Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03686 Vaccinium macrocarpon HOM05D006172 ORTHO05D005515 0.0e+00 2142.9 1256 100.0
Rhsim13G0154200 Rhododendron simsii HOM05D006172 ORTHO05D005515 0.0e+00 1461.8 1104 78.4
CSS0050420 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 0.0e+00 1298.5 1061 74.6
CSS0038964 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 0.0e+00 1283.9 1061 74.1
GSVIVG01012726001 Vitis vinifera HOM05D006172 ORTHO05D005515 0.0e+00 1088.6 1059 66.3
Lj1A1230T62 Lonicera japonica HOM05D006172 ORTHO05D005515 1.6e-308 1063.1 1080 63.7
TAR626G1786 Trochodendron aralioides HOM05D006172 ORTHO05D005515 6.7e-307 1057.7 1077 60.0
Potri.004G015200 Populus trichocarpa HOM05D006172 ORTHO05D005515 1.2e-300 1036.9 1068 58.8
COL.COLO4_31773 Corchorus olitorius HOM05D006172 ORTHO05D005515 4.7e-300 1035.0 1063 63.5
Duzib192G0085 Durio zibethinus HOM05D006172 ORTHO05D005515 6.1e-300 1034.6 1060 62.6
QL05p073195 Quercus lobata HOM05D006172 ORTHO05D005515 1.1e-298 1030.4 1059 62.9
Atru.chr10.2219 Acer truncatum HOM05D006172 ORTHO05D005515 2.8e-297 1025.8 1060 59.7
Nn1g07129 Nelumbo nucifera HOM05D006172 ORTHO05D005515 8.2e-297 1024.2 1079 61.6
Sabra04G0007400 Salix brachista HOM05D006172 ORTHO05D005515 2.4e-296 1022.7 1090 54.4
Sopen05g034060 Solanum pennellii HOM05D006172 ORTHO05D005515 1.0e-294 1017.3 1063 61.0
Lalb_Chr13g0304211 Lupinus albus HOM05D006172 ORTHO05D005515 3.8e-294 1015.4 1065 60.0
Medtr4g132120 Medicago truncatula HOM05D006172 ORTHO05D005515 3.8e-294 1015.4 1064 60.5
Gohir.D05G173300 Gossypium hirsutum HOM05D006172 ORTHO05D005515 1.1e-293 1013.8 1070 54.6
Gorai.009G178500 Gossypium raimondii HOM05D006172 ORTHO05D005515 4.7e-292 1008.4 1067 57.2
Nitab4.5_0006322g0020 Nicotiana tabacum HOM05D006172 ORTHO05D005515 1.4e-291 1006.9 1071 55.7
HanXRQChr05g0129541 Helianthus annuus HOM05D006172 ORTHO05D005515 2.3e-291 1006.1 1059 62.4
HanXRQChr05g0129551 Helianthus annuus HOM05D006172 ORTHO05D005515 2.3e-291 1006.1 1059 62.4
DCAR_028182 Daucus carota HOM05D006172 ORTHO05D005515 8.8e-291 1004.2 1067 61.4
Cc09_g01690 Coffea canephora HOM05D006172 ORTHO05D005515 1.7e-289 1000.0 1065 62.9
Ca_21083_v3 Cicer arietinum L. HOM05D006172 ORTHO05D005515 8.3e-289 997.7 1070 62.1
CANSAT56G2229 Cannabis sativa HOM05D006172 ORTHO05D005515 1.4e-288 996.9 1057 61.2
arahy.Tifrunner.gnm1.ann1.3R4FRS Arachis hypogaea HOM05D006172 ORTHO05D005515 7.0e-288 994.6 1062 62.5
Lj4g0023330 Lotus japonicus HOM05D006172 ORTHO05D005515 7.0e-288 994.6 1064 60.2
Aqoxy1G02151 Aquilegia oxysepala HOM05D006172 ORTHO05D005515 2.7e-287 992.6 1063 56.5
Hund21409 Selenicereus undatus HOM05D006172 ORTHO05D005515 4.5e-287 991.9 1060 56.9
CAN.G694.35 Capsicum annuum HOM05D006172 ORTHO05D005515 1.1e-285 987.3 1061 59.4
MD10G1321300 Malus domestica HOM05D006172 ORTHO05D005515 1.1e-285 987.3 1062 62.1
Solyc05g055610.4 Solanum lycopersicum HOM05D006172 ORTHO05D005515 1.1e-285 987.3 1056 59.7
Glyma.07G260400 Glycine max HOM05D006172 ORTHO05D005515 1.5e-285 986.9 1062 58.0
arahy.Tifrunner.gnm1.ann1.GS5NL2 Arachis hypogaea HOM05D006172 ORTHO05D005515 1.9e-285 986.5 1061 60.4
Gohir.A05G170200 Gossypium hirsutum HOM05D006172 ORTHO05D005515 2.5e-285 986.1 1083 56.1
TWI38G1682 Tripterygium wilfordii HOM05D006172 ORTHO05D005515 3.2e-285 985.7 1067 61.5
RcHm_v2.0_Chr5g0003171 Rosa chinensis HOM05D006172 ORTHO05D005515 4.7e-284 981.9 1061 56.6
Oeu013636.1 Olea europaea HOM05D006172 ORTHO05D005515 8.0e-284 981.1 1055 61.4
PGR042G0524 Punica granatum HOM05D006172 ORTHO05D005515 1.0e-283 980.7 1063 61.0
Lsat_1_v5_gn_7_15980 Lactuca sativa HOM05D006172 ORTHO05D005515 2.0e-282 976.5 1069 61.8
PSO675G8381 Papaver somniferum HOM05D006172 ORTHO05D005515 3.4e-282 975.7 1062 57.3
SGA_v2.0_scaffold4G01916 Striga asiatica HOM05D006172 ORTHO05D005515 6.3e-281 971.5 1061 58.1
Peaxi162Scf00627g00035 Petunia axillaris HOM05D006172 ORTHO05D005515 8.3e-281 971.1 1055 57.5
AUR62021945 Chenopodium quinoa HOM05D006172 ORTHO05D005515 2.4e-280 969.5 1066 62.8
Eucgr.E04055 Eucalyptus grandis HOM05D006172 ORTHO05D005515 5.4e-280 968.4 1069 60.5
FvH4_3g02080 Fragaria vesca HOM05D006172 ORTHO05D005515 4.5e-279 965.3 1063 55.3
Ah.09g234910 Amaranthus hybridus HOM05D006172 ORTHO05D005515 2.9e-278 962.6 1057 59.2
Sp6g04230 Schrenkiella parvula HOM05D006172 ORTHO05D005515 5.0e-278 961.8 1052 60.2
ECA236G0092 Erigeron canadensis HOM05D006172 ORTHO05D005515 6.6e-278 961.4 1042 63.3
Migut.M01317 Erythranthe guttata HOM05D006172 ORTHO05D005515 4.3e-277 958.7 1059 53.9
Thhalv10028391m.g Eutrema salsugineum HOM05D006172 ORTHO05D005515 2.8e-276 956.1 1053 60.1
THA.LOC104813121 Tarenaya hassleriana HOM05D006172 ORTHO05D005515 4.7e-276 955.3 1061 60.2
Aa31LG9G9740 Aethionema arabicum HOM05D006172 ORTHO05D005515 8.9e-275 951.0 1053 57.7
FAN21G3941 Fragaria x ananassa HOM05D006172 ORTHO05D005515 8.9e-275 951.0 1052 55.3
ClCG01G022000 Citrullus lanatus HOM05D006172 ORTHO05D005515 1.2e-274 950.7 1078 59.7
Haze_06799 Corylus avellana HOM05D006172 ORTHO05D005515 5.7e-274 948.3 988 61.6
AT4G04670 Arabidopsis thaliana HOM05D006172 ORTHO05D005515 1.3e-273 947.2 1052 55.6
FAN25G0496 Fragaria x ananassa HOM05D006172 ORTHO05D005515 1.3e-273 947.2 1054 55.4
VMungo1215G3219 Vigna mungo HOM05D006172 ORTHO05D005515 4.9e-273 945.3 1053 58.4
AL6G48130 Arabidopsis lyrata HOM05D006172 ORTHO05D005515 1.6e-271 940.3 1052 55.7
EL10Ac8g20057 Beta vulgaris HOM05D006172 ORTHO05D005515 1.3e-270 937.2 1062 59.2
Carub.0006s3250 Capsella rubella HOM05D006172 ORTHO05D005515 2.3e-270 936.4 1052 55.8
Sed0002789 Sechium edule HOM05D006172 ORTHO05D005515 3.0e-270 936.0 1081 58.6
Sc05g0009930 Simmondsia chinensis HOM05D006172 ORTHO05D005515 8.6e-270 934.5 1031 60.0
Cpa.g.sc152.15 Carica papaya HOM05D006172 ORTHO05D005515 4.3e-269 932.2 1015 62.7
A03p30170 Brassica napus HOM05D006172 ORTHO05D005515 5.6e-269 931.8 1056 58.9
AUR62012709 Chenopodium quinoa HOM05D006172 ORTHO05D005515 5.6e-269 931.8 1057 61.3
Sc05g0009220 Simmondsia chinensis HOM05D006172 ORTHO05D005515 1.6e-268 930.2 1031 59.9
BolC3t15953H Brassica oleracea HOM05D006172 ORTHO05D005515 3.6e-268 929.1 1071 58.9
BraA03t12201Z Brassica rapa HOM05D006172 ORTHO05D005515 2.3e-267 926.4 1071 58.4
Dinv13892 Davidia involucrata HOM05D006172 ORTHO05D005515 6.8e-267 924.9 782 74.7
Ciclev10018338m.g Citrus clementina HOM05D006172 ORTHO05D005515 7.8e-263 911.4 1078 58.0
C03p36400 Brassica napus HOM05D006172 ORTHO05D005515 8.9e-259 897.9 1057 58.8
BcaB01g02576 Brassica carinata HOM05D006172 ORTHO05D005515 4.4e-258 895.6 1053 59.1
MELO3C007389.2 Cucumis melo HOM05D006172 ORTHO05D005515 8.3e-257 891.3 1026 57.4
Psat4g006680 Pisum sativum HOM05D006172 ORTHO05D005515 4.6e-255 885.6 997 61.0
ATR0794G123 Amborella trichopoda HOM05D006172 ORTHO05D005515 1.4e-240 837.4 1111 51.2
Nitab4.5_0000096g0040 Nicotiana tabacum HOM05D006172 ORTHO05D005515 4.2e-240 835.9 999 56.2
CiPaw.09G091900 Carya illinoinensis HOM05D006172 ORTHO05D005515 5.8e-234 815.5 778 68.4
Thecc.06G220200 Theobroma cacao HOM05D006172 ORTHO05D005515 1.2e-231 807.7 795 66.3
Manes.16G007200 Manihot esculenta HOM05D006172 ORTHO05D005515 3.0e-222 776.5 783 66.3
Prupe.4G021000 Prunus persica HOM05D006172 ORTHO05D005515 2.1e-215 753.8 780 65.5
PSO541G4594 Papaver somniferum HOM05D006172 ORTHO05D005515 2.2e-209 733.8 804 56.5
PGSC0003DMG400023367 Solanum tuberosum HOM05D006172 ORTHO05D005515 9.3e-208 728.4 761 62.8
SEGI_01208 Sequoiadendron giganteum HOM05D006172 ORTHO05D005515 3.1e-203 713.4 1191 45.5
CARHR252870 Cardamine hirsuta HOM05D006172 ORTHO05D005515 4.5e-202 709.5 778 60.7
Phvul.003G078700 Phaseolus vulgaris HOM05D006172 ORTHO05D005515 1.5e-194 684.5 750 60.8
CsaV3_6G049060 Cucumis sativus L. HOM05D006172 ORTHO05D005515 3.3e-189 666.8 741 62.1
Zm00001eb322630 Zea mays HOM05D006172 ORTHO05D005515 3.1e-179 633.6 946 48.7
Pp3c9_15020 Physcomitrium patens HOM05D006172 ORTHO05D005515 3.7e-172 610.1 1173 41.9
Mapoly0137s0034 Marchantia polymorpha HOM05D006172 ORTHO05D005515 1.1e-168 598.6 1122 46.6
MBI02_g46431_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 5.4e-163 579.7 737 56.7
HPP92_012401 Vanilla planifolia HOM05D006172 ORTHO05D005515 1.2e-159 568.5 794 50.4
CDE11G0909 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 1.8e-158 564.7 522 55.4
SHI02198 Sapria himalayana HOM05D006172 ORTHO05D005515 5.0e-153 546.6 994 40.3
unitig_37.g12153 Utricularia gibba HOM05D006172 ORTHO05D005515 4.0e-142 510.4 770 52.1
AagrBONN_evm.TU.Sc2ySwM_362.1356 Anthoceros agrestis HOM05D006172 ORTHO05D005515 3.0e-121 441.0 508 45.3
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 3.1e-118 431.0 404 59.4
CAN.G694.33 Capsicum annuum HOM05D006172 ORTHO05D005515 2.9e-92 344.7 342 56.7
SMO172G0113 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 2.9e-84 318.2 229 62.4
Oeu014516.1 Olea europaea HOM05D006172 ORTHO05D005515 5.0e-84 317.4 180 82.2
CBR_g48263 Chara braunii HOM05D006172 ORTHO05D005515 6.1e-82 310.5 431 42.7
Actinidia28669 Actinidia chinensis HOM05D006172 ORTHO05D005515 1.8e-81 308.9 258 67.8
MBI02_g21855_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 3.3e-80 304.7 205 70.2
MCO05G475 Micromonas commoda HOM05D006172 ORTHO05D005515 1.3e-76 292.7 421 41.1
CARHR252880 Cardamine hirsuta HOM05D006172 ORTHO05D005515 2.2e-63 248.8 214 64.0
Cre14.g626634 Chlamydomonas reinhardtii HOM05D006172 ORTHO05D005515 3.7e-63 248.1 1550 23.4
CDE11G0148 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 3.1e-62 245.0 367 43.3
Atru.chr10.2224 Acer truncatum HOM05D006172 ORTHO05D005515 4.1e-62 244.6 209 60.3
MBI02_g21856_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 1.9e-59 235.7 479 50.3
PRCOL_00000475 Prasinoderma coloniale HOM05D006172 ORTHO05D005515 4.2e-59 234.6 278 43.5
SMO139G0125 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 1.2e-58 233.0 431 35.0
SHI02199 Sapria himalayana HOM05D006172 ORTHO05D005515 1.3e-55 223.0 208 58.2
vmacro00611 Vaccinium macrocarpon HOM05D000031 ORTHO05D000030 1.8e-46 192.6 150 64.7
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 2.0e-45 189.1 152 64.5
TPR.G20315 Trifolium pratense HOM05D006172 ORTHO05D005515 9.5e-43 180.3 102 83.3
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 6.8e-41 174.1 162 54.3
TPR.G37083 Trifolium pratense HOM05D006172 ORTHO05D005515 4.4e-40 171.4 98 79.6
AagrBONN_evm.TU.Sc2ySwM_362.1355 Anthoceros agrestis HOM05D006172 ORTHO05D005515 2.9e-39 168.7 212 45.8
