Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '349', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p20250' => 'bna', 'A04p14190' => 'bna', 'A08p12850' => 'bna', 'Aa31LG2G13180' => 'aar', 'Aa31LG9G15130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5648' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.575' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3532' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.221' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2631' => 'aag', 'Actinidia02198' => 'ach', 'Actinidia02199' => 'ach', 'Actinidia25913' => 'ach', 'Ah.07g199260' => 'amhyb', 'Ah.07g199270' => 'amhyb', 'Ah.12g053960' => 'amhyb', 'AL7G37640' => 'aly', 'AL7G48280' => 'aly', 'AL7G48350' => 'aly', 'Aqoxy7G00853' => 'aox', 'Aqoxy7G00854' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W2FB9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V75MI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JK48S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9CQCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CW5K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW9JRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RES91D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2ZF2' => 'arhy', 'AT4G17070' => 'ath', 'AT5G41150' => 'ath', 'ATR0107G001' => 'atr', 'ATR0665G190' => 'atr', 'ATR0665G232' => 'atr', 'Atru.chr5.99' => 'acertr', 'Atru.chr9.1199' => 'acertr', 'Atru.chr9.1200' => 'acertr', 'Atru.chr9.1201' => 'acertr', 'Atru.chr9.1202' => 'acertr', 'Atru.chr9.1203' => 'acertr', 'AUR62007171' => 'cqu', 'AUR62007172' => 'cqu', 'AUR62018832' => 'cqu', 'AUR62018833' => 'cqu', 'BcaB04g18384' => 'bca', 'BcaB04g18387' => 'bca', 'BcaB06g27602' => 'bca', 'BcaC02g08980' => 'bca', 'BcaC07g38035' => 'bca', 'BcaNung00127' => 'bca', 'BolC1t02490H' => 'bol', 'BolC4t26415H' => 'bol', 'BolC8t48429H' => 'bol', 'BraA04t17079Z' => 'bra', 'BraA08t33269Z' => 'bra', 'C01p25390' => 'bna', 'C04p48230' => 'bna', 'CAN.G572.14' => 'can', 'CAN.G572.15' => 'can', 'CANSAT21G1847' => 'cansat', 'CANSAT21G2194' => 'cansat', 'CANSAT25G0255' => 'cansat', 'CARHR213220' => 'chi', 'CARHR223650' => 'chi', 'Carub.0007s2433' => 'cru', 'Carub.0007s3432' => 'cru', 'Ca_08045_v3' => 'car', 'Ca_24613_v3' => 'car', 'Ca_24615_v3' => 'car', 'CBR_g39228' => 'cbr', 'CBR_g470' => 'cbr', 'CBR_g69645' => 'cbr', 'Cc08_g11220' => 'ccan', 'Cc08_g11250' => 'ccan', 'CDE02G0676' => 'cde', 'CDE04G2668' => 'cde', 'CDE12G0256' => 'cde', 'Cfa012332' => 'cfa', 'Cfa026920' => 'cfa', 'Ciclev10023925m.g' => 'ccl', 'Ciclev10024418m.g' => 'ccl', 'CiPaw.11G072100' => 'cil', 'CiPaw.12G056000' => 'cil', 'CiPaw.14G018400' => 'cil', 'ClCG05G003040' => 'cla', 'ClCG09G012670' => 'cla', 'ClCG10G002160' => 'cla', 'COL.COLO4_00166' => 'col', 'COL.COLO4_06683' => 'col', 'COL.COLO4_06684' => 'col', 'COL.COLO4_12375' => 'col', 'Cpa.g.c28699.1' => 'cpa', 'Cpa.g.sc98.61' => 'cpa', 'Cpa.g.sc98.64' => 'cpa', 'Cpa.g.sc98.72' => 'cpa', 'Cre02.g080850' => 'cre', 'Cre06.g307800' => 'cre', 'Cre06.g311400' => 'cre', 'Cre13.g603950' => 'cre', 'Cre14.g628450' => 'cre', 'CsaV3_3G002250' => 'csa', 'CsaV3_3G010660' => 'csa', 'CsaV3_3G049790' => 'csa', 'CSS0023599' => 'camsi', 'CSS0038249' => 'camsi', 'DCAR_000656' => 'dca', 'DCAR_029498' => 'dca', 'DCAR_029501' => 'dca', 'DCAR_029503' => 'dca', 'DCAR_032182' => 'dca', 'Dinv07465' => 'din', 'Dinv25138' => 'din', 'Dinv25139' => 'din', 'Dinv28880' => 'din', 'Dinv39794' => 'din', 'Dinv40944' => 'din', 'Dinv43603' => 'din', 'Duzib084G0537' => 'dzi', 'Duzib138G1052' => 'dzi', 'Duzib205G1274' => 'dzi', 'Duzib205G1673' => 'dzi', 'ECA246G2103' => 'eca', 'ECA246G3991' => 'eca', 'EL10Ac5g12260' => 'bvu', 'Eucgr.E00348' => 'egr', 'Eucgr.E00349' => 'egr', 'FAN03G2304' => 'fan', 'FAN06G2496' => 'fan', 'FAN08G2877' => 'fan', 'FAN10G4135' => 'fan', 'FAN13G0006' => 'fan', 'FAN13G0539' => 'fan', 'FAN18G1605' => 'fan', 'FAN18G2460' => 'fan', 'FvH4_5g20470' => 'fve', 'FvH4_5g20480' => 'fve', 'FvH4_7g09211' => 'fve', 'Glyma.01G204300' => 'gma', 'Glyma.01G204467' => 'gma', 'Glyma.01G204533' => 'gma', 'Glyma.09G245200' => 'gma', 'Glyma.11G038500' => 'gma', 'Glyma.11G038700' => 'gma', 'Glyma.17G148700' => 'gma', 'Glyma.18G248100' => 'gma', 'Gohir.A08G162600' => 'ghi', 'Gohir.A08G162700' => 'ghi', 'Gohir.A09G197200' => 'ghi', 'Gohir.A11G074800' => 'ghi', 'Gohir.D08G182600' => 'ghi', 'Gohir.D08G182700' => 'ghi', 'Gohir.D09G191800' => 'ghi', 'Gohir.D11G079500' => 'ghi', 'Gorai.004G191600' => 'gra', 'Gorai.004G191700' => 'gra', 'Gorai.006G214600' => 'gra', 'Gorai.007G085200' => 'gra', 'GSVIVG01002050001' => 'vvi', 'GSVIVG01002051001' => 'vvi', 'GSVIVG01002647001' => 'vvi', 'GSVIVG01003790001' => 'vvi', 'GSVIVG01004825001' => 'vvi', 'GSVIVG01004826001' => 'vvi', 'GSVIVG01018309001' => 'vvi', 'HanXRQChr01g0015991' => 'han', 'HanXRQChr01g0016001' => 'han', 'HanXRQChr17g0535581' => 'han', 'Haze_08360' => 'cav', 'Hma1.2p1_0840F.1_g226690' => 'hma', 'Hma1.2p1_3159F.1_g333390' => 'hma', 'Hma1.2p1_3159F.1_g333400' => 'hma', 'Hma1.2p1_3159F.1_g333410' => 'hma', 'HPP92_000025' => 'vpl', 'HPP92_000026' => 'vpl', 'HPP92_001389' => 'vpl', 'HPP92_002782' => 'vpl', 'HPP92_012638' => 'vpl', 'HPP92_013056' => 'vpl', 'HPP92_025743' => 'vpl', 'HPP92_027917' => 'vpl', 'HPP92_028027' => 'vpl', 'HPP92_028028' => 'vpl', 'HPP92_028029' => 'vpl', 'HPP92_028226' => 'vpl', 'Hund11502' => 'sun', 'Hund14476' => 'sun', 'Hund14477' => 'sun', 'Lalb_Chr01g0021681' => 'lal', 'Lalb_Chr05g0214201' => 'lal', 'Lalb_Chr09g0324121' => 'lal', 'Lalb_Chr09g0324141' => 'lal', 'Lalb_Chr19g0126401' => 'lal', 'Lalb_Chr19g0126411' => 'lal', 'Lj1g0018104' => 'lja', 'Lj2g0000600' => 'lja', 'Lj2g0012346' => 'lja', 'Lj8A278T25' => 'lonja', 'Lj8C277T15' => 'lonja', 'Lj9A553T47' => 'lonja', 'Lsat_1_v5_gn_3_15381' => 'lsa', 'Lsat_1_v5_gn_3_15401' => 'lsa', 'Manes.01G089700' => 'mes', 'Manes.01G089800' => 'mes', 'Manes.01G273400' => 'mes', 'Mapoly0007s0092' => 'mpo', 'Mapoly0022s0130' => 'mpo', 'Mapoly0034s0116' => 'mpo', 'MBI04_g36289_MAGBIO' => 'mbi', 'MBI04_g38561_MAGBIO' => 'mbi', 'MBI04_g38562_MAGBIO' => 'mbi', 'MCO15G261' => 'mco', 'MCO16G346' => 'mco', 'MD04G1054800' => 'mdo', 'MD06G1046500' => 'mdo', 'MD06G1046600' => 'mdo', 'MD07G1096900' => 'mdo', 'MD07G1097200' => 'mdo', 'Medtr5g013480' => 'mtr', 'Medtr5g013540' => 'mtr', 'Medtr7g081200' => 'mtr', 'MELO3C003338.2' => 'cme', 'MELO3C006285.2' => 'cme', 'MELO3C013896.2' => 'cme', 'Migut.E01262' => 'egut', 'Migut.E01632' => 'egut', 'Migut.F01957' => 'egut', 'MSTRG.13777' => 'ama', 'MSTRG.27485' => 'ama', 'MSTRG.9151' => 'ama', 'Nitab4.5_0003335g0030' => 'nta', 'Nitab4.5_0003335g0040' => 'nta', 'Nitab4.5_0004227g0020' => 'nta', 'Nitab4.5_0004227g0030' => 'nta', 'Nn1g00743' => 'nnu', 'Nn1g00744' => 'nnu', 'Nn6g33751' => 'nnu', 'Oeu017206.1' => 'oeu', 'Oeu028057.3' => 'oeu', 'Oeu040671.1' => 'oeu', 'Oeu062966.1' => 'oeu', 'Os03g0100300' => 'osa', 'Os03g0100400' => 'osa', 'Peaxi162Scf00301g00615' => 'pax', 'Peaxi162Scf00301g00621' => 'pax', 'PGR031G0104' => 'pgr', 'PGR042G1059' => 'pgr', 'PGR042G3895' => 'pgr', 'PGSC0003DMG400026213' => 'stu', 'PGSC0003DMG400026214' => 'stu', 'Phvul.002G001900' => 'pvu', 'Phvul.002G002100' => 'pvu', 'Phvul.008G049200' => 'pvu', 'Potri.001G150300' => 'ptr', 'Potri.001G150400' => 'ptr', 'Potri.002G139600' => 'ptr', 'Potri.003G083900' => 'ptr', 'Potri.014G051300' => 'ptr', 'Pp3c15_10740' => 'ppa', 'Pp3c15_21470' => 'ppa', 'Pp3c18_11670' => 'ppa', 'Pp3c9_3160' => 'ppa', 'PRCOL_00000830' => 'pco', 'PRCOL_00002244' => 'pco', 'PRCOL_00002881' => 'pco', 'Prupe.2G121100' => 'ppe', 'Prupe.5G054800' => 'ppe', 'Prupe.5G054900' => 'ppe', 'Psat0s3354g0040' => 'psa', 'Psat2g175640' => 'psa', 'Psat2g175720' => 'psa', 'Psat3g099640' => 'psa', 'Psat4g192040' => 'psa', 'Psat5g084960' => 'psa', 'Psat5g140400' => 'psa', 'Psat7g123840' => 'psa', 'PSO063G1476' => 'pso', 'PSO675G3297' => 'pso', 'QL04p028582' => 'qlo', 'QL04p028706' => 'qlo', 'QL12p008613' => 'qlo', 'QL12p008620' => 'qlo', 'RcHm_v2.0_Chr1g0345271' => 'rch', 'RcHm_v2.0_Chr4g0410431' => 'rch', 'RcHm_v2.0_Chr7g0205791' => 'rch', 'RcHm_v2.0_Chr7g0205801' => 'rch', 'Rhsim07G0136100' => 'rsi', 'Rhsim11G0061800' => 'rsi', 'Rhsim11G0063300' => 'rsi', 'Sabra01G0120100' => 'sbr', 'Sabra01G0120200' => 'sbr', 'Sabra02G0108700' => 'sbr', 'Sabra14G0036400' => 'sbr', 'Sabra14G0038500' => 'sbr', 'SalBow1G0188' => 'sbo', 'SalBow1G4075' => 'sbo', 'SalBow4G3207' => 'sbo', 'Sc01g0007950' => 'sci', 'Sc01g0007960' => 'sci', 'Sed0012793' => 'sed', 'Sed0013079' => 'sed', 'Sed0019172' => 'sed', 'Sed0021992' => 'sed', 'Sed0023004' => 'sed', 'Sed0025805' => 'sed', 'SEGI_01687' => 'sgi', 'SEGI_02234' => 'sgi', 'SEGI_05481' => 'sgi', 'SEGI_20203' => 'sgi', 'SGA_v2.0_scaffold13G06381' => 'sas', 'SGA_v2.0_scaffold6G03161' => 'sas', 'SHI07797' => 'shi', 'SHI07802' => 'shi', 'SMO118G0017' => 'smo', 'SMO141G0008' => 'smo', 'Solyc08g077790.3' => 'sly', 'Solyc08g077800.4' => 'sly', 'Sopen08g026300' => 'spe', 'Sopen08g026310' => 'spe', 'Sp7g00750' => 'spa', 'Sp7g17110' => 'spa', 'SpUn0010_0230' => 'spa', 'TAR636G0264' => 'tar', 'TAR636G2628' => 'tar', 'THA.LOC104807928' => 'tha', 'THA.LOC104812738' => 'tha', 'Thecc.01G400200' => 'tca', 'Thecc.03G239200' => 'tca', 'Thecc.03G239300' => 'tca', 'Thhalv10025645m.g' => 'esa', 'Thhalv10027633m.g' => 'esa', 'TPR.G1517' => 'tpr', 'TPR.G25980' => 'tpr', 'TPR.G31429' => 'tpr', 'TPR.G31432' => 'tpr', 'TPR.G31434' => 'tpr', 'TWI15G0766' => 'twi', 'TWI59G0877' => 'twi', 'TWI81G0509' => 'twi', 'unitig_46.g18602' => 'ugi', 'unitig_699.g19770' => 'ugi', 'vmacro00746' => 'vma', 'vmacro00747' => 'vma', 'VMungo1215G0420' => 'vmu', 'VMungo1215G1416' => 'vmu', 'VMungo1383G1774' => 'vmu', 'Zm00001eb208390' => 'zma', 'Zm00001eb404550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001887', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001887' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '349', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001887' ) ), 'genes' => array( 'A01p20250' => 'bna', 'A04p14190' => 'bna', 'A08p12850' => 'bna', 'Aa31LG2G13180' => 'aar', 'Aa31LG9G15130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5648' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.575' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3532' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.221' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2631' => 'aag', 'Actinidia02198' => 'ach', 'Actinidia02199' => 'ach', 'Actinidia25913' => 'ach', 'Ah.07g199260' => 'amhyb', 'Ah.07g199270' => 'amhyb', 'Ah.12g053960' => 'amhyb', 'AL7G37640' => 'aly', 'AL7G48280' => 'aly', 'AL7G48350' => 'aly', 'Aqoxy7G00853' => 'aox', 'Aqoxy7G00854' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W2FB9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V75MI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JK48S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9CQCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CW5K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW9JRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RES91D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2ZF2' => 'arhy', 'AT4G17070' => 'ath', 'AT5G41150' => 'ath', 'ATR0107G001' => 'atr', 'ATR0665G190' => 'atr', 'ATR0665G232' => 'atr', 'Atru.chr5.99' => 'acertr', 'Atru.chr9.1199' => 'acertr', 'Atru.chr9.1200' => 'acertr', 'Atru.chr9.1201' => 'acertr', 'Atru.chr9.1202' => 'acertr', 'Atru.chr9.1203' => 'acertr', 'AUR62007171' => 'cqu', 'AUR62007172' => 'cqu', 'AUR62018832' => 'cqu', 'AUR62018833' => 'cqu', 'BcaB04g18384' => 'bca', 'BcaB04g18387' => 'bca', 'BcaB06g27602' => 'bca', 'BcaC02g08980' => 'bca', 'BcaC07g38035' => 'bca', 'BcaNung00127' => 'bca', 'BolC1t02490H' => 'bol', 'BolC4t26415H' => 'bol', 'BolC8t48429H' => 'bol', 'BraA04t17079Z' => 'bra', 'BraA08t33269Z' => 'bra', 'C01p25390' => 'bna', 'C04p48230' => 'bna', 'CAN.G572.14' => 'can', 'CAN.G572.15' => 'can', 'CANSAT21G1847' => 'cansat', 'CANSAT21G2194' => 'cansat', 'CANSAT25G0255' => 'cansat', 'CARHR213220' => 'chi', 'CARHR223650' => 'chi', 'Carub.0007s2433' => 'cru', 'Carub.0007s3432' => 'cru', 'Ca_08045_v3' => 'car', 'Ca_24613_v3' => 'car', 'Ca_24615_v3' => 'car', 'CBR_g39228' => 'cbr', 'CBR_g470' => 'cbr', 'CBR_g69645' => 'cbr', 'Cc08_g11220' => 'ccan', 'Cc08_g11250' => 'ccan', 'CDE02G0676' => 'cde', 'CDE04G2668' => 'cde', 'CDE12G0256' => 'cde', 'Cfa012332' => 'cfa', 'Cfa026920' => 'cfa', 'Ciclev10023925m.g' => 'ccl', 'Ciclev10024418m.g' => 'ccl', 'CiPaw.11G072100' => 'cil', 'CiPaw.12G056000' => 'cil', 'CiPaw.14G018400' => 'cil', 'ClCG05G003040' => 'cla', 'ClCG09G012670' => 'cla', 'ClCG10G002160' => 'cla', 'COL.COLO4_00166' => 'col', 'COL.COLO4_06683' => 'col', 'COL.COLO4_06684' => 'col', 'COL.COLO4_12375' => 'col', 'Cpa.g.c28699.1' => 'cpa', 'Cpa.g.sc98.61' => 'cpa', 'Cpa.g.sc98.64' => 'cpa', 'Cpa.g.sc98.72' => 'cpa', 'Cre02.g080850' => 'cre', 'Cre06.g307800' => 'cre', 'Cre06.g311400' => 'cre', 'Cre13.g603950' => 'cre', 'Cre14.g628450' => 'cre', 'CsaV3_3G002250' => 'csa', 'CsaV3_3G010660' => 'csa', 'CsaV3_3G049790' => 'csa', 'CSS0023599' => 'camsi', 'CSS0038249' => 'camsi', 'DCAR_000656' => 'dca', 'DCAR_029498' => 'dca', 'DCAR_029501' => 'dca', 'DCAR_029503' => 'dca', 'DCAR_032182' => 'dca', 'Dinv07465' => 'din', 'Dinv25138' => 'din', 'Dinv25139' => 'din', 'Dinv28880' => 'din', 'Dinv39794' => 'din', 'Dinv40944' => 'din', 'Dinv43603' => 'din', 'Duzib084G0537' => 'dzi', 'Duzib138G1052' => 'dzi', 'Duzib205G1274' => 'dzi', 'Duzib205G1673' => 'dzi', 'ECA246G2103' => 'eca', 'ECA246G3991' => 'eca', 'EL10Ac5g12260' => 'bvu', 'Eucgr.E00348' => 'egr', 'Eucgr.E00349' => 'egr', 'FAN03G2304' => 'fan', 'FAN06G2496' => 'fan', 'FAN08G2877' => 'fan', 'FAN10G4135' => 'fan', 'FAN13G0006' => 'fan', 'FAN13G0539' => 'fan', 'FAN18G1605' => 'fan', 'FAN18G2460' => 'fan', 'FvH4_5g20470' => 'fve', 'FvH4_5g20480' => 'fve', 'FvH4_7g09211' => 'fve', 'Glyma.01G204300' => 'gma', 'Glyma.01G204467' => 'gma', 'Glyma.01G204533' => 'gma', 'Glyma.09G245200' => 'gma', 'Glyma.11G038500' => 'gma', 'Glyma.11G038700' => 'gma', 'Glyma.17G148700' => 'gma', 'Glyma.18G248100' => 'gma', 'Gohir.A08G162600' => 'ghi', 'Gohir.A08G162700' => 'ghi', 'Gohir.A09G197200' => 'ghi', 'Gohir.A11G074800' => 'ghi', 'Gohir.D08G182600' => 'ghi', 'Gohir.D08G182700' => 'ghi', 'Gohir.D09G191800' => 'ghi', 'Gohir.D11G079500' => 'ghi', 'Gorai.004G191600' => 'gra', 'Gorai.004G191700' => 'gra', 'Gorai.006G214600' => 'gra', 'Gorai.007G085200' => 'gra', 'GSVIVG01002050001' => 'vvi', 'GSVIVG01002051001' => 'vvi', 'GSVIVG01002647001' => 'vvi', 'GSVIVG01003790001' => 'vvi', 'GSVIVG01004825001' => 'vvi', 'GSVIVG01004826001' => 'vvi', 'GSVIVG01018309001' => 'vvi', 'HanXRQChr01g0015991' => 'han', 'HanXRQChr01g0016001' => 'han', 'HanXRQChr17g0535581' => 'han', 'Haze_08360' => 'cav', 'Hma1.2p1_0840F.1_g226690' => 'hma', 'Hma1.2p1_3159F.1_g333390' => 'hma', 'Hma1.2p1_3159F.1_g333400' => 'hma', 'Hma1.2p1_3159F.1_g333410' => 'hma', 'HPP92_000025' => 'vpl', 'HPP92_000026' => 'vpl', 'HPP92_001389' => 'vpl', 'HPP92_002782' => 'vpl', 'HPP92_012638' => 'vpl', 'HPP92_013056' => 'vpl', 'HPP92_025743' => 'vpl', 'HPP92_027917' => 'vpl', 'HPP92_028027' => 'vpl', 'HPP92_028028' => 'vpl', 'HPP92_028029' => 'vpl', 'HPP92_028226' => 'vpl', 'Hund11502' => 'sun', 'Hund14476' => 'sun', 'Hund14477' => 'sun', 'Lalb_Chr01g0021681' => 'lal', 'Lalb_Chr05g0214201' => 'lal', 'Lalb_Chr09g0324121' => 'lal', 'Lalb_Chr09g0324141' => 'lal', 'Lalb_Chr19g0126401' => 'lal', 'Lalb_Chr19g0126411' => 'lal', 'Lj1g0018104' => 'lja', 'Lj2g0000600' => 'lja', 'Lj2g0012346' => 'lja', 'Lj8A278T25' => 'lonja', 'Lj8C277T15' => 'lonja', 'Lj9A553T47' => 'lonja', 'Lsat_1_v5_gn_3_15381' => 'lsa', 'Lsat_1_v5_gn_3_15401' => 'lsa', 'Manes.01G089700' => 'mes', 'Manes.01G089800' => 'mes', 'Manes.01G273400' => 'mes', 'Mapoly0007s0092' => 'mpo', 'Mapoly0022s0130' => 'mpo', 'Mapoly0034s0116' => 