Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1884.0 979 100.0
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1602.4 1162 75.7
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1534.6 990 81.4
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1370.1 988 73.9
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1368.6 980 74.8
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1363.2 980 73.6
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1361.7 980 73.5
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1350.5 980 73.1
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1346.6 980 73.2
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1345.5 979 72.8
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1345.5 980 72.9
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1345.1 1003 72.8
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1337.8 996 71.3
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1336.6 980 73.0
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1312.4 983 71.5
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1304.7 995 71.1
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1303.1 828 82.1
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1301.6 985 71.9
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1300.4 994 71.7
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1295.8 983 71.1
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1294.3 993 70.1
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1292.7 997 70.6
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1291.9 1020 68.8
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1290.8 993 69.2
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1290.4 986 70.1
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1289.6 999 69.8
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1289.2 986 70.1
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1285.4 992 70.0
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1281.9 1047 67.3
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1280.4 1050 66.9
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1279.6 1007 69.5
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1279.6 994 69.3
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1278.8 1038 66.6
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1277.3 982 70.6
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1276.9 984 70.3
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1276.9 984 70.3
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1276.5 991 69.0
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1275.4 1033 67.4
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1273.5 845 78.6
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1272.7 1021 67.5
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1270.4 1006 69.0
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1267.7 994 69.4
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1266.9 1031 68.0
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1265.0 997 69.2
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1263.4 997 69.7
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1263.4 1037 67.1
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1261.5 1000 68.5
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1258.8 1070 65.6
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1253.4 1050 66.4
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1245.0 985 68.2
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1244.6 1048 66.6
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1241.5 989 67.8
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1241.1 998 67.7
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1239.6 1048 66.3
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1233.4 981 67.4
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 988 67.4
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1228.0 1043 66.0
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1223.0 993 67.2
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1218.8 1044 65.7
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1218.4 984 67.0
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1214.5 987 67.2
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 985 67.4
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1204.9 995 65.2
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1201.8 986 66.5
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1201.0 985 66.2
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1201.0 985 66.2
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1199.9 985 66.2
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1195.6 986 66.1
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1194.1 984 65.9
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 985 65.3
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 985 65.8
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1188.3 987 65.9
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 983 66.0
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1186.4 980 65.5
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1182.9 985 65.6
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1181.8 985 65.0
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1181.8 983 65.6
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1178.3 987 65.9
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1175.2 985 65.8
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1172.1 985 64.5
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1162.1 994 61.0
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1149.4 990 64.5
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1130.5 994 63.0
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1123.2 1008 60.2
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1099.3 914 65.8
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1099.0 1007 60.2
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1086.2 824 70.3
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 0.0e+00 1080.1 986 62.0
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 1.1e-301 1040.0 887 65.3
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 3.1e-291 1005.4 979 60.0
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 3.5e-271 938.7 995 55.5
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.3e-267 924.9 1010 52.4
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 3.8e-265 918.7 1070 49.3
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 3.9e-262 908.7 769 65.9
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 8.8e-254 880.9 1065 48.4
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 3.3e-253 879.0 1002 51.1
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.5e-237 827.0 722 63.9
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 5.0e-225 785.4 810 57.9
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.2e-215 754.2 604 69.0
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 8.0e-215 751.5 609 67.2
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 1.4e-211 740.7 944 48.8
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.8e-198 697.2 550 69.3
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 3.1e-182 643.3 646 56.5
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 3.4e-173 613.2 558 60.8
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 7.9e-154 548.9 987 35.2
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 4.1e-134 483.4 395 64.3
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 2.0e-133 481.1 367 65.7
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-122 444.9 305 70.8
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 6.1e-122 443.0 999 32.1
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 6.8e-121 439.5 285 79.3
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.2e-117 428.7 277 80.1
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 5.0e-116 423.3 278 77.7
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.2e-111 407.9 366 59.0
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 7.0e-110 402.9 296 70.9
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 3.8e-108 397.1 1332 28.0
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 4.7e-106 390.2 968 31.4
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 8.3e-103 379.4 359 57.7
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.8e-89 335.1 286 59.1
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 3.2e-86 324.3 830 31.1
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 3.0e-76 291.2 175 80.0
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-72 278.5 244 61.5
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 7.6e-72 276.6 226 66.4
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.8e-71 274.2 202 67.8
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 9.0e-65 253.1 145 89.7
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 2.9e-55 221.5 225 55.6
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.9e-55 220.7 144 75.0
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 1.1e-54 219.5 150 74.0
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.1e-54 219.5 185 63.8
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.6e-53 214.2 203 58.6
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-46 193.0 129 72.9
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.6e-45 187.6 131 70.2
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 6.0e-45 187.2 105 89.5
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 7.9e-45 186.8 214 54.2
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.1e-44 184.1 129 69.8
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 4.8e-42 177.6 174 55.2
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 3.1e-41 174.9 98 87.8
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 3.9e-36 157.9 122 69.7
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.1e-36 157.5 109 69.7
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 2.7e-29 135.2 207 46.9
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.7e-27 127.5 85 70.6
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 8.5e-23 113.6 85 60.0
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 6.1e-21 107.5 139 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.7e-18 99.4 169 36.7
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 7.2e-14 84.0 42 90.5
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 5.3e-09 67.8 80 55.0
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 6.5e-07 60.8 59 52.5


User provided reference genes

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