.6
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 3.6e-57 227.6 148 66.9
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 8.1e-57 226.5 149 63.8
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 1.1e-56 226.1 147 67.3
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 1.8e-56 225.3 144 71.5
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 2.4e-56 224.9 148 66.9
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 4.0e-56 224.2 148 66.9
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 8.9e-56 223.0 148 66.9
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 1.5e-55 222.2 144 70.1
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 2.0e-55 221.9 128 74.2
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 2.0e-55 221.9 144 70.1
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 2.6e-55 221.5 144 70.1
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 5.8e-55 220.3 148 65.5
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 5.8e-55 220.3 146 69.9
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 1.7e-54 218.8 837 52.4
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 4.9e-54 217.2 135 71.1
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 6.4e-54 216.9 139 70.5
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 3.3e-50 204.5 142 62.7
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 5.6e-50 203.8 142 62.7
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.6e-49 202.2 149 61.7
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 1.4e-48 199.1 127 69.3
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 1.4e-48 199.1 149 59.1
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 5.3e-48 197.2 148 59.5
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 5.3e-48 197.2 239 45.2
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 5.3e-48 197.2 277 44.0
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.6e-47 194.9 277 42.6
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 3.8e-46 191.0 96 88.5
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 6.4e-46 190.3 256 42.2
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 2.9e-38 164.9 147 55.8
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 3.2e-37 161.4 216 41.7
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 1.2e-36 159.5 97 70.1
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 1.2e-36 159.5 131 55.7
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 3.0e-35 154.8 122 59.0
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.1e-34 152.9 122 59.0
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.8e-33 147.5 128 56.2
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 3.1e-32 144.8 110 61.8
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 6.9e-32 143.7 122 56.6
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 2.0e-31 142.1 122 54.1
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 4.9e-30 137.5 138 45.7
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.4e-29 136.0 76 80.3
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 3.2e-29 134.8 122 46.7
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 4.2e-29 134.4 76 77.6
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 1.2e-28 132.9 122 45.9
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 1.3e-27 129.4 118 57.6
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 3.0e-27 128.3 113 54.0
Rhsim09G0172900 Rhododendron simsii HOM05D006106 ORTHO05D007662 5.1e-27 127.5 80 77.5
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 1.1e-26 126.3 122 46.7
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 1.6e-25 122.5 88 62.5
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.5e-23 115.9 66 77.3
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 6.5e-22 110.5 128 45.3
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 3.2e-21 108.2 83 51.8
Rhsim03G0025900 Rhododendron simsii HOM05D036651 ORTHO05D034875 1.1e-18 99.8 116 50.0
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 1.9e-18 99.0 86 54.7
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 5.7e-18 97.4 70 62.9
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 1.6e-17 95.9 72 54.2
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 1.4e-16 92.8 99 48.5
Rhsim03G0026600 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.0e-14 86.7 60 70.0
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 7.2e-13 80.5 113 39.8
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 1.1e-10 73.2 39 79.5
Actinidia09322 Actinidia chinensis HOM05D006106 ORTHO05D007662 2.6e-10 72.0 41 68.3
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 5.7e-10 70.9 68 55.9
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 7.4e-10 70.5 253 25.3
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 7.4e-10 70.5 101 33.7
Gohir.D10G102200 Gossypium hirsutum HOM05D006414 ORTHO05D007780 4.8e-09 67.8 111 34.2
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 3.1e-08 65.1 281 24.6
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 3.1e-08 65.1 101 31.7
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 6.9e-08 63.9 160 28.1
Duzib147G0014 Durio zibethinus HOM05D006414 ORTHO05D007780 9.1e-08 63.5 91 36.3
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 1.5e-07 62.8 256 23.0
BcaNung00882 Brassica carinata HOM05D006414 ORTHO05D007780 3.4e-07 61.6 77 37.7
BcaNung06694 Brassica carinata HOM05D006414 ORTHO05D007780 3.4e-07 61.6 77 37.7
A01p00510 Brassica napus HOM05D006414 ORTHO05D007780 3.4e-07 61.6 77 37.7
C01p00660 Brassica napus HOM05D006414 ORTHO05D007780 3.4e-07 61.6 77 37.7
Thhalv10024997m.g Eutrema salsugineum HOM05D006414 ORTHO05D007780 3.4e-07 61.6 77 37.7
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 3.4e-07 61.6 249 23.7
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.5e-07 61.2 101 30.7
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 5.9e-07 60.8 252 22.2
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.9e-07 60.8 243 23.5
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 5.9e-07 60.8 101 30.7
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.9e-07 60.8 257 22.2
THA.LOC104807720 Tarenaya hassleriana HOM05D006414 ORTHO05D007780 5.9e-07 60.8 77 36.4
BraA01t00058Z Brassica rapa HOM05D006414 ORTHO05D007780 7.7e-07 60.5 69 40.6
Sp7g36270 Schrenkiella parvula HOM05D006414 ORTHO05D007780 7.7e-07 60.5 77 36.4
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 1.0e-06 60.1 101 31.7
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.0e-06 60.1 257 23.0
AL7G11770 Arabidopsis lyrata HOM05D006414 ORTHO05D007780 1.3e-06 59.7 77 36.4
AT4G39620 Arabidopsis thaliana HOM05D006414 ORTHO05D007780 1.3e-06 59.7 77 36.4
Carub.0007s0149 Capsella rubella HOM05D006414 ORTHO05D007780 1.3e-06 59.7 77 36.4
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 1.3e-06 59.7 155 25.8
CARHR247110 Cardamine hirsuta HOM05D006414 ORTHO05D007780 1.7e-06 59.3 77 36.4
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.7e-06 59.3 257 25.7
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 2.2e-06 58.9 112 29.5
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.9e-06 58.5 101 29.7
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 2.9e-06 58.5 257 22.2
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 3.8e-06 58.2 101 29.7
CAN.G996.9 Capsicum annuum HOM05D002479 ORTHO05D002675 3.8e-06 58.2 100 30.0
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 3.8e-06 58.2 105 32.4
Dinv11886 Davidia involucrata HOM05D006596 ORTHO05D008497 3.8e-06 58.2 121 31.4
Aa31LG8G9510 Aethionema arabicum HOM05D002479 ORTHO05D002675 5.0e-06 57.8 236 24.2
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 5.0e-06 57.8 262 22.1
ECA246G4149 Erigeron canadensis HOM05D002479 ORTHO05D002675 5.0e-06 57.8 304 23.0
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.0e-06 57.8 257 22.2
Manes.13G150200 Manihot esculenta HOM05D002479 ORTHO05D002675 5.0e-06 57.8 249 24.9
QL08p037589 Quercus lobata HOM05D002479 ORTHO05D002675 5.0e-06 57.8 257 23.3
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 6.5e-06 57.4 257 21.8
arahy.Tifrunner.gnm1.ann1.0PND55 Arachis hypogaea HOM05D002479 ORTHO05D002675 8.5e-06 57.0 226 23.0
Haze_13105 Corylus avellana HOM05D002479 ORTHO05D002675 8.5e-06 57.0 255 23.9
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 8.5e-06 57.0 116 26.7


User provided reference genes

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