'mpo', 'MBI04_g36289_MAGBIO' => 'mbi', 'MBI04_g38561_MAGBIO' => 'mbi', 'MBI04_g38562_MAGBIO' => 'mbi', 'MCO15G261' => 'mco', 'MCO16G346' => 'mco', 'MD04G1054800' => 'mdo', 'MD06G1046500' => 'mdo', 'MD06G1046600' => 'mdo', 'MD07G1096900' => 'mdo', 'MD07G1097200' => 'mdo', 'Medtr5g013480' => 'mtr', 'Medtr5g013540' => 'mtr', 'Medtr7g081200' => 'mtr', 'MELO3C003338.2' => 'cme', 'MELO3C006285.2' => 'cme', 'MELO3C013896.2' => 'cme', 'Migut.E01262' => 'egut', 'Migut.E01632' => 'egut', 'Migut.F01957' => 'egut', 'MSTRG.13777' => 'ama', 'MSTRG.27485' => 'ama', 'MSTRG.9151' => 'ama', 'Nitab4.5_0003335g0030' => 'nta', 'Nitab4.5_0003335g0040' => 'nta', 'Nitab4.5_0004227g0020' => 'nta', 'Nitab4.5_0004227g0030' => 'nta', 'Nn1g00743' => 'nnu', 'Nn1g00744' => 'nnu', 'Nn6g33751' => 'nnu', 'Oeu017206.1' => 'oeu', 'Oeu028057.3' => 'oeu', 'Oeu040671.1' => 'oeu', 'Oeu062966.1' => 'oeu', 'Os03g0100300' => 'osa', 'Os03g0100400' => 'osa', 'Peaxi162Scf00301g00615' => 'pax', 'Peaxi162Scf00301g00621' => 'pax', 'PGR031G0104' => 'pgr', 'PGR042G1059' => 'pgr', 'PGR042G3895' => 'pgr', 'PGSC0003DMG400026213' => 'stu', 'PGSC0003DMG400026214' => 'stu', 'Phvul.002G001900' => 'pvu', 'Phvul.002G002100' => 'pvu', 'Phvul.008G049200' => 'pvu', 'Potri.001G150300' => 'ptr', 'Potri.001G150400' => 'ptr', 'Potri.002G139600' => 'ptr', 'Potri.003G083900' => 'ptr', 'Potri.014G051300' => 'ptr', 'Pp3c15_10740' => 'ppa', 'Pp3c15_21470' => 'ppa', 'Pp3c18_11670' => 'ppa', 'Pp3c9_3160' => 'ppa', 'PRCOL_00000830' => 'pco', 'PRCOL_00002244' => 'pco', 'PRCOL_00002881' => 'pco', 'Prupe.2G121100' => 'ppe', 'Prupe.5G054800' => 'ppe', 'Prupe.5G054900' => 'ppe', 'Psat0s3354g0040' => 'psa', 'Psat2g175640' => 'psa', 'Psat2g175720' => 'psa', 'Psat3g099640' => 'psa', 'Psat4g192040' => 'psa', 'Psat5g084960' => 'psa', 'Psat5g140400' => 'psa', 'Psat7g123840' => 'psa', 'PSO063G1476' => 'pso', 'PSO675G3297' => 'pso', 'QL04p028582' => 'qlo', 'QL04p028706' => 'qlo', 'QL12p008613' => 'qlo', 'QL12p008620' => 'qlo', 'RcHm_v2.0_Chr1g0345271' => 'rch', 'RcHm_v2.0_Chr4g0410431' => 'rch', 'RcHm_v2.0_Chr7g0205791' => 'rch', 'RcHm_v2.0_Chr7g0205801' => 'rch', 'Rhsim07G0136100' => 'rsi', 'Rhsim11G0061800' => 'rsi', 'Rhsim11G0063300' => 'rsi', 'Sabra01G0120100' => 'sbr', 'Sabra01G0120200' => 'sbr', 'Sabra02G0108700' => 'sbr', 'Sabra14G0036400' => 'sbr', 'Sabra14G0038500' => 'sbr', 'SalBow1G0188' => 'sbo', 'SalBow1G4075' => 'sbo', 'SalBow4G3207' => 'sbo', 'Sc01g0007950' => 'sci', 'Sc01g0007960' => 'sci', 'Sed0012793' => 'sed', 'Sed0013079' => 'sed', 'Sed0019172' => 'sed', 'Sed0021992' => 'sed', 'Sed0023004' => 'sed', 'Sed0025805' => 'sed', 'SEGI_01687' => 'sgi', 'SEGI_02234' => 'sgi', 'SEGI_05481' => 'sgi', 'SEGI_20203' => 'sgi', 'SGA_v2.0_scaffold13G06381' => 'sas', 'SGA_v2.0_scaffold6G03161' => 'sas', 'SHI07797' => 'shi', 'SHI07802' => 'shi', 'SMO118G0017' => 'smo', 'SMO141G0008' => 'smo', 'Solyc08g077790.3' => 'sly', 'Solyc08g077800.4' => 'sly', 'Sopen08g026300' => 'spe', 'Sopen08g026310' => 'spe', 'Sp7g00750' => 'spa', 'Sp7g17110' => 'spa', 'SpUn0010_0230' => 'spa', 'TAR636G0264' => 'tar', 'TAR636G2628' => 'tar', 'THA.LOC104807928' => 'tha', 'THA.LOC104812738' => 'tha', 'Thecc.01G400200' => 'tca', 'Thecc.03G239200' => 'tca', 'Thecc.03G239300' => 'tca', 'Thhalv10025645m.g' => 'esa', 'Thhalv10027633m.g' => 'esa', 'TPR.G1517' => 'tpr', 'TPR.G25980' => 'tpr', 'TPR.G31429' => 'tpr', 'TPR.G31432' => 'tpr', 'TPR.G31434' => 'tpr', 'TWI15G0766' => 'twi', 'TWI59G0877' => 'twi', 'TWI81G0509' => 'twi', 'unitig_46.g18602' => 'ugi', 'unitig_699.g19770' => 'ugi', 'vmacro00746' => 'vma', 'vmacro00747' => 'vma', 'VMungo1215G0420' => 'vmu', 'VMungo1215G1416' => 'vmu', 'VMungo1383G1774' => 'vmu', 'Zm00001eb208390' => 'zma', 'Zm00001eb404550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001887' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001887' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001887' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001887' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '349', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p20250' => 'bna', 'A04p14190' => 'bna', 'A08p12850' => 'bna', 'Aa31LG2G13180' => 'aar', 'Aa31LG9G15130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5648' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.575' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3532' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.221' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2631' => 'aag', 'Actinidia02198' => 'ach', 'Actinidia02199' => 'ach', 'Actinidia25913' => 'ach', 'Ah.07g199260' => 'amhyb', 'Ah.07g199270' => 'amhyb', 'Ah.12g053960' => 'amhyb', 'AL7G37640' => 'aly', 'AL7G48280' => 'aly', 'AL7G48350' => 'aly', 'Aqoxy7G00853' => 'aox', 'Aqoxy7G00854' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W2FB9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V75MI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JK48S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9CQCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CW5K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW9JRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RES91D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2ZF2' => 'arhy', 'AT4G17070' => 'ath', 'AT5G41150' => 'ath', 'ATR0107G001' => 'atr', 'ATR0665G190' => 'atr', 'ATR0665G232' => 'atr', 'Atru.chr5.99' => 'acertr', 'Atru.chr9.1199' => 'acertr', 'Atru.chr9.1200' => 'acertr', 'Atru.chr9.1201' => 'acertr', 'Atru.chr9.1202' => 'acertr', 'Atru.chr9.1203' => 'acertr', 'AUR62007171' => 'cqu', 'AUR62007172' => 'cqu', 'AUR62018832' => 'cqu', 'AUR62018833' => 'cqu', 'BcaB04g18384' => 'bca', 'BcaB04g18387' => 'bca', 'BcaB06g27602' => 'bca', 'BcaC02g08980' => 'bca', 'BcaC07g38035' => 'bca', 'BcaNung00127' => 'bca', 'BolC1t02490H' => 'bol', 'BolC4t26415H' => 'bol', 'BolC8t48429H' => 'bol', 'BraA04t17079Z' => 'bra', 'BraA08t33269Z' => 'bra', 'C01p25390' => 'bna', 'C04p48230' => 'bna', 'CAN.G572.14' => 'can', 'CAN.G572.15' => 'can', 'CANSAT21G1847' => 'cansat', 'CANSAT21G2194' => 'cansat', 'CANSAT25G0255' => 'cansat', 'CARHR213220' => 'chi', 'CARHR223650' => 'chi', 'Carub.0007s2433' => 'cru', 'Carub.0007s3432' => 'cru', 'Ca_08045_v3' => 'car', 'Ca_24613_v3' => 'car', 'Ca_24615_v3' => 'car', 'CBR_g39228' => 'cbr', 'CBR_g470' => 'cbr', 'CBR_g69645' => 'cbr', 'Cc08_g11220' => 'ccan', 'Cc08_g11250' => 'ccan', 'CDE02G0676' => 'cde', 'CDE04G2668' => 'cde', 'CDE12G0256' => 'cde', 'Cfa012332' => 'cfa', 'Cfa026920' => 'cfa', 'Ciclev10023925m.g' => 'ccl', 'Ciclev10024418m.g' => 'ccl', 'CiPaw.11G072100' => 'cil', 'CiPaw.12G056000' => 'cil', 'CiPaw.14G018400' => 'cil', 'ClCG05G003040' => 'cla', 'ClCG09G012670' => 'cla', 'ClCG10G002160' => 'cla', 'COL.COLO4_00166' => 'col', 'COL.COLO4_06683' => 'col', 'COL.COLO4_06684' => 'col', 'COL.COLO4_12375' => 'col', 'Cpa.g.c28699.1' => 'cpa', 'Cpa.g.sc98.61' => 'cpa', 'Cpa.g.sc98.64' => 'cpa', 'Cpa.g.sc98.72' => 'cpa', 'Cre02.g080850' => 'cre', 'Cre06.g307800' => 'cre', 'Cre06.g311400' => 'cre', 'Cre13.g603950' => 'cre', 'Cre14.g628450' => 'cre', 'CsaV3_3G002250' => 'csa', 'CsaV3_3G010660' => 'csa', 'CsaV3_3G049790' => 'csa', 'CSS0023599' => 'camsi', 'CSS0038249' => 'camsi', 'DCAR_000656' => 'dca', 'DCAR_029498' => 'dca', 'DCAR_029501' => 'dca', 'DCAR_029503' => 'dca', 'DCAR_032182' => 'dca', 'Dinv07465' => 'din', 'Dinv25138' => 'din', 'Dinv25139' => 'din', 'Dinv28880' => 'din', 'Dinv39794' => 'din', 'Dinv40944' => 'din', 'Dinv43603' => 'din', 'Duzib084G0537' => 'dzi', 'Duzib138G1052' => 'dzi', 'Duzib205G1274' => 'dzi', 'Duzib205G1673' => 'dzi', 'ECA246G2103' => 'eca', 'ECA246G3991' => 'eca', 'EL10Ac5g12260' => 'bvu', 'Eucgr.E00348' => 'egr', 'Eucgr.E00349' => 'egr', 'FAN03G2304' => 'fan', 'FAN06G2496' => 'fan', 'FAN08G2877' => 'fan', 'FAN10G4135' => 'fan', 'FAN13G0006' => 'fan', 'FAN13G0539' => 'fan', 'FAN18G1605' => 'fan', 'FAN18G2460' => 'fan', 'FvH4_5g20470' => 'fve', 'FvH4_5g20480' => 