Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01781 Vaccinium macrocarpon HOM05D000347 ORTHO05D050716 7.2e-42 173.3 78 100.0
Rhsim11G0131900 Rhododendron simsii HOM05D000347 ORTHO05D001997 1.9e-26 122.1 67 83.6
vmacro01787 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 9.4e-26 119.8 67 82.1
vmacro19903 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 3.6e-25 117.9 67 80.6
AUR62009045 Chenopodium quinoa HOM05D000347 ORTHO05D001997 6.1e-25 117.1 67 79.1
AUR62020617 Chenopodium quinoa HOM05D000347 ORTHO05D001997 6.1e-25 117.1 67 79.1
arahy.Tifrunner.gnm1.ann1.YQX6Q2 Arachis hypogaea HOM05D000347 ORTHO05D001997 1.0e-24 116.3 67 79.1
Hma1.2p1_0217F.1_g091890 Hydrangea macrophylla HOM05D000347 ORTHO05D013994 1.4e-24 115.9 67 77.6
Oeu064616.1 Olea europaea HOM05D000347 ORTHO05D001997 1.8e-24 115.5 67 79.1
PSO541G1840 Papaver somniferum HOM05D000347 ORTHO05D001997 1.8e-24 115.5 67 77.6
PSO675G1679 Papaver somniferum HOM05D000347 ORTHO05D001997 1.8e-24 115.5 67 77.6
Zm00001eb218750 Zea mays HOM05D000347 ORTHO05D001997 3.4e-23 111.3 67 74.6
Oeu000196.1 Olea europaea HOM05D000347 ORTHO05D001997 7.5e-23 110.2 67 74.6
BcaB05g22415 Brassica carinata HOM05D000347 ORTHO05D001997 8.3e-22 106.7 67 71.6
Lj9A311G56 Lonicera japonica HOM05D000347 ORTHO05D001997 8.3e-22 106.7 67 74.6
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.6e-20 102.4 67 64.2
Aa31LG11G20 Aethionema arabicum HOM05D000347 ORTHO05D001997 3.5e-20 101.3 67 70.1
Lj9C240G9 Lonicera japonica HOM05D000347 ORTHO05D001997 8.0e-17 90.1 67 65.7
Lsat_1_v5_gn_9_118141 Lactuca sativa HOM05D000347 ORTHO05D001997 6.8e-16 87.0 67 59.7
Peaxi162Scf00011g00030 Petunia axillaris HOM05D000347 ORTHO05D001997 6.8e-16 87.0 49 79.6
ECA236G4836 Erigeron canadensis HOM05D000347 ORTHO05D001997 8.9e-16 86.7 67 58.2
EL10Ac2g03733 Beta vulgaris HOM05D000347 ORTHO05D001997 3.4e-15 84.7 67 62.7
SHI10568 Sapria himalayana HOM05D000347 ORTHO05D001997 1.7e-14 82.4 49 73.5
Cpa.g.sc41.39 Carica papaya HOM05D000347 ORTHO05D001997 6.3e-14 80.5 70 57.1
Lj9C310G3 Lonicera japonica HOM05D000347 ORTHO05D001997 1.4e-13 79.3 96 49.0
Lj9C310G6 Lonicera japonica HOM05D000347 ORTHO05D001997 1.8e-13 79.0 49 71.4
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 2.4e-13 78.6 66 53.0
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 3.2e-13 78.2 67 56.7
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 3.2e-13 78.2 67 56.7
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 1.2e-12 76.3 67 55.2
Sopen01g053630 Solanum pennellii HOM05D000347 ORTHO05D001997 1.2e-12 76.3 67 55.2
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 1.2e-12 76.3 67 55.2
THA.LOC104826753 Tarenaya hassleriana HOM05D000347 ORTHO05D001997 1.2e-12 76.3 67 53.7
CAN.G588.81 Capsicum annuum HOM05D000347 ORTHO05D001997 2.0e-12 75.5 67 55.2
CSS0018898 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 5.9e-12 73.9 67 53.7
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 5.9e-12 73.9 67 53.7
ECA240G3556 Erigeron canadensis HOM05D000347 ORTHO05D001997 7.8e-12 73.6 67 50.7
BcaC03g14110 Brassica carinata HOM05D000347 ORTHO05D001997 2.3e-11 72.0 67 49.3
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.3e-11 72.0 67 49.3
RcHm_v2.0_Chr6g0251791 Rosa chinensis HOM05D000347 ORTHO05D001997 2.3e-11 72.0 67 49.3
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.9e-11 71.6 67 49.3
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.9e-11 71.6 67 49.3
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 3.9e-11 71.2 67 49.3
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 5.0e-11 70.9 67 47.8
SMO276G0027 Selaginella moellendorffii HOM05D000347 ORTHO05D001997 5.0e-11 70.9 66 48.5
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 8.6e-11 70.1 67 47.8
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 8.6e-11 70.1 67 47.8
Migut.B00081 Erythranthe guttata HOM05D000347 ORTHO05D001997 1.5e-10 69.3 66 51.5
MD10G1124300 Malus domestica HOM05D000347 ORTHO05D001997 1.5e-10 69.3 67 49.3
Ca_09709_v3 Cicer arietinum L. HOM05D000347 ORTHO05D001997 1.9e-10 68.9 68 48.5
HanXRQChr01g0021881 Helianthus annuus HOM05D000347 ORTHO05D001997 1.9e-10 68.9 66 43.9
Lj9C312G3 Lonicera japonica HOM05D000347 ORTHO05D001997 2.5e-10 68.6 67 50.7
Lj9C312G10 Lonicera japonica HOM05D000347 ORTHO05D001997 3.3e-10 68.2 67 50.7
Migut.N01033 Erythranthe guttata HOM05D000347 ORTHO05D001997 9.5e-10 66.6 67 50.7
SHI05735 Sapria himalayana HOM05D000347 ORTHO05D001997 2.1e-09 65.5 67 47.8
SMO205G0006 Selaginella moellendorffii HOM05D000347 ORTHO05D001997 2.1e-09 65.5 64 46.9
TWI23G0290 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 6.2e-09 63.9 67 47.8
Ah.11g043720 Amaranthus hybridus HOM05D000347 ORTHO05D001997 1.4e-08 62.8 67 47.8
AT5G58230 Arabidopsis thaliana HOM05D000347 ORTHO05D001997 1.4e-08 62.8 67 47.8
AL8G34330 Arabidopsis lyrata HOM05D000347 ORTHO05D001997 1.8e-08 62.4 67 47.8
CDE03G0403 Ceratophyllum demersum HOM05D000347 ORTHO05D001997 1.8e-08 62.4 67 46.3
CDE06G0438 Ceratophyllum demersum HOM05D000347 ORTHO05D001997 1.8e-08 62.4 67 46.3
THA.LOC104809915 Tarenaya hassleriana HOM05D000347 ORTHO05D001997 1.8e-08 62.4 67 46.3
BcaB01g04481 Brassica carinata HOM05D000347 ORTHO05D001997 6.8e-08 60.5 67 44.8
BcaB01g04548 Brassica carinata HOM05D000347 ORTHO05D001997 6.8e-08 60.5 67 44.8
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 6.8e-08 60.5 67 44.8
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 6.8e-08 60.5 67 44.8
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 6.8e-08 60.5 67 44.8
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 6.8e-08 60.5 67 44.8
Lj9A393T56 Lonicera japonica HOM05D000347 ORTHO05D001997 6.8e-08 60.5 67 44.8
TAR627G0667 Trochodendron aralioides HOM05D000347 ORTHO05D001997 2.6e-07 58.5 67 44.8
Aqoxy1G01573 Aquilegia oxysepala HOM05D000347 ORTHO05D001997 3.4e-07 58.2 67 46.3
Manes.05G060600 Manihot esculenta HOM05D000347 ORTHO05D001997 3.4e-07 58.2 67 46.3
SalBow5G1135 Salvia bowleyana HOM05D000347 ORTHO05D001997 3.4e-07 58.2 67 44.8
vmacro01785 Vaccinium macrocarpon HOM05D000347 ORTHO05D427068 3.4e-07 58.2 26 92.3
Sabra14G0137900 Salix brachista HOM05D000347 ORTHO05D001997 4.4e-07 57.8 31 80.6
Sabra14G0140000 Salix brachista HOM05D000347 ORTHO05D001997 4.4e-07 57.8 31 80.6
SGA_v2.0_scaffold110G31280 Striga asiatica HOM05D000347 ORTHO05D001997 9.8e-07 56.6 67 43.3
unitig_52.g17434 Utricularia gibba HOM05D000347 ORTHO05D001997 9.8e-07 56.6 67 43.3
BraA10t43626Z Brassica rapa HOM05D000347 ORTHO05D001997 1.3e-06 56.2 66 40.9
MELO3C006243.2 Cucumis melo HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
CsaV3_3G010230 Cucumis sativus L. HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
Dinv19349 Davidia involucrata HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
Dinv24259 Davidia involucrata HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
FvH4_7g08380 Fragaria vesca HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
FAN01G2807 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
FAN03G1242 Fragaria x ananassa HOM05D000347 ORTHO05D013994 1.3e-06 56.2 67 44.8
FAN06G2384 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
FAN10G1979 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
Rhsim08G0226500 Rhododendron simsii HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
RcHm_v2.0_Chr1g0340261 Rosa chinensis HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
RcHm_v2.0_Chr4g0393381 Rosa chinensis HOM05D000347 ORTHO05D050716 1.3e-06 56.2 34 70.6
Sc23g0005150 Simmondsia chinensis HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
TWI14G0713 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 1.3e-06 56.2 67 44.8
C02p13490 Brassica napus HOM05D000347 ORTHO05D001997 1.7e-06 55.8 67 40.3
BolC2t07461H Brassica oleracea HOM05D000347 ORTHO05D001997 1.7e-06 55.8 67 40.3
Migut.B00663 Erythranthe guttata HOM05D000347 ORTHO05D001997 2.2e-06 55.5 67 43.3
Atru.chr11.1239 Acer truncatum HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Ciclev10020286m.g Citrus clementina HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Cc02_g22240 Coffea canephora HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
COL.COLO4_19347 Corchorus olitorius HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Duzib128G0635 Durio zibethinus HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Gohir.A13G012000 Gossypium hirsutum HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Gohir.D13G013100 Gossypium hirsutum HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Gorai.013G014000 Gossypium raimondii HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Hma1.2p1_0557F.1_g178310 Hydrangea macrophylla HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Hma1.2p1_2850F.1_g329410 Hydrangea macrophylla HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Manes.11G162700 Manihot esculenta HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Oeu037467.1 Olea europaea HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Psat6g057480 Pisum sativum HOM05D000347 ORTHO05D001997 2.9e-06 55.1 60 35.0
QL04p025124 Quercus lobata HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 2.9e-06 55.1 67 43.3
Actinidia39058 Actinidia chinensis HOM05D000347 ORTHO05D001997 3.7e-06 54.7 67 43.3
arahy.Tifrunner.gnm1.ann1.1WQ6G8 Arachis hypogaea HOM05D000347 ORTHO05D001997 3.7e-06 54.7 67 43.3
Thhalv10013638m.g Eutrema salsugineum HOM05D000347 ORTHO05D001997 3.7e-06 54.7 67 41.8
Oeu039106.1 Olea europaea HOM05D000347 ORTHO05D001997 3.7e-06 54.7 67 43.3
MSTRG.16536 Avicennia marina HOM05D000347 ORTHO05D001997 4.9e-06 54.3 67 41.8
MSTRG.5240 Avicennia marina HOM05D000347 ORTHO05D001997 4.9e-06 54.3 67 43.3
CiPaw.13G019800 Carya illinoinensis HOM05D000347 ORTHO05D001997 4.9e-06 54.3 67 43.3
CBR_g24066 Chara braunii HOM05D000347 ORTHO05D001997 4.9e-06 54.3 67 40.3
Lsat_1_v5_gn_7_77940 Lactuca sativa HOM05D000347 ORTHO05D001997 6.4e-06 53.9 67 41.8
Nitab4.5_0004005g0020 Nicotiana tabacum HOM05D000347 ORTHO05D001997 6.4e-06 53.9 67 43.3
Nitab4.5_0005539g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 6.4e-06 53.9 67 43.3
Solyc01g104510.3 Solanum lycopersicum HOM05D000347 ORTHO05D001997 6.4e-06 53.9 67 43.3
PGSC0003DMG400023743 Solanum tuberosum HOM05D000347 ORTHO05D001997 6.4e-06 53.9 67 43.3
BcaB01g04544 Brassica carinata HOM05D000347 ORTHO05D001997 8.3e-06 53.5 36 66.7
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 8.3e-06 53.5 66 39.4
Duzib106G1861 Durio zibethinus HOM05D000347 ORTHO05D001997 8.3e-06 53.5 67 41.8
Sp6g19890 Schrenkiella parvula HOM05D000347 ORTHO05D001997 8.3e-06 53.5 67 40.3
Sed0020879 Sechium edule HOM05D000347 ORTHO05D001997 8.3e-06 53.5 67 41.8
SGA_v2.0_scaffold145G36065 Striga asiatica HOM05D000347 ORTHO05D001997 8.3e-06 53.5 67 43.3


User provided reference genes

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