Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.5e-261 905.6 437 100.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 8.1e-151 537.7 334 80.5
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.1e-142 510.8 333 76.3
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.5e-141 506.9 320 76.2
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 5.8e-141 505.0 331 74.3
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.7e-140 503.4 333 75.7
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.8e-140 502.3 333 75.1
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 8.4e-140 501.1 333 75.4
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.2e-139 499.2 346 72.5
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 9.3e-139 497.7 333 74.8
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-138 497.3 340 73.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 2.1e-138 496.5 333 74.2
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 4.6e-138 495.4 333 74.2
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.8e-137 493.4 320 76.9
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.9e-136 490.0 333 72.4
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 2.5e-136 489.6 342 70.2
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.3e-136 489.2 333 72.7
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.3e-135 487.3 382 65.2
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.6e-135 486.9 333 71.8
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.6e-135 486.9 342 70.5
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.6e-135 486.9 327 73.1
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.2e-135 486.5 335 70.7
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.8e-135 486.1 320 75.0
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 3.7e-135 485.7 342 71.3
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 4.8e-135 485.3 320 75.6
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 8.2e-135 484.6 322 73.6
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 8.2e-135 484.6 333 71.2
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.1e-134 484.2 333 70.9
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-134 484.2 333 71.2
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.4e-134 483.8 322 73.9
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.4e-134 483.8 333 71.5
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.4e-134 483.8 342 69.9
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.1e-134 482.6 333 71.2
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 4.1e-134 482.3 333 70.0
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 4.1e-134 482.3 357 68.6
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.1e-134 482.3 320 74.1
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 5.3e-134 481.9 345 69.9
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.2e-133 480.7 320 72.5
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 2.0e-133 479.9 344 70.1
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.5e-133 478.8 323 72.8
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 5.9e-133 478.4 333 71.5
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.7e-133 478.0 333 71.2
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.3e-132 477.2 332 71.4
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.3e-132 477.2 333 70.9
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.7e-132 476.9 333 69.7
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 5.0e-132 475.3 333 69.7
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 8.5e-132 474.6 326 71.8
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 8.5e-132 474.6 333 70.3
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.4e-131 473.8 326 73.3
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 4.2e-131 472.2 326 69.9
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 7.2e-131 471.5 321 71.0
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 7.2e-131 471.5 319 72.7
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.4e-131 471.1 325 70.8
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 9.4e-131 471.1 325 70.8
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 9.4e-131 471.1 326 69.0
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.2e-130 470.7 334 68.9
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.2e-130 470.7 331 70.4
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 2.1e-130 469.9 333 71.2
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.1e-130 469.9 333 70.0
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.7e-130 469.5 326 69.0
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.7e-130 469.5 333 70.0
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.6e-130 468.8 326 69.3
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 6.1e-130 468.4 326 69.3
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.0e-129 467.6 320 71.9
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.8e-129 466.8 330 67.9
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 3.0e-129 466.1 333 69.4
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 3.9e-129 465.7 326 70.6
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.1e-129 465.3 388 62.4
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 9.7e-128 461.1 325 68.9
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.7e-127 460.3 331 67.7
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.7e-127 460.3 334 67.1
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.7e-127 460.3 334 67.1
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.2e-127 459.9 330 68.5
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.2e-127 459.9 334 67.1
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.8e-127 459.5 334 67.1
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.8e-127 459.5 334 67.1
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.8e-127 459.5 334 67.1
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 8.2e-127 458.0 320 69.1
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 8.2e-127 458.0 335 67.2
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.4e-126 456.4 334 67.1
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.1e-126 456.1 337 66.5
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 4.1e-126 455.7 334 67.7
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 5.3e-126 455.3 334 67.7
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 6.9e-126 454.9 335 68.1
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 6.9e-126 454.9 319 70.2
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 5.9e-125 451.8 334 67.7
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 5.9e-125 451.8 333 68.2
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 5.9e-125 451.8 329 66.9
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.7e-124 450.3 345 67.0
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.1e-123 447.6 378 62.2
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.4e-123 444.5 374 60.4
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 2.1e-122 443.4 324 69.1
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.1e-122 443.4 333 65.8
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 6.1e-122 441.8 333 64.6
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.9e-122 441.4 325 67.1
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.0e-121 439.5 333 66.4
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.0e-121 439.5 333 66.4
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.1e-120 437.6 313 70.9
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.5e-120 437.2 333 64.3
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.8e-119 432.2 327 65.7
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.1e-118 431.0 317 67.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 4.1e-118 429.1 326 64.7
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.0e-116 424.5 333 62.2
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.7e-116 423.7 320 63.8
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.2e-116 423.3 333 64.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.5e-116 421.8 335 61.5
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 5.5e-115 418.7 320 62.8
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.2e-114 417.5 333 63.4
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.6e-114 417.2 321 62.9
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.8e-113 413.7 423 51.8
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 3.9e-113 412.5 328 63.1
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.0e-112 410.2 321 64.2
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 2.2e-111 406.8 279 72.4
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 2.2e-111 406.8 335 62.4
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.6e-109 400.6 276 72.5
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.0e-109 400.2 320 58.8
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 5.0e-108 395.6 333 62.5
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.1e-106 390.2 296 64.5
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 9.7e-104 381.3 333 56.5
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 2.2e-103 380.2 332 57.8
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 2.8e-103 379.8 319 58.3
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 3.8e-100 369.4 257 72.4
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 5.0e-100 369.0 321 55.5
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 4.0e-97 359.4 330 53.9
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 3.4e-96 356.3 300 60.3
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.2e-85 321.2 274 59.1
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.9e-85 318.9 260 57.7
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 8.9e-81 305.1 262 58.4
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 2.6e-80 303.5 234 65.0
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 9.8e-80 301.6 319 52.7
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.7e-79 300.8 320 49.1
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.9e-75 287.3 258 54.3
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 8.1e-66 255.4 262 50.8
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 1.4e-65 254.6 161 75.2
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.2e-65 252.7 282 47.9
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.2e-61 241.5 146 76.7
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 6.2e-58 229.2 132 81.8
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.2e-55 220.7 170 64.7
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.9e-49 199.1 118 78.0
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.2e-48 198.4 118 77.1
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 4.8e-34 149.8 103 71.8
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.0e-24 117.9 75 65.3
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.5e-24 116.7 203 39.9
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 5.5e-22 109.8 64 76.6
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.2e-21 108.6 66 74.2
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 4.1e-17 93.6 59 78.0
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 2.5e-14 84.3 76 56.6
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 5.5e-14 83.2 138 38.4
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 3.9e-12 77.0 57 66.7
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 4.3e-11 73.6 78 51.3
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 9.7e-11 72.4 41 78.0
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 2.2e-10 71.2 216 27.8
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.1e-09 68.9 228 25.9
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 5.9e-08 63.2 220 26.8
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 6.5e-07 59.7 35 82.9
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.4e-06 58.5 86 34.9
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 5.5e-06 56.6 211 26.5


User provided reference genes

Program Settings