'fve', 'FvH4_7g09211' => 'fve', 'Glyma.01G204300' => 'gma', 'Glyma.01G204467' => 'gma', 'Glyma.01G204533' => 'gma', 'Glyma.09G245200' => 'gma', 'Glyma.11G038500' => 'gma', 'Glyma.11G038700' => 'gma', 'Glyma.17G148700' => 'gma', 'Glyma.18G248100' => 'gma', 'Gohir.A08G162600' => 'ghi', 'Gohir.A08G162700' => 'ghi', 'Gohir.A09G197200' => 'ghi', 'Gohir.A11G074800' => 'ghi', 'Gohir.D08G182600' => 'ghi', 'Gohir.D08G182700' => 'ghi', 'Gohir.D09G191800' => 'ghi', 'Gohir.D11G079500' => 'ghi', 'Gorai.004G191600' => 'gra', 'Gorai.004G191700' => 'gra', 'Gorai.006G214600' => 'gra', 'Gorai.007G085200' => 'gra', 'GSVIVG01002050001' => 'vvi', 'GSVIVG01002051001' => 'vvi', 'GSVIVG01002647001' => 'vvi', 'GSVIVG01003790001' => 'vvi', 'GSVIVG01004825001' => 'vvi', 'GSVIVG01004826001' => 'vvi', 'GSVIVG01018309001' => 'vvi', 'HanXRQChr01g0015991' => 'han', 'HanXRQChr01g0016001' => 'han', 'HanXRQChr17g0535581' => 'han', 'Haze_08360' => 'cav', 'Hma1.2p1_0840F.1_g226690' => 'hma', 'Hma1.2p1_3159F.1_g333390' => 'hma', 'Hma1.2p1_3159F.1_g333400' => 'hma', 'Hma1.2p1_3159F.1_g333410' => 'hma', 'HPP92_000025' => 'vpl', 'HPP92_000026' => 'vpl', 'HPP92_001389' => 'vpl', 'HPP92_002782' => 'vpl', 'HPP92_012638' => 'vpl', 'HPP92_013056' => 'vpl', 'HPP92_025743' => 'vpl', 'HPP92_027917' => 'vpl', 'HPP92_028027' => 'vpl', 'HPP92_028028' => 'vpl', 'HPP92_028029' => 'vpl', 'HPP92_028226' => 'vpl', 'Hund11502' => 'sun', 'Hund14476' => 'sun', 'Hund14477' => 'sun', 'Lalb_Chr01g0021681' => 'lal', 'Lalb_Chr05g0214201' => 'lal', 'Lalb_Chr09g0324121' => 'lal', 'Lalb_Chr09g0324141' => 'lal', 'Lalb_Chr19g0126401' => 'lal', 'Lalb_Chr19g0126411' => 'lal', 'Lj1g0018104' => 'lja', 'Lj2g0000600' => 'lja', 'Lj2g0012346' => 'lja', 'Lj8A278T25' => 'lonja', 'Lj8C277T15' => 'lonja', 'Lj9A553T47' => 'lonja', 'Lsat_1_v5_gn_3_15381' => 'lsa', 'Lsat_1_v5_gn_3_15401' => 'lsa', 'Manes.01G089700' => 'mes', 'Manes.01G089800' => 'mes', 'Manes.01G273400' => 'mes', 'Mapoly0007s0092' => 'mpo', 'Mapoly0022s0130' => 'mpo', 'Mapoly0034s0116' => 'mpo', 'MBI04_g36289_MAGBIO' => 'mbi', 'MBI04_g38561_MAGBIO' => 'mbi', 'MBI04_g38562_MAGBIO' => 'mbi', 'MCO15G261' => 'mco', 'MCO16G346' => 'mco', 'MD04G1054800' => 'mdo', 'MD06G1046500' => 'mdo', 'MD06G1046600' => 'mdo', 'MD07G1096900' => 'mdo', 'MD07G1097200' => 'mdo', 'Medtr5g013480' => 'mtr', 'Medtr5g013540' => 'mtr', 'Medtr7g081200' => 'mtr', 'MELO3C003338.2' => 'cme', 'MELO3C006285.2' => 'cme', 'MELO3C013896.2' => 'cme', 'Migut.E01262' => 'egut', 'Migut.E01632' => 'egut', 'Migut.F01957' => 'egut', 'MSTRG.13777' => 'ama', 'MSTRG.27485' => 'ama', 'MSTRG.9151' => 'ama', 'Nitab4.5_0003335g0030' => 'nta', 'Nitab4.5_0003335g0040' => 'nta', 'Nitab4.5_0004227g0020' => 'nta', 'Nitab4.5_0004227g0030' => 'nta', 'Nn1g00743' => 'nnu', 'Nn1g00744' => 'nnu', 'Nn6g33751' => 'nnu', 'Oeu017206.1' => 'oeu', 'Oeu028057.3' => 'oeu', 'Oeu040671.1' => 'oeu', 'Oeu062966.1' => 'oeu', 'Os03g0100300' => 'osa', 'Os03g0100400' => 'osa', 'Peaxi162Scf00301g00615' => 'pax', 'Peaxi162Scf00301g00621' => 'pax', 'PGR031G0104' => 'pgr', 'PGR042G1059' => 'pgr', 'PGR042G3895' => 'pgr', 'PGSC0003DMG400026213' => 'stu', 'PGSC0003DMG400026214' => 'stu', 'Phvul.002G001900' => 'pvu', 'Phvul.002G002100' => 'pvu', 'Phvul.008G049200' => 'pvu', 'Potri.001G150300' => 'ptr', 'Potri.001G150400' => 'ptr', 'Potri.002G139600' => 'ptr', 'Potri.003G083900' => 'ptr', 'Potri.014G051300' => 'ptr', 'Pp3c15_10740' => 'ppa', 'Pp3c15_21470' => 'ppa', 'Pp3c18_11670' => 'ppa', 'Pp3c9_3160' => 'ppa', 'PRCOL_00000830' => 'pco', 'PRCOL_00002244' => 'pco', 'PRCOL_00002881' => 'pco', 'Prupe.2G121100' => 'ppe', 'Prupe.5G054800' => 'ppe', 'Prupe.5G054900' => 'ppe', 'Psat0s3354g0040' => 'psa', 'Psat2g175640' => 'psa', 'Psat2g175720' => 'psa', 'Psat3g099640' => 'psa', 'Psat4g192040' => 'psa', 'Psat5g084960' => 'psa', 'Psat5g140400' => 'psa', 'Psat7g123840' => 'psa', 'PSO063G1476' => 'pso', 'PSO675G3297' => 'pso', 'QL04p028582' => 'qlo', 'QL04p028706' => 'qlo', 'QL12p008613' => 'qlo', 'QL12p008620' => 'qlo', 'RcHm_v2.0_Chr1g0345271' => 'rch', 'RcHm_v2.0_Chr4g0410431' => 'rch', 'RcHm_v2.0_Chr7g0205791' => 'rch', 'RcHm_v2.0_Chr7g0205801' => 'rch', 'Rhsim07G0136100' => 'rsi', 'Rhsim11G0061800' => 'rsi', 'Rhsim11G0063300' => 'rsi', 'Sabra01G0120100' => 'sbr', 'Sabra01G0120200' => 'sbr', 'Sabra02G0108700' => 'sbr', 'Sabra14G0036400' => 'sbr', 'Sabra14G0038500' => 'sbr', 'SalBow1G0188' => 'sbo', 'SalBow1G4075' => 'sbo', 'SalBow4G3207' => 'sbo', 'Sc01g0007950' => 'sci', 'Sc01g0007960' => 'sci', 'Sed0012793' => 'sed', 'Sed0013079' => 'sed', 'Sed0019172' => 'sed', 'Sed0021992' => 'sed', 'Sed0023004' => 'sed', 'Sed0025805' => 'sed', 'SEGI_01687' => 'sgi', 'SEGI_02234' => 'sgi', 'SEGI_05481' => 'sgi', 'SEGI_20203' => 'sgi', 'SGA_v2.0_scaffold13G06381' => 'sas', 'SGA_v2.0_scaffold6G03161' => 'sas', 'SHI07797' => 'shi', 'SHI07802' => 'shi', 'SMO118G0017' => 'smo', 'SMO141G0008' => 'smo', 'Solyc08g077790.3' => 'sly', 'Solyc08g077800.4' => 'sly', 'Sopen08g026300' => 'spe', 'Sopen08g026310' => 'spe', 'Sp7g00750' => 'spa', 'Sp7g17110' => 'spa', 'SpUn0010_0230' => 'spa', 'TAR636G0264' => 'tar', 'TAR636G2628' => 'tar', 'THA.LOC104807928' => 'tha', 'THA.LOC104812738' => 'tha', 'Thecc.01G400200' => 'tca', 'Thecc.03G239200' => 'tca', 'Thecc.03G239300' => 'tca', 'Thhalv10025645m.g' => 'esa', 'Thhalv10027633m.g' => 'esa', 'TPR.G1517' => 'tpr', 'TPR.G25980' => 'tpr', 'TPR.G31429' => 'tpr', 'TPR.G31432' => 'tpr', 'TPR.G31434' => 'tpr', 'TWI15G0766' => 'twi', 'TWI59G0877' => 'twi', 'TWI81G0509' => 'twi', 'unitig_46.g18602' => 'ugi', 'unitig_699.g19770' => 'ugi', 'vmacro00746' => 'vma', 'vmacro00747' => 'vma', 'VMungo1215G0420' => 'vmu', 'VMungo1215G1416' => 'vmu', 'VMungo1383G1774' => 'vmu', 'Zm00001eb208390' => 'zma', 'Zm00001eb404550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001887', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001887' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '349', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001887' ) ), 'genes' => array( 'A01p20250' => 'bna', 'A04p14190' => 'bna', 'A08p12850' => 'bna', 'Aa31LG2G13180' => 'aar', 'Aa31LG9G15130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5648' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.575' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3532' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.221' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2631' => 'aag', 'Actinidia02198' => 'ach', 'Actinidia02199' => 'ach', 'Actinidia25913' => 'ach', 'Ah.07g199260' => 'amhyb', 'Ah.07g199270' => 'amhyb', 'Ah.12g053960' => 'amhyb', 'AL7G37640' => 'aly', 'AL7G48280' => 'aly', 'AL7G48350' => 'aly', 'Aqoxy7G00853' => 'aox', 'Aqoxy7G00854' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W2FB9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V75MI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JK48S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9CQCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CW5K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW9JRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RES91D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2ZF2' => 'arhy', 'AT4G17070' => 'ath', 'AT5G41150' => 'ath', 'ATR0107G001' => 'atr', 'ATR0665G190' => 'atr', 'ATR0665G232' => 'atr', 'Atru.chr5.99' => 'acertr', 'Atru.chr9.1199' => 'acertr', 'Atru.chr9.1200' => 'acertr', 'Atru.chr9.1201' => 'acertr', 'Atru.chr9.1202' => 'acertr', 'Atru.chr9.1203' => 'acertr', 'AUR62007171' => 'cqu', 'AUR62007172' => 'cqu', 'AUR62018832' => 'cqu', 'AUR62018833' => 'cqu', 'BcaB04g18384' => 'bca', 'BcaB04g18387' => 'bca', 'BcaB06g27602' => 'bca', 'BcaC02g08980' => 'bca', 'BcaC07g38035' => 'bca', 'BcaNung00127' => 'bca', 'BolC1t02490H' => 'bol', 'BolC4t26415H' => 'bol', 'BolC8t48429H' => 'bol', 'BraA04t17079Z' => 'bra', 'BraA08t33269Z' => 'bra', 'C01p25390' => 'bna', 'C04p48230' => 'bna', 'CAN.G572.14' => 'can', 