HPP92_012400 Vanilla planifolia HOM05D006172 ORTHO05D005515 6.4e-39 167.5 219 49.8
vmacro16406 Vaccinium macrocarpon HOM05D001545 ORTHO05D001600 1.4e-38 166.4 143 60.8
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.8e-34 152.1 230 40.4
HPP92_012316 Vanilla planifolia HOM05D006172 ORTHO05D005515 2.3e-28 132.5 236 39.8
unitig_37.g12155 Utricularia gibba HOM05D006172 ORTHO05D005515 2.9e-23 115.5 92 63.0
unitig_37.g12154 Utricularia gibba HOM05D006172 ORTHO05D005515 6.8e-17 94.4 80 65.0
Peaxi162Scf00627g00310 Petunia axillaris HOM05D006172 ORTHO05D005515 4.2e-14 85.1 57 63.2
Cfa027274 Carpinus fangiana HOM05D006172 ORTHO05D005515 1.0e-12 80.5 245 27.8
vmacro04016 Vaccinium macrocarpon HOM05D002367 ORTHO05D426595 1.5e-08 66.6 79 53.2
Os07g0515000 Oryza sativa ssp. japonica HOM05D006172 ORTHO05D005515 5.8e-08 64.7 42 57.1
EL10Ac4g08040 Beta vulgaris HOM05D002586 ORTHO05D007009 1.7e-07 63.2 128 31.2
Peaxi162Scf00000g00783 Petunia axillaris HOM05D002586 ORTHO05D007009 2.2e-07 62.8 128 31.2
unitig_748.g8031 Utricularia gibba HOM05D006700 ORTHO05D008196 2.2e-07 62.8 99 39.4
Actinidia35288 Actinidia chinensis HOM05D002586 ORTHO05D007009 6.4e-07 61.2 228 25.4
HanXRQChr11g0331971 Helianthus annuus HOM05D002586 ORTHO05D007009 6.4e-07 61.2 176 27.8
CsaV3_3G044270 Cucumis sativus L. HOM05D002586 ORTHO05D007009 8.4e-07 60.8 196 27.0
Sc07g0002680 Simmondsia chinensis HOM05D002586 ORTHO05D007009 1.1e-06 60.5 114 32.5
FvH4_3g21210 Fragaria vesca HOM05D002586 ORTHO05D007009 1.4e-06 60.1 192 25.5
FAN11G1488 Fragaria x ananassa HOM05D002586 ORTHO05D007009 1.4e-06 60.1 192 25.5
Nitab4.5_0000092g0280 Nicotiana tabacum HOM05D002586 ORTHO05D007009 1.4e-06 60.1 178 28.7
Oeu001814.1 Olea europaea HOM05D006700 ORTHO05D008196 1.4e-06 60.1 98 37.8
AUR62041166 Chenopodium quinoa HOM05D002586 ORTHO05D007009 3.2e-06 58.9 114 32.5
RcHm_v2.0_Chr5g0036281 Rosa chinensis HOM05D002586 ORTHO05D007009 3.2e-06 58.9 178 26.4
Medtr2g081230 Medicago truncatula HOM05D002586 ORTHO05D007009 4.2e-06 58.5 192 28.1
Nitab4.5_0001386g0040 Nicotiana tabacum HOM05D002586 ORTHO05D007009 4.2e-06 58.5 114 33.3
Oeu031651.2 Olea europaea HOM05D006700 ORTHO05D008196 4.2e-06 58.5 98 37.8
MELO3C018180.2 Cucumis melo HOM05D002586 ORTHO05D007009 5.4e-06 58.2 224 24.1
AagrBONN_evm.TU.Sc2ySwM_228.4718 Anthoceros agrestis HOM05D002586 ORTHO05D007009 7.1e-06 57.8 114 34.2
AUR62029292 Chenopodium quinoa HOM05D002586 ORTHO05D007009 7.1e-06 57.8 114 32.5
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 9.3e-06 57.4 72 48.6


User provided reference genes

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