Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.5e-223 777.7 419 100.0
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.4e-121 438.3 381 59.3
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.9e-96 357.1 435 46.0
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.0e-94 351.3 411 47.0
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 8.8e-94 348.2 477 44.2
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 4.4e-93 345.9 434 47.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-91 341.3 441 44.7
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.4e-90 336.3 397 47.9
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.7e-90 335.1 397 47.9
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.9e-89 333.2 400 48.2
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.1e-87 327.0 444 51.8
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.8e-86 323.9 444 44.1
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.8e-86 321.6 468 42.3
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 7.7e-82 308.5 451 41.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.0e-81 308.1 445 41.8
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 5.0e-81 305.8 445 41.3
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 4.2e-80 302.8 444 41.2
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.6e-79 299.7 441 40.6
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 4.7e-79 299.3 312 50.3
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 1.7e-76 290.8 313 48.9
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.9e-72 277.3 440 40.2
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.2e-71 274.6 312 48.4
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 1.4e-70 271.2 267 52.4
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 1.8e-70 270.8 430 41.6
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.0e-69 267.3 312 50.0
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.3e-68 264.6 311 47.3
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 3.7e-68 263.1 313 47.6
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 1.4e-67 261.2 309 47.9
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 2.7e-66 256.9 316 47.5
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 4.5e-66 256.1 435 40.2
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 7.7e-66 255.4 315 46.7
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-65 254.6 294 50.0
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 1.7e-65 254.2 314 47.8
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.3e-65 253.8 322 46.9
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 5.0e-65 252.7 317 44.2
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.5e-64 251.1 316 46.8
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.5e-64 251.1 318 47.2
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.9e-64 250.8 319 45.5
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 3.3e-64 250.0 290 48.3
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 9.5e-64 248.4 272 48.5
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.2e-63 248.1 331 43.5
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 4.7e-63 246.1 316 47.5
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 5.2e-62 242.7 327 45.3
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 5.2e-62 242.7 304 47.7
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 6.8e-62 242.3 325 46.5
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.4e-61 240.0 289 47.1
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 3.4e-61 240.0 309 46.3
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.4e-61 239.6 286 48.3
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 5.7e-61 239.2 311 46.3
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.7e-60 237.7 418 37.3
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 6.3e-60 235.7 310 42.6
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 8.3e-60 235.3 289 46.4
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.1e-59 235.0 422 38.2
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.1e-59 235.0 310 42.6
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 5.4e-59 232.6 318 42.8
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.0e-59 232.3 310 42.3
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.2e-58 231.5 327 44.6
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.6e-58 231.1 304 43.8
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.5e-58 229.9 305 40.7
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.5e-58 229.9 314 43.9
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 3.5e-58 229.9 318 43.4
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 4.5e-58 229.6 322 44.4
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 4.5e-58 229.6 271 45.4
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 7.8e-58 228.8 314 42.4
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.0e-57 228.4 438 37.4
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.0e-57 228.4 438 37.4
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.7e-57 227.6 317 42.9
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.7e-57 227.6 315 39.7
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 8.6e-57 225.3 300 42.0
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.1e-56 224.9 320 43.8
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.5e-56 223.8 324 41.0
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 4.3e-56 223.0 335 40.9
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 5.6e-56 222.6 314 43.9
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.0e-54 218.4 322 41.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 1.0e-54 218.4 436 36.2
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 1.4e-54 218.0 338 40.5
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.8e-54 217.6 432 34.7
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.8e-54 217.6 309 43.0
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 1.8e-54 217.6 312 43.3
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 6.8e-54 215.7 326 41.1
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.7e-52 211.1 313 40.3
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 3.2e-51 206.8 309 41.1
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.6e-50 203.0 296 44.9
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 6.6e-49 199.1 260 43.5
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.9e-48 197.6 297 40.1
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 3.3e-48 196.8 284 42.6
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 2.1e-47 194.1 309 38.5
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 1.1e-46 191.8 286 40.9
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.8e-46 191.0 308 39.0
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 8.9e-46 188.7 262 43.5
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 3.4e-45 186.8 339 36.9
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.3e-44 184.9 278 39.6
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 3.7e-44 183.3 298 39.6
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 4.9e-44 183.0 292 40.4
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 6.4e-44 182.6 287 39.0
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 8.3e-44 182.2 280 39.6
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.4e-43 181.4 308 37.7
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 5.4e-43 179.5 290 41.4
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 9.2e-43 178.7 294 37.8
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.2e-42 178.3 290 38.3
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.2e-42 178.3 283 40.3
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.6e-42 177.9 294 37.4
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.6e-42 177.9 294 37.4
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.6e-42 177.9 290 41.0
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.1e-42 177.6 294 37.8
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 6.0e-42 176.0 294 37.1
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 6.0e-42 176.0 293 37.9
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.0e-41 173.7 281 38.4
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 3.0e-41 173.7 302 38.1
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.9e-40 171.0 265 38.9
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.0e-38 163.3 325 33.8
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 5.2e-38 162.9 349 35.5
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 3.4e-37 160.2 155 54.2
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.9e-36 157.1 331 32.9
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.9e-36 156.4 266 39.1
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 1.6e-31 141.4 259 38.2
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.6e-31 141.4 225 37.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.7e-31 139.8 335 32.2
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.7e-31 139.8 162 50.6
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.8e-30 137.9 368 31.5
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 1.5e-29 134.8 157 45.9
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 3.2e-27 127.1 156 44.9
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 7.1e-27 125.9 164 41.5
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.6e-26 124.8 100 55.0
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.7e-25 121.3 207 38.2
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.5e-24 118.2 260 33.8
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.2e-23 115.2 291 30.9
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-23 114.8 251 35.1
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-23 114.8 251 35.1
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 2.1e-23 114.4 156 45.5
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-22 112.1 406 26.8
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.8e-22 111.3 232 33.6
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.1e-22 110.5 381 27.8
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 6.9e-22 109.4 160 40.0
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 2.2e-20 104.4 143 42.0
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.9e-20 104.0 159 40.9
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.9e-20 104.0 399 25.8
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 2.4e-19 100.9 183 36.6
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 3.2e-19 100.5 94 54.3
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 9.3e-19 99.0 116 45.7
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 4.6e-18 96.7 143 39.2
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 3.9e-17 93.6 119 44.5
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 4.8e-15 86.7 144 36.8
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 1.7e-12 78.2 191 33.0
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 8.4e-12 75.9 259 29.3
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.4e-11 75.1 287 24.7
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.0e-10 69.7 237 27.4
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 5.1e-09 66.6 279 26.5
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 6.7e-09 66.2 130 33.1
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.6e-08 62.4 196 29.6
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 1.8e-06 58.2 126 31.0


User provided reference genes

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