'CAN.G572.15' => 'can', 'CANSAT21G1847' => 'cansat', 'CANSAT21G2194' => 'cansat', 'CANSAT25G0255' => 'cansat', 'CARHR213220' => 'chi', 'CARHR223650' => 'chi', 'Carub.0007s2433' => 'cru', 'Carub.0007s3432' => 'cru', 'Ca_08045_v3' => 'car', 'Ca_24613_v3' => 'car', 'Ca_24615_v3' => 'car', 'CBR_g39228' => 'cbr', 'CBR_g470' => 'cbr', 'CBR_g69645' => 'cbr', 'Cc08_g11220' => 'ccan', 'Cc08_g11250' => 'ccan', 'CDE02G0676' => 'cde', 'CDE04G2668' => 'cde', 'CDE12G0256' => 'cde', 'Cfa012332' => 'cfa', 'Cfa026920' => 'cfa', 'Ciclev10023925m.g' => 'ccl', 'Ciclev10024418m.g' => 'ccl', 'CiPaw.11G072100' => 'cil', 'CiPaw.12G056000' => 'cil', 'CiPaw.14G018400' => 'cil', 'ClCG05G003040' => 'cla', 'ClCG09G012670' => 'cla', 'ClCG10G002160' => 'cla', 'COL.COLO4_00166' => 'col', 'COL.COLO4_06683' => 'col', 'COL.COLO4_06684' => 'col', 'COL.COLO4_12375' => 'col', 'Cpa.g.c28699.1' => 'cpa', 'Cpa.g.sc98.61' => 'cpa', 'Cpa.g.sc98.64' => 'cpa', 'Cpa.g.sc98.72' => 'cpa', 'Cre02.g080850' => 'cre', 'Cre06.g307800' => 'cre', 'Cre06.g311400' => 'cre', 'Cre13.g603950' => 'cre', 'Cre14.g628450' => 'cre', 'CsaV3_3G002250' => 'csa', 'CsaV3_3G010660' => 'csa', 'CsaV3_3G049790' => 'csa', 'CSS0023599' => 'camsi', 'CSS0038249' => 'camsi', 'DCAR_000656' => 'dca', 'DCAR_029498' => 'dca', 'DCAR_029501' => 'dca', 'DCAR_029503' => 'dca', 'DCAR_032182' => 'dca', 'Dinv07465' => 'din', 'Dinv25138' => 'din', 'Dinv25139' => 'din', 'Dinv28880' => 'din', 'Dinv39794' => 'din', 'Dinv40944' => 'din', 'Dinv43603' => 'din', 'Duzib084G0537' => 'dzi', 'Duzib138G1052' => 'dzi', 'Duzib205G1274' => 'dzi', 'Duzib205G1673' => 'dzi', 'ECA246G2103' => 'eca', 'ECA246G3991' => 'eca', 'EL10Ac5g12260' => 'bvu', 'Eucgr.E00348' => 'egr', 'Eucgr.E00349' => 'egr', 'FAN03G2304' => 'fan', 'FAN06G2496' => 'fan', 'FAN08G2877' => 'fan', 'FAN10G4135' => 'fan', 'FAN13G0006' => 'fan', 'FAN13G0539' => 'fan', 'FAN18G1605' => 'fan', 'FAN18G2460' => 'fan', 'FvH4_5g20470' => 'fve', 'FvH4_5g20480' => 'fve', 'FvH4_7g09211' => 'fve', 'Glyma.01G204300' => 'gma', 'Glyma.01G204467' => 'gma', 'Glyma.01G204533' => 'gma', 'Glyma.09G245200' => 'gma', 'Glyma.11G038500' => 'gma', 'Glyma.11G038700' => 'gma', 'Glyma.17G148700' => 'gma', 'Glyma.18G248100' => 'gma', 'Gohir.A08G162600' => 'ghi', 'Gohir.A08G162700' => 'ghi', 'Gohir.A09G197200' => 'ghi', 'Gohir.A11G074800' => 'ghi', 'Gohir.D08G182600' => 'ghi', 'Gohir.D08G182700' => 'ghi', 'Gohir.D09G191800' => 'ghi', 'Gohir.D11G079500' => 'ghi', 'Gorai.004G191600' => 'gra', 'Gorai.004G191700' => 'gra', 'Gorai.006G214600' => 'gra', 'Gorai.007G085200' => 'gra', 'GSVIVG01002050001' => 'vvi', 'GSVIVG01002051001' => 'vvi', 'GSVIVG01002647001' => 'vvi', 'GSVIVG01003790001' => 'vvi', 'GSVIVG01004825001' => 'vvi', 'GSVIVG01004826001' => 'vvi', 'GSVIVG01018309001' => 'vvi', 'HanXRQChr01g0015991' => 'han', 'HanXRQChr01g0016001' => 'han', 'HanXRQChr17g0535581' => 'han', 'Haze_08360' => 'cav', 'Hma1.2p1_0840F.1_g226690' => 'hma', 'Hma1.2p1_3159F.1_g333390' => 'hma', 'Hma1.2p1_3159F.1_g333400' => 'hma', 'Hma1.2p1_3159F.1_g333410' => 'hma', 'HPP92_000025' => 'vpl', 'HPP92_000026' => 'vpl', 'HPP92_001389' => 'vpl', 'HPP92_002782' => 'vpl', 'HPP92_012638' => 'vpl', 'HPP92_013056' => 'vpl', 'HPP92_025743' => 'vpl', 'HPP92_027917' => 'vpl', 'HPP92_028027' => 'vpl', 'HPP92_028028' => 'vpl', 'HPP92_028029' => 'vpl', 'HPP92_028226' => 'vpl', 'Hund11502' => 'sun', 'Hund14476' => 'sun', 'Hund14477' => 'sun', 'Lalb_Chr01g0021681' => 'lal', 'Lalb_Chr05g0214201' => 'lal', 'Lalb_Chr09g0324121' => 'lal', 'Lalb_Chr09g0324141' => 'lal', 'Lalb_Chr19g0126401' => 'lal', 'Lalb_Chr19g0126411' => 'lal', 'Lj1g0018104' => 'lja', 'Lj2g0000600' => 'lja', 'Lj2g0012346' => 'lja', 'Lj8A278T25' => 'lonja', 'Lj8C277T15' => 'lonja', 'Lj9A553T47' => 'lonja', 'Lsat_1_v5_gn_3_15381' => 'lsa', 'Lsat_1_v5_gn_3_15401' => 'lsa', 'Manes.01G089700' => 'mes', 'Manes.01G089800' => 'mes', 'Manes.01G273400' => 'mes', 'Mapoly0007s0092' => 'mpo', 'Mapoly0022s0130' => 'mpo', 'Mapoly0034s0116' => 'mpo', 'MBI04_g36289_MAGBIO' => 'mbi', 'MBI04_g38561_MAGBIO' => 'mbi', 'MBI04_g38562_MAGBIO' => 'mbi', 'MCO15G261' => 'mco', 'MCO16G346' => 'mco', 'MD04G1054800' => 'mdo', 'MD06G1046500' => 'mdo', 'MD06G1046600' => 'mdo', 'MD07G1096900' => 'mdo', 'MD07G1097200' => 'mdo', 'Medtr5g013480' => 'mtr', 'Medtr5g013540' => 'mtr', 'Medtr7g081200' => 'mtr', 'MELO3C003338.2' => 'cme', 'MELO3C006285.2' => 'cme', 'MELO3C013896.2' => 'cme', 'Migut.E01262' => 'egut', 'Migut.E01632' => 'egut', 'Migut.F01957' => 'egut', 'MSTRG.13777' => 'ama', 'MSTRG.27485' => 'ama', 'MSTRG.9151' => 'ama', 'Nitab4.5_0003335g0030' => 'nta', 'Nitab4.5_0003335g0040' => 'nta', 'Nitab4.5_0004227g0020' => 'nta', 'Nitab4.5_0004227g0030' => 'nta', 'Nn1g00743' => 'nnu', 'Nn1g00744' => 'nnu', 'Nn6g33751' => 'nnu', 'Oeu017206.1' => 'oeu', 'Oeu028057.3' => 'oeu', 'Oeu040671.1' => 'oeu', 'Oeu062966.1' => 'oeu', 'Os03g0100300' => 'osa', 'Os03g0100400' => 'osa', 'Peaxi162Scf00301g00615' => 'pax', 'Peaxi162Scf00301g00621' => 'pax', 'PGR031G0104' => 'pgr', 'PGR042G1059' => 'pgr', 'PGR042G3895' => 'pgr', 'PGSC0003DMG400026213' => 'stu', 'PGSC0003DMG400026214' => 'stu', 'Phvul.002G001900' => 'pvu', 'Phvul.002G002100' => 'pvu', 'Phvul.008G049200' => 'pvu', 'Potri.001G150300' => 'ptr', 'Potri.001G150400' => 'ptr', 'Potri.002G139600' => 'ptr', 'Potri.003G083900' => 'ptr', 'Potri.014G051300' => 'ptr', 'Pp3c15_10740' => 'ppa', 'Pp3c15_21470' => 'ppa', 'Pp3c18_11670' => 'ppa', 'Pp3c9_3160' => 'ppa', 'PRCOL_00000830' => 'pco', 'PRCOL_00002244' => 'pco', 'PRCOL_00002881' => 'pco', 'Prupe.2G121100' => 'ppe', 'Prupe.5G054800' => 'ppe', 'Prupe.5G054900' => 'ppe', 'Psat0s3354g0040' => 'psa', 'Psat2g175640' => 'psa', 'Psat2g175720' => 'psa', 'Psat3g099640' => 'psa', 'Psat4g192040' => 'psa', 'Psat5g084960' => 'psa', 'Psat5g140400' => 'psa', 'Psat7g123840' => 'psa', 'PSO063G1476' => 'pso', 'PSO675G3297' => 'pso', 'QL04p028582' => 'qlo', 'QL04p028706' => 'qlo', 'QL12p008613' => 'qlo', 'QL12p008620' => 'qlo', 'RcHm_v2.0_Chr1g0345271' => 'rch', 'RcHm_v2.0_Chr4g0410431' => 'rch', 'RcHm_v2.0_Chr7g0205791' => 'rch', 'RcHm_v2.0_Chr7g0205801' => 'rch', 'Rhsim07G0136100' => 'rsi', 'Rhsim11G0061800' => 'rsi', 'Rhsim11G0063300' => 'rsi', 'Sabra01G0120100' => 'sbr', 'Sabra01G0120200' => 'sbr', 'Sabra02G0108700' => 'sbr', 'Sabra14G0036400' => 'sbr', 'Sabra14G0038500' => 'sbr', 'SalBow1G0188' => 'sbo', 'SalBow1G4075' => 'sbo', 'SalBow4G3207' => 'sbo', 'Sc01g0007950' => 'sci', 'Sc01g0007960' => 'sci', 'Sed0012793' => 'sed', 'Sed0013079' => 'sed', 'Sed0019172' => 'sed', 'Sed0021992' => 'sed', 'Sed0023004' => 'sed', 'Sed0025805' => 'sed', 'SEGI_01687' => 'sgi', 'SEGI_02234' => 'sgi', 'SEGI_05481' => 'sgi', 'SEGI_20203' => 'sgi', 'SGA_v2.0_scaffold13G06381' => 'sas', 'SGA_v2.0_scaffold6G03161' => 'sas', 'SHI07797' => 'shi', 'SHI07802' => 'shi', 'SMO118G0017' => 'smo', 'SMO141G0008' => 'smo', 'Solyc08g077790.3' => 'sly', 'Solyc08g077800.4' => 'sly', 'Sopen08g026300' => 'spe', 'Sopen08g026310' => 'spe', 'Sp7g00750' => 'spa', 'Sp7g17110' => 'spa', 'SpUn0010_0230' => 'spa', 'TAR636G0264' => 'tar', 'TAR636G2628' => 'tar', 'THA.LOC104807928' => 'tha', 'THA.LOC104812738' => 'tha', 'Thecc.01G400200' => 'tca', 'Thecc.03G239200' => 'tca', 'Thecc.03G239300' => 'tca', 'Thhalv10025645m.g' => 'esa', 'Thhalv10027633m.g' => 'esa', 'TPR.G1517' => 'tpr', 'TPR.G25980' => 'tpr', 'TPR.G31429' => 'tpr', 'TPR.G31432' => 'tpr', 'TPR.G31434' => 'tpr', 'TWI15G0766' => 'twi', 'TWI59G0877' => 'twi', 'TWI81G0509' => 'twi', 'unitig_46.g18602' => 'ugi', 'unitig_699.g19770' => 'ugi', 'vmacro00746' => 'vma', 'vmacro00747' => 'vma', 'VMungo1215G0420' => 'vmu', 'VMungo1215G1416' => 'vmu', 'VMungo1383G1774' => 'vmu', 'Zm00001eb208390' => 'zma', 'Zm00001eb404550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001887' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001887' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001887' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001887' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '349', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p20250' => 'bna', 'A04p14190' => 'bna', 'A08p12850' => 'bna', 'Aa31LG2G13180' => 'aar', 'Aa31LG9G15130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5648' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.575' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3532' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.221' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2631' => 'aag', 'Actinidia02198' => 'ach', 'Actinidia02199' => 'ach', 'Actinidia25913' => 'ach', 'Ah.07g199260' => 'amhyb', 'Ah.07g199270' => 'amhyb', 'Ah.12g053960' => 'amhyb', 'AL7G37640' => 'aly', 'AL7G48280' => 'aly', 'AL7G48350' => 'aly', 'Aqoxy7G00853' => 'aox', 'Aqoxy7G00854' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W2FB9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V75MI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JK48S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9CQCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CW5K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW9JRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RES91D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2ZF2' => 'arhy', 'AT4G17070' => 'ath', 'AT5G41150' => 'ath', 'ATR0107G001' => 'atr', 'ATR0665G190' => 'atr', 'ATR0665G232' => 'atr', 'Atru.chr5.99' => 'acertr', 'Atru.chr9.1199' => 'acertr', 'Atru.chr9.1200' => 'acertr', 'Atru.chr9.1201' => 'acertr', 'Atru.chr9.1202' => 'acertr', 'Atru.chr9.1203' => 'acertr', 'AUR62007171' => 'cqu', 'AUR62007172' => 'cqu', 'AUR62018832' => 'cqu', 'AUR62018833' => 'cqu', 'BcaB04g18384' => 'bca', 'BcaB04g18387' => 'bca', 'BcaB06g27602' => 'bca', 'BcaC02g08980' => 'bca', 'BcaC07g38035' => 'bca', 'BcaNung00127' => 'bca', 'BolC1t02490H' => 'bol', 'BolC4t26415H' => 'bol', 'BolC8t48429H' => 'bol', 'BraA04t17079Z' => 'bra', 'BraA08t33269Z' => 'bra', 'C01p25390' => 'bna', 'C04p48230' => 'bna', 'CAN.G572.14' => 'can', 'CAN.G572.15' => 'can', 'CANSAT21G1847' => 'cansat', 'CANSAT21G2194' => 'cansat', 'CANSAT25G0255' => 'cansat', 'CARHR213220' => 'chi', 'CARHR223650' => 'chi', 'Carub.0007s2433' => 'cru', 'Carub.0007s3432' => 'cru', 'Ca_08045_v3' => 'car', 'Ca_24613_v3' => 'car', 'Ca_24615_v3' => 'car', 'CBR_g39228' => 'cbr', 'CBR_g470' => 'cbr', 'CBR_g69645' => 'cbr', 'Cc08_g11220' => 'ccan', 'Cc08_g11250' => 'ccan', 'CDE02G0676' => 'cde', 'CDE04G2668' => 'cde', 'CDE12G0256' => 'cde', 'Cfa012332' => 'cfa', 'Cfa026920' => 'cfa', 'Ciclev10023925m.g' => 'ccl', 'Ciclev10024418m.g' => 'ccl', 'CiPaw.11G072100' => 'cil', 'CiPaw.12G056000' => 'cil', 'CiPaw.14G018400' => 'cil', 'ClCG05G003040' => 'cla', 'ClCG09G012670' => 'cla', 'ClCG10G002160' => 'cla', 'COL.COLO4_00166' => 'col', 'COL.COLO4_06683' => 'col', 'COL.COLO4_06684' => 'col', 'COL.COLO4_12375' => 'col', 'Cpa.g.c28699.1' => 'cpa', 'Cpa.g.sc98.61' => 'cpa', 'Cpa.g.sc98.64' => 'cpa', 'Cpa.g.sc98.72' => 'cpa', 'Cre02.g080850' => 'cre', 'Cre06.g307800' => 'cre', 'Cre06.g311400' => 'cre', 'Cre13.g603950' => 'cre', 'Cre14.g628450' => 'cre', 'CsaV3_3G002250' => 'csa', 'CsaV3_3G010660' => 'csa', 'CsaV3_3G049790' => 'csa', 'CSS0023599' => 'camsi', 'CSS0038249' => 'camsi', 'DCAR_000656' => 'dca', 'DCAR_029498' => 'dca', 'DCAR_029501' => 'dca', 'DCAR_029503' => 'dca', 'DCAR_032182' => 'dca', 'Dinv07465' => 'din', 'Dinv25138' => 'din', 'Dinv25139' => 'din', 'Dinv28880' => 'din', 'Dinv39794' => 'din', 'Dinv40944' => 'din', 'Dinv43603' => 'din', 'Duzib084G0537' => 'dzi', 'Duzib138G1052' => 'dzi', 'Duzib205G1274' => 'dzi', 'Duzib205G1673' => 'dzi', 'ECA246G2103' => 'eca', 'ECA246G3991' => 'eca', 'EL10Ac5g12260' => 'bvu', 'Eucgr.E00348' => 'egr', 'Eucgr.E00349' => 'egr', 'FAN03G2304' => 'fan', 'FAN06G2496' => 'fan', 'FAN08G2877' => 'fan', 'FAN10G4135' => 'fan', 'FAN13G0006' => 'fan', 'FAN13G0539' => 'fan', 'FAN18G1605' => 'fan', 'FAN18G2460' => 'fan', 'FvH4_5g20470' => 'fve', 'FvH4_5g20480' => 'fve', 'FvH4_7g09211' => 'fve', 'Glyma.01G204300' => 'gma', 'Glyma.01G204467' => 'gma', 'Glyma.01G204533' => 'gma', 'Glyma.09G245200' => 'gma', 'Glyma.11G038500' => 'gma', 'Glyma.11G038700' => 'gma', 'Glyma.17G148700' => 'gma', 'Glyma.18G248100' => 'gma', 'Gohir.A08G162600' => 'ghi', 'Gohir.A08G162700' => 'ghi', 'Gohir.A09G197200' => 'ghi', 'Gohir.A11G074800' => 'ghi', 'Gohir.D08G182600' => 'ghi', 'Gohir.D08G182700' => 'ghi', 'Gohir.D09G191800' => 'ghi', 'Gohir.D11G079500' => 'ghi', 'Gorai.004G191600' => 'gra', 'Gorai.004G191700' => 'gra', 'Gorai.006G214600' => 'gra', 'Gorai.007G085200' => 'gra', 'GSVIVG01002050001' => 'vvi', 'GSVIVG01002051001' => 'vvi', 'GSVIVG01002647001' => 'vvi', 'GSVIVG01003790001' => 'vvi', 'GSVIVG01004825001' => 'vvi', 'GSVIVG01004826001' => 'vvi', 'GSVIVG01018309001' => 'vvi', 'HanXRQChr01g0015991' => 'han', 'HanXRQChr01g0016001' => 'han', 'HanXRQChr17g0535581' => 'han', 'Haze_08360' => 'cav', 'Hma1.2p1_0840F.1_g226690' => 'hma', 'Hma1.2p1_3159F.1_g333390' => 'hma', 'Hma1.2p1_3159F.1_g333400' => 'hma', 'Hma1.2p1_3159F.1_g333410' => 'hma', 'HPP92_000025' => 'vpl', 'HPP92_000026' => 'vpl', 'HPP92_001389' => 'vpl', 'HPP92_002782' => 'vpl', 'HPP92_012638' => 'vpl', 'HPP92_013056' => 'vpl', 'HPP92_025743' => 'vpl', 'HPP92_027917' => 'vpl', 'HPP92_028027' => 'vpl', 'HPP92_028028' => 'vpl', 'HPP92_028029' => 'vpl', 'HPP92_028226' => 'vpl', 'Hund11502' => 'sun', 'Hund14476' => 'sun', 'Hund14477' => 'sun', 'Lalb_Chr01g0021681' => 'lal', 'Lalb_Chr05g0214201' => 'lal', 'Lalb_Chr09g0324121' => 'lal', 'Lalb_Chr09g0324141' => 'lal', 'Lalb_Chr19g0126401' => 'lal', 'Lalb_Chr19g0126411' => 'lal', 'Lj1g0018104' => 'lja', 'Lj2g0000600' => 'lja', 'Lj2g0012346' => 'lja', 'Lj8A278T25' => 'lonja', 'Lj8C277T15' => 'lonja', 'Lj9A553T47' => 'lonja', 'Lsat_1_v5_gn_3_15381' => 'lsa', 'Lsat_1_v5_gn_3_15401' => 'lsa', 'Manes.01G089700' => 'mes', 'Manes.01G089800' => 'mes', 'Manes.01G273400' => 'mes', 'Mapoly0007s0092' => 'mpo', 'Mapoly0022s0130' => 'mpo', 'Mapoly0034s0116' => 'mpo', 'MBI04_g36289_MAGBIO' => 'mbi', 'MBI04_g38561_MAGBIO' => 'mbi', 'MBI04_g38562_MAGBIO' => 'mbi', 'MCO15G261' => 'mco', 'MCO16G346' => 'mco', 'MD04G1054800' => 'mdo', 'MD06G1046500' => 'mdo', 'MD06G1046600' => 'mdo', 'MD07G1096900' => 'mdo', 'MD07G1097200' => 'mdo', 'Medtr5g013480' => 'mtr', 'Medtr5g013540' => 'mtr', 'Medtr7g081200' => 'mtr', 'MELO3C003338.2' => 'cme', 'MELO3C006285.2' => 'cme', 'MELO3C013896.2' => 'cme', 'Migut.E01262' => 'egut', 'Migut.E01632' => 'egut', 'Migut.F01957' => 'egut', 'MSTRG.13777' => 'ama', 'MSTRG.27485' => 'ama', 'MSTRG.9151' => 'ama', 'Nitab4.5_0003335g0030' => 'nta', 'Nitab4.5_0003335g0040' => 'nta', 'Nitab4.5_0004227g0020' => 'nta', 'Nitab4.5_0004227g0030' => 'nta', 'Nn1g00743' => 'nnu', 'Nn1g00744' => 'nnu', 'Nn6g33751' => 'nnu', 'Oeu017206.1' => 'oeu', 'Oeu028057.3' => 'oeu', 'Oeu040671.1' => 'oeu', 'Oeu062966.1' => 'oeu', 'Os03g0100300' => 'osa', 'Os03g0100400' => 'osa', 'Peaxi162Scf00301g00615' => 'pax', 'Peaxi162Scf00301g00621' => 'pax', 'PGR031G0104' => 'pgr', 'PGR042G1059' => 'pgr', 'PGR042G3895' => 'pgr', 'PGSC0003DMG400026213' => 'stu', 'PGSC0003DMG400026214' => 'stu', 'Phvul.002G001900' => 'pvu', 'Phvul.002G002100' => 'pvu', 'Phvul.008G049200' => 'pvu', 'Potri.001G150300' => 'ptr', 'Potri.001G150400' => 'ptr', 'Potri.002G139600' => 'ptr', 'Potri.003G083900' => 'ptr', 'Potri.014G051300' => 'ptr', 'Pp3c15_10740' => 'ppa', 'Pp3c15_21470' => 'ppa', 'Pp3c18_11670' => 'ppa', 'Pp3c9_3160' => 'ppa', 'PRCOL_00000830' => 'pco', 'PRCOL_00002244' => 'pco', 'PRCOL_00002881' => 'pco', 'Prupe.2G121100' => 'ppe', 'Prupe.5G054800' => 'ppe', 'Prupe.5G054900' => 'ppe', 'Psat0s3354g0040' => 'psa', 'Psat2g175640' => 'psa', 'Psat2g175720' => 'psa', 'Psat3g099640' => 'psa', 'Psat4g192040' => 'psa', 'Psat5g084960' => 'psa', 'Psat5g140400' => 'psa', 'Psat7g123840' => 'psa', 'PSO063G1476' => 'pso', 'PSO675G3297' => 'pso', 'QL04p028582' => 'qlo', 'QL04p028706' => 