Gene: AT1G18340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G18340
  • Transcript Identifier AT1G18340.1
  • Gene Type Coding gene
  • Location Chr1 : 6311612-6313734 : negative

Gene Family Information

  • ID HOM05D005614
  • #Genes/#Species 137/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G18340.1
  • uniprot Q8LF41

Descriptions

  • Description basal transcription factor complex subunit-like protein
  • Computational description basal transcription factor complex subunit-related; FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: core TFIIH complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600); Has 359 Blast hits to 354 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 143; Plants - 47; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IBA
Gene Ontologynucleotide-excision repair1
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0070816
IBA
Gene Ontologyphosphorylation of RNA polymerase II C-terminal domain1
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000439
IEA
GOA Databasetranscription factor TFIIH core complex
GO:0000439
IBA
Gene Ontologytranscription factor TFIIH core complex1
GO:0000439
IEA
InterProtranscription factor TFIIH core complex
GO:0005675
IBA
Gene Ontologytranscription factor TFIIH holo complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004600 TFIIH subunit Tfb4/GTF2H3
IPR036465 von Willebrand factor A-like domain superfamily
Mapman id Description
14.6.3.2.6 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit TFB4
15.3.3.5.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB4