Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 8.6e-165 583.6 289 100.0
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.8e-83 312.0 229 74.2
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 5.3e-82 308.5 229 73.4
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.5e-81 307.0 236 72.0
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 1.1e-76 290.8 228 70.2
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 1.3e-75 287.3 229 70.3
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.5e-71 273.1 229 66.8
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.8e-69 266.9 225 66.7
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 5.2e-69 265.4 228 65.4
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 6.7e-69 265.0 228 64.5
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 6.7e-69 265.0 229 64.6
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 1.5e-68 263.8 229 64.2
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 4.4e-68 262.3 229 63.8
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 9.7e-68 261.2 230 63.5
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 3.7e-67 259.2 228 63.2
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 3.7e-67 259.2 228 64.9
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 2.4e-66 256.5 228 62.3
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 5.3e-66 255.4 186 73.1
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 9.1e-66 254.6 227 64.3
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 1.2e-65 254.2 233 61.8
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.5e-65 252.3 249 59.8
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 7.7e-65 251.5 249 59.4
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 1.0e-64 251.1 228 61.0
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 1.7e-64 250.4 237 59.1
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.2e-64 250.0 228 62.7
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 2.9e-64 249.6 249 59.4
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 8.5e-64 248.1 234 61.1
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 1.1e-63 247.7 196 67.3
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 1.5e-63 247.3 225 64.4
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 2.5e-63 246.5 197 67.5
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 3.2e-63 246.1 235 60.4
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 7.2e-63 245.0 243 57.6
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 9.4e-63 244.6 239 58.2
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.6e-62 243.8 239 56.9
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 1.6e-62 243.8 233 60.9
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.7e-62 243.0 228 61.8
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 3.6e-62 242.7 233 61.4
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 6.1e-62 241.9 238 57.1
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 4.0e-61 239.2 210 62.9
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 5.2e-61 238.8 231 61.5
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 5.2e-61 238.8 233 60.1
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 6.8e-61 238.4 233 59.7
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 1.2e-60 237.7 226 59.7
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 1.5e-60 237.3 233 59.7
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 2.0e-60 236.9 195 64.6
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 4.4e-60 235.7 232 59.9
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 5.7e-60 235.3 232 59.5
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 9.7e-60 234.6 232 59.1
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 1.7e-59 233.8 232 59.5
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.7e-59 233.8 232 58.2
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 2.2e-59 233.4 240 57.5
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 3.1e-58 229.6 233 57.1
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 9.1e-58 228.0 232 58.6
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 9.1e-58 228.0 236 57.6
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 1.2e-57 227.6 232 58.6
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.0e-57 226.9 192 64.6
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 3.5e-57 226.1 229 58.1
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 4.5e-57 225.7 194 64.4
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.3e-56 224.2 238 55.5
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.3e-56 224.2 235 55.7
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 1.3e-56 224.2 232 57.8
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 2.2e-56 223.4 238 55.9
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 6.5e-56 221.9 234 57.3
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 8.5e-56 221.5 238 55.5
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 1.1e-55 221.1 235 55.3
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 4.2e-55 219.2 232 56.9
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 5.5e-55 218.8 234 55.6
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 9.4e-55 218.0 236 54.7
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 9.4e-55 218.0 235 54.0
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 9.4e-55 218.0 232 55.6
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 9.4e-55 218.0 232 56.0
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 1.2e-54 217.6 236 54.7
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 3.6e-54 216.1 233 54.9
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 4.7e-54 215.7 246 53.7
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 8.0e-54 214.9 195 60.0
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.4e-53 214.2 232 54.3
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 1.4e-53 214.2 235 54.9
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 1.4e-53 214.2 235 55.7
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 1.4e-53 214.2 197 61.9
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 2.3e-53 213.4 235 54.9
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 3.0e-53 213.0 235 54.5
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 5.2e-53 212.2 236 54.7
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 8.8e-53 211.5 235 54.9
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 8.8e-53 211.5 233 54.9
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 1.2e-52 211.1 237 53.6
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 1.5e-52 210.7 196 58.2
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 1.5e-52 210.7 196 58.2
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 7.5e-52 208.4 259 51.0
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 9.8e-52 208.0 253 52.6
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 9.8e-52 208.0 253 52.6
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 2.8e-51 206.5 197 59.9
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 2.8e-51 206.5 235 54.0
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 6.3e-51 205.3 235 54.0
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 1.4e-50 204.1 197 58.9
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 7.0e-50 201.8 269 49.4
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.6e-49 200.7 228 50.4
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 3.5e-49 199.5 196 55.6
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 1.3e-48 197.6 244 51.6
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 3.8e-48 196.1 235 49.8
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 6.8e-45 185.3 140 70.0
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 1.3e-43 181.0 175 60.6
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 4.9e-43 179.1 239 46.4
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 6.3e-43 178.7 212 48.1
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.1e-42 177.9 139 67.6
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 5.9e-41 172.2 200 50.5
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 5.9e-41 172.2 198 48.5
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.7e-40 170.6 355 39.2
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 1.1e-39 167.9 285 42.1
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 3.3e-39 166.4 231 47.6
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 1.8e-37 160.6 174 55.7
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 3.1e-37 159.8 210 48.1
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.0e-32 144.8 108 69.4
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 5.6e-31 139.0 162 53.7
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 7.3e-31 138.7 198 47.0
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 2.1e-30 137.1 240 38.8
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 3.7e-27 126.3 86 74.4
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.9e-27 125.9 84 77.4
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 1.3e-24 117.9 86 74.4
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 5.1e-24 115.9 99 63.6
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 8.6e-24 115.2 81 74.1
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.5e-23 114.4 123 50.4
vmacro00611 Vaccinium macrocarpon HOM05D000031 ORTHO05D000030 2.5e-23 113.6 82 64.6
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 3.3e-23 113.2 135 48.1
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 2.8e-22 110.2 87 63.2
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.7e-19 100.9 110 49.1
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 4.1e-18 96.3 86 61.6
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 3.6e-14 83.2 70 65.7
vmacro16406 Vaccinium macrocarpon HOM05D001545 ORTHO05D001600 2.4e-13 80.5 82 52.4
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 1.5e-12 77.8 93 53.8
vmacro19518 Vaccinium macrocarpon HOM05D003071 ORTHO05D003641 3.4e-12 76.6 41 80.5
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 7.6e-12 75.5 116 37.9
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 7.6e-12 75.5 193 31.1
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 7.1e-10 68.9 46 71.7
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 3.3e-07 60.1 100 43.0
SalBow3G3353 Salvia bowleyana HOM05D005614 ORTHO05D006759 7.3e-07 58.9 66 51.5


User provided reference genes

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