'qlo', 'QL12p008613' => 'qlo', 'QL12p008620' => 'qlo', 'RcHm_v2.0_Chr1g0345271' => 'rch', 'RcHm_v2.0_Chr4g0410431' => 'rch', 'RcHm_v2.0_Chr7g0205791' => 'rch', 'RcHm_v2.0_Chr7g0205801' => 'rch', 'Rhsim07G0136100' => 'rsi', 'Rhsim11G0061800' => 'rsi', 'Rhsim11G0063300' => 'rsi', 'Sabra01G0120100' => 'sbr', 'Sabra01G0120200' => 'sbr', 'Sabra02G0108700' => 'sbr', 'Sabra14G0036400' => 'sbr', 'Sabra14G0038500' => 'sbr', 'SalBow1G0188' => 'sbo', 'SalBow1G4075' => 'sbo', 'SalBow4G3207' => 'sbo', 'Sc01g0007950' => 'sci', 'Sc01g0007960' => 'sci', 'Sed0012793' => 'sed', 'Sed0013079' => 'sed', 'Sed0019172' => 'sed', 'Sed0021992' => 'sed', 'Sed0023004' => 'sed', 'Sed0025805' => 'sed', 'SEGI_01687' => 'sgi', 'SEGI_02234' => 'sgi', 'SEGI_05481' => 'sgi', 'SEGI_20203' => 'sgi', 'SGA_v2.0_scaffold13G06381' => 'sas', 'SGA_v2.0_scaffold6G03161' => 'sas', 'SHI07797' => 'shi', 'SHI07802' => 'shi', 'SMO118G0017' => 'smo', 'SMO141G0008' => 'smo', 'Solyc08g077790.3' => 'sly', 'Solyc08g077800.4' => 'sly', 'Sopen08g026300' => 'spe', 'Sopen08g026310' => 'spe', 'Sp7g00750' => 'spa', 'Sp7g17110' => 'spa', 'SpUn0010_0230' => 'spa', 'TAR636G0264' => 'tar', 'TAR636G2628' => 'tar', 'THA.LOC104807928' => 'tha', 'THA.LOC104812738' => 'tha', 'Thecc.01G400200' => 'tca', 'Thecc.03G239200' => 'tca', 'Thecc.03G239300' => 'tca', 'Thhalv10025645m.g' => 'esa', 'Thhalv10027633m.g' => 'esa', 'TPR.G1517' => 'tpr', 'TPR.G25980' => 'tpr', 'TPR.G31429' => 'tpr', 'TPR.G31432' => 'tpr', 'TPR.G31434' => 'tpr', 'TWI15G0766' => 'twi', 'TWI59G0877' => 'twi', 'TWI81G0509' => 'twi', 'unitig_46.g18602' => 'ugi', 'unitig_699.g19770' => 'ugi', 'vmacro00746' => 'vma', 'vmacro00747' => 'vma', 'VMungo1215G0420' => 'vmu', 'VMungo1215G1416' => 'vmu', 'VMungo1383G1774' => 'vmu', 'Zm00001eb208390' => 'zma', 'Zm00001eb404550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001887', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001887' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '349', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001887' ) ), 'genes' => array( 'A01p20250' => 'bna', 'A04p14190' => 'bna', 'A08p12850' => 'bna', 'Aa31LG2G13180' => 'aar', 'Aa31LG9G15130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5648' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.575' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3532' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.221' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2631' => 'aag', 'Actinidia02198' => 'ach', 'Actinidia02199' => 'ach', 'Actinidia25913' => 'ach', 'Ah.07g199260' => 'amhyb', 'Ah.07g199270' => 'amhyb', 'Ah.12g053960' => 'amhyb', 'AL7G37640' => 'aly', 'AL7G48280' => 'aly', 'AL7G48350' => 'aly', 'Aqoxy7G00853' => 'aox', 'Aqoxy7G00854' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W2FB9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V75MI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JK48S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9CQCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CW5K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW9JRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RES91D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2ZF2' => 'arhy', 'AT4G17070' => 'ath', 'AT5G41150' => 'ath', 'ATR0107G001' => 'atr', 'ATR0665G190' => 'atr', 'ATR0665G232' => 'atr', 'Atru.chr5.99' => 'acertr', 'Atru.chr9.1199' => 'acertr', 'Atru.chr9.1200' => 'acertr', 'Atru.chr9.1201' => 'acertr', 'Atru.chr9.1202' => 'acertr', 'Atru.chr9.1203' => 'acertr', 'AUR62007171' => 'cqu', 'AUR62007172' => 'cqu', 'AUR62018832' => 'cqu', 'AUR62018833' => 'cqu', 'BcaB04g18384' => 'bca', 'BcaB04g18387' => 'bca', 'BcaB06g27602' => 'bca', 'BcaC02g08980' => 'bca', 'BcaC07g38035' => 'bca', 'BcaNung00127' => 'bca', 'BolC1t02490H' => 'bol', 'BolC4t26415H' => 'bol', 'BolC8t48429H' => 'bol', 'BraA04t17079Z' => 'bra', 'BraA08t33269Z' => 'bra', 'C01p25390' => 'bna', 'C04p48230' => 'bna', 'CAN.G572.14' => 'can', 'CAN.G572.15' => 'can', 'CANSAT21G1847' => 'cansat', 'CANSAT21G2194' => 'cansat', 'CANSAT25G0255' => 'cansat', 'CARHR213220' => 'chi', 'CARHR223650' => 'chi', 'Carub.0007s2433' => 'cru', 'Carub.0007s3432' => 'cru', 'Ca_08045_v3' => 'car', 'Ca_24613_v3' => 'car', 'Ca_24615_v3' => 'car', 'CBR_g39228' => 'cbr', 'CBR_g470' => 'cbr', 'CBR_g69645' => 'cbr', 'Cc08_g11220' => 'ccan', 'Cc08_g11250' => 'ccan', 'CDE02G0676' => 'cde', 'CDE04G2668' => 'cde', 'CDE12G0256' => 'cde', 'Cfa012332' => 'cfa', 'Cfa026920' => 'cfa', 'Ciclev10023925m.g' => 'ccl', 'Ciclev10024418m.g' => 'ccl', 'CiPaw.11G072100' => 'cil', 'CiPaw.12G056000' => 'cil', 'CiPaw.14G018400' => 'cil', 'ClCG05G003040' => 'cla', 'ClCG09G012670' => 'cla', 'ClCG10G002160' => 'cla', 'COL.COLO4_00166' => 'col', 'COL.COLO4_06683' => 'col', 'COL.COLO4_06684' => 'col', 'COL.COLO4_12375' => 'col', 'Cpa.g.c28699.1' => 'cpa', 'Cpa.g.sc98.61' => 'cpa', 'Cpa.g.sc98.64' => 'cpa', 'Cpa.g.sc98.72' => 'cpa', 'Cre02.g080850' => 'cre', 'Cre06.g307800' => 'cre', 'Cre06.g311400' => 'cre', 'Cre13.g603950' => 'cre', 'Cre14.g628450' => 'cre', 'CsaV3_3G002250' => 'csa', 'CsaV3_3G010660' => 'csa', 'CsaV3_3G049790' => 'csa', 'CSS0023599' => 'camsi', 'CSS0038249' => 'camsi', 'DCAR_000656' => 'dca', 'DCAR_029498' => 'dca', 'DCAR_029501' => 'dca', 'DCAR_029503' => 'dca', 'DCAR_032182' => 'dca', 'Dinv07465' => 'din', 'Dinv25138' => 'din', 'Dinv25139' => 'din', 'Dinv28880' => 'din', 'Dinv39794' => 'din', 'Dinv40944' => 'din', 'Dinv43603' => 'din', 'Duzib084G0537' => 'dzi', 'Duzib138G1052' => 'dzi', 'Duzib205G1274' => 'dzi', 'Duzib205G1673' => 'dzi', 'ECA246G2103' => 'eca', 'ECA246G3991' => 'eca', 'EL10Ac5g12260' => 'bvu', 'Eucgr.E00348' => 'egr', 'Eucgr.E00349' => 'egr', 'FAN03G2304' => 'fan', 'FAN06G2496' => 'fan', 'FAN08G2877' => 'fan', 'FAN10G4135' => 'fan', 'FAN13G0006' => 'fan', 'FAN13G0539' => 'fan', 'FAN18G1605' => 'fan', 'FAN18G2460' => 'fan', 'FvH4_5g20470' => 'fve', 'FvH4_5g20480' => 'fve', 'FvH4_7g09211' => 'fve', 'Glyma.01G204300' => 'gma', 'Glyma.01G204467' => 'gma', 'Glyma.01G204533' => 'gma', 'Glyma.09G245200' => 'gma', 'Glyma.11G038500' => 'gma', 'Glyma.11G038700' => 'gma', 'Glyma.17G148700' => 'gma', 'Glyma.18G248100' => 'gma', 'Gohir.A08G162600' => 'ghi', 'Gohir.A08G162700' => 'ghi', 'Gohir.A09G197200' => 'ghi', 'Gohir.A11G074800' => 'ghi', 'Gohir.D08G182600' => 'ghi', 'Gohir.D08G182700' => 'ghi', 'Gohir.D09G191800' => 'ghi', 'Gohir.D11G079500' => 'ghi', 'Gorai.004G191600' => 'gra', 'Gorai.004G191700' => 'gra', 'Gorai.006G214600' => 'gra', 'Gorai.007G085200' => 'gra', 'GSVIVG01002050001' => 'vvi', 'GSVIVG01002051001' => 'vvi', 'GSVIVG01002647001' => 'vvi', 'GSVIVG01003790001' => 'vvi', 'GSVIVG01004825001' => 'vvi', 'GSVIVG01004826001' => 'vvi', 'GSVIVG01018309001' => 'vvi', 'HanXRQChr01g0015991' => 'han', 'HanXRQChr01g0016001' => 'han', 'HanXRQChr17g0535581' => 'han', 'Haze_08360' => 'cav', 'Hma1.2p1_0840F.1_g226690' => 'hma', 'Hma1.2p1_3159F.1_g333390' => 'hma', 'Hma1.2p1_3159F.1_g333400' => 'hma', 'Hma1.2p1_3159F.1_g333410' => 'hma', 'HPP92_000025' => 'vpl', 'HPP92_000026' => 'vpl', 'HPP92_001389' => 'vpl', 'HPP92_002782' => 'vpl', 'HPP92_012638' => 'vpl', 'HPP92_013056' => 'vpl', 'HPP92_025743' => 'vpl', 'HPP92_027917' => 'vpl', 'HPP92_028027' => 'vpl', 'HPP92_028028' => 'vpl', 'HPP92_028029' => 'vpl', 'HPP92_028226' => 'vpl', 'Hund11502' => 'sun', 'Hund14476' => 'sun', 'Hund14477' => 'sun', 'Lalb_Chr01g0021681' => 'lal', 'Lalb_Chr05g0214201' => 'lal', 'Lalb_Chr09g0324121' => 'lal', 'Lalb_Chr09g0324141' => 'lal', 'Lalb_Chr19g0126401' => 'lal', 'Lalb_Chr19g0126411' => 'lal', 'Lj1g0018104' => 'lja', 'Lj2g0000600' => 'lja', 'Lj2g0012346' => 'lja', 'Lj8A278T25' => 'lonja', 'Lj8C277T15' => 'lonja', 'Lj9A553T47' => 'lonja', 'Lsat_1_v5_gn_3_15381' => 'lsa', 'Lsat_1_v5_gn_3_15401' => 'lsa', 'Manes.01G089700' => 'mes', 'Manes.01G089800' => 'mes', 'Manes.01G273400' => 'mes', 'Mapoly0007s0092' => 'mpo', 'Mapoly0022s0130' => 'mpo', 'Mapoly0034s0116' => 'mpo', 'MBI04_g36289_MAGBIO' => 'mbi', 'MBI04_g38561_MAGBIO' => 'mbi', 'MBI04_g38562_MAGBIO' => 'mbi', 'MCO15G261' => 'mco', 'MCO16G346' => 'mco', 'MD04G1054800' => 'mdo', 'MD06G1046500' => 'mdo', 'MD06G1046600' => 'mdo', 'MD07G1096900' => 'mdo', 'MD07G1097200' => 'mdo', 'Medtr5g013480' => 'mtr', 'Medtr5g013540' => 'mtr', 'Medtr7g081200' => 'mtr', 'MELO3C003338.2' => 'cme', 'MELO3C006285.2' => 'cme', 'MELO3C013896.2' => 'cme', 'Migut.E01262' => 'egut', 'Migut.E01632' => 'egut', 'Migut.F01957' => 'egut', 'MSTRG.13777' => 'ama', 'MSTRG.27485' => 'ama', 'MSTRG.9151' => 'ama', 'Nitab4.5_0003335g0030' => 'nta', 'Nitab4.5_0003335g0040' => 'nta', 'Nitab4.5_0004227g0020' => 'nta', 'Nitab4.5_0004227g0030' => 'nta', 'Nn1g00743' => 'nnu', 'Nn1g00744' => 'nnu', 'Nn6g33751' => 'nnu', 'Oeu017206.1' => 'oeu', 'Oeu028057.3' => 'oeu', 'Oeu040671.1' => 'oeu', 'Oeu062966.1' => 'oeu', 'Os03g0100300' => 'osa', 'Os03g0100400' => 'osa', 'Peaxi162Scf00301g00615' => 'pax', 'Peaxi162Scf00301g00621' => 'pax', 'PGR031G0104' => 'pgr', 'PGR042G1059' => 'pgr', 'PGR042G3895' => 'pgr', 'PGSC0003DMG400026213' => 'stu', 'PGSC0003DMG400026214' => 'stu', 'Phvul.002G001900' => 'pvu', 'Phvul.002G002100' => 'pvu', 'Phvul.008G049200' => 'pvu', 'Potri.001G150300' => 'ptr', 'Potri.001G150400' => 'ptr', 'Potri.002G139600' => 'ptr', 'Potri.003G083900' => 'ptr', 'Potri.014G051300' => 'ptr', 'Pp3c15_10740' => 'ppa', 'Pp3c15_21470' => 'ppa', 'Pp3c18_11670' => 'ppa', 'Pp3c9_3160' => 'ppa', 'PRCOL_00000830' => 'pco', 'PRCOL_00002244' => 'pco', 'PRCOL_00002881' => 'pco', 'Prupe.2G121100' => 'ppe', 'Prupe.5G054800' => 'ppe', 'Prupe.5G054900' => 'ppe', 'Psat0s3354g0040' => 'psa', 'Psat2g175640' => 'psa', 'Psat2g175720' => 'psa', 'Psat3g099640' => 'psa', 'Psat4g192040' => 'psa', 'Psat5g084960' => 'psa', 'Psat5g140400' => 'psa', 'Psat7g123840' => 'psa', 'PSO063G1476' => 'pso', 'PSO675G3297' => 'pso', 'QL04p028582' => 'qlo', 'QL04p028706' => 'qlo', 'QL12p008613' => 'qlo', 'QL12p008620' => 'qlo', 'RcHm_v2.0_Chr1g0345271' => 'rch', 'RcHm_v2.0_Chr4g0410431' => 'rch', 'RcHm_v2.0_Chr7g0205791' => 'rch', 'RcHm_v2.0_Chr7g0205801' => 'rch', 'Rhsim07G0136100' => 'rsi', 'Rhsim11G0061800' => 'rsi', 'Rhsim11G0063300' => 'rsi', 'Sabra01G0120100' => 'sbr', 'Sabra01G0120200' => 'sbr', 'Sabra02G0108700' => 'sbr', 'Sabra14G0036400' => 'sbr', 'Sabra14G0038500' => 'sbr', 'SalBow1G0188' => 'sbo', 'SalBow1G4075' => 'sbo', 'SalBow4G3207' => 'sbo', 'Sc01g0007950' => 'sci', 'Sc01g0007960' => 'sci', 'Sed0012793' => 'sed', 'Sed0013079' => 'sed', 'Sed0019172' => 'sed', 'Sed0021992' => 'sed', 'Sed0023004' => 'sed', 'Sed0025805' => 'sed', 'SEGI_01687' => 'sgi', 'SEGI_02234' => 'sgi', 'SEGI_05481' => 'sgi', 'SEGI_20203' => 'sgi', 'SGA_v2.0_scaffold13G06381' => 'sas', 'SGA_v2.0_scaffold6G03161' => 'sas', 'SHI07797' => 'shi', 'SHI07802' => 'shi', 'SMO118G0017' => 'smo', 'SMO141G0008' => 'smo', 'Solyc08g077790.3' => 'sly', 'Solyc08g077800.4' => 'sly', 'Sopen08g026300' => 'spe', 'Sopen08g026310' => 'spe', 'Sp7g00750' => 'spa', 'Sp7g17110' => 'spa', 'SpUn0010_0230' => 'spa', 'TAR636G0264' => 'tar', 'TAR636G2628' => 'tar', 'THA.LOC104807928' => 'tha', 'THA.LOC104812738' => 'tha', 'Thecc.01G400200' => 'tca', 'Thecc.03G239200' => 'tca', 'Thecc.03G239300' => 'tca', 'Thhalv10025645m.g' => 'esa', 'Thhalv10027633m.g' => 'esa', 'TPR.G1517' => 'tpr', 'TPR.G25980' => 'tpr', 'TPR.G31429' => 'tpr', 'TPR.G31432' => 'tpr', 'TPR.G31434' => 'tpr', 'TWI15G0766' => 'twi', 'TWI59G0877' => 'twi', 'TWI81G0509' => 'twi', 'unitig_46.g18602' => 'ugi', 'unitig_699.g19770' => 'ugi', 'vmacro00746' => 'vma', 'vmacro00747' => 'vma', 'VMungo1215G0420' => 'vmu', 'VMungo1215G1416' => 'vmu', 'VMungo1383G1774' => 'vmu', 'Zm00001eb208390' => 'zma', 'Zm00001eb404550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001887' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001887' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001887' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001887' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '349', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p20250' => 'bna', 'A04p14190' => 'bna', 'A08p12850' => 'bna', 'Aa31LG2G13180' => 'aar', 'Aa31LG9G15130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5648' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.575' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3532' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.221' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2631' => 'aag', 'Actinidia02198' => 'ach', 'Actinidia02199' => 'ach', 'Actinidia25913' => 'ach', 'Ah.07g199260' => 'amhyb', 'Ah.07g199270' => 'amhyb', 'Ah.12g053960' => 'amhyb', 'AL7G37640' => 'aly', 'AL7G48280' => 'aly', 'AL7G48350' => 'aly', 'Aqoxy7G00853' => 'aox', 'Aqoxy7G00854' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W2FB9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V75MI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JK48S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9CQCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CW5K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW9JRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RES91D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2ZF2' => 'arhy', 'AT4G17070' => 'ath', 'AT5G41150' => 'ath', 'ATR0107G001' => 'atr', 'ATR0665G190' => 'atr', 'ATR0665G232' => 'atr', 'Atru.chr5.99' => 'acertr', 'Atru.chr9.1199' => 'acertr', 'Atru.chr9.1200' => 'acertr', 'Atru.chr9.1201' => 'acertr', 'Atru.chr9.1202' => 'acertr', 'Atru.chr9.1203' => 'acertr', 'AUR62007171' => 'cqu', 'AUR62007172' => 'cqu', 'AUR62018832' => 'cqu', 'AUR62018833' => 'cqu', 'BcaB04g18384' => 'bca', 'BcaB04g18387' => 'bca', 'BcaB06g27602' => 'bca', 'BcaC02g08980' => 'bca', 'BcaC07g38035' => 'bca', 'BcaNung00127' => 'bca', 'BolC1t02490H' => 'bol', 'BolC4t26415H' => 'bol', 'BolC8t48429H' => 'bol', 'BraA04t17079Z' => 'bra', 'BraA08t33269Z' => 'bra', 'C01p25390' => 'bna', 'C04p48230' => 'bna', 'CAN.G572.14' => 'can', 'CAN.G572.15' => 'can', 'CANSAT21G1847' => 'cansat', 'CANSAT21G2194' => 'cansat', 'CANSAT25G0255' => 'cansat', 'CARHR213220' => 'chi', 'CARHR223650' => 'chi', 'Carub.0007s2433' => 'cru', 'Carub.0007s3432' => 'cru', 'Ca_08045_v3' => 'car', 'Ca_24613_v3' => 'car', 'Ca_24615_v3' => 'car', 'CBR_g39228' => 'cbr', 'CBR_g470' => 'cbr', 'CBR_g69645' => 'cbr', 'Cc08_g11220' => 'ccan', 'Cc08_g11250' => 'ccan', 'CDE02G0676' => 'cde', 'CDE04G2668' => 'cde', 'CDE12G0256' => 'cde', 'Cfa012332' => 'cfa', 'Cfa026920' => 'cfa', 'Ciclev10023925m.g' => 'ccl', 'Ciclev10024418m.g' => 'ccl', 'CiPaw.11G072100' => 'cil', 'CiPaw.12G056000' => 'cil', 'CiPaw.14G018400' => 'cil', 'ClCG05G003040' => 'cla', 'ClCG09G012670' => 'cla', 'ClCG10G002160' => 'cla', 'COL.COLO4_00166' => 'col', 'COL.COLO4_06683' => 'col', 'COL.COLO4_06684' => 'col', 'COL.COLO4_12375' => 'col', 'Cpa.g.c28699.1' => 'cpa', 'Cpa.g.sc98.61' => 'cpa', 'Cpa.g.sc98.64' => 'cpa', 'Cpa.g.sc98.72' => 'cpa', 'Cre02.g080850' => 'cre', 'Cre06.g307800' => 'cre', 'Cre06.g311400' => 'cre', 'Cre13.g603950' => 'cre', 'Cre14.g628450' => 'cre', 'CsaV3_3G002250' => 'csa', 'CsaV3_3G010660' => 'csa', 'CsaV3_3G049790' => 'csa', 'CSS0023599' => 'camsi', 'CSS0038249' => 'camsi', 'DCAR_000656' => 'dca', 'DCAR_029498' => 'dca', 'DCAR_029501' => 'dca', 'DCAR_029503' => 'dca', 'DCAR_032182' => 'dca', 'Dinv07465' => 'din', 'Dinv25138' => 'din', 'Dinv25139' => 'din', 'Dinv28880' => 'din', 'Dinv39794' => 'din', 'Dinv40944' => 'din', 'Dinv43603' => 'din', 'Duzib084G0537' => 'dzi', 'Duzib138G1052' => 'dzi', 'Duzib205G1274' => 'dzi', 'Duzib205G1673' => 'dzi', 'ECA246G2103' => 'eca', 'ECA246G3991' => 'eca', 'EL10Ac5g12260' => 'bvu', 'Eucgr.E00348' => 'egr', 'Eucgr.E00349' => 'egr', 'FAN03G2304' => 'fan', 'FAN06G2496' => 'fan', 'FAN08G2877' => 'fan', 'FAN10G4135' => 'fan', 'FAN13G0006' => 'fan', 'FAN13G0539' => 'fan', 'FAN18G1605' => 'fan', 'FAN18G2460' => 'fan', 'FvH4_5g20470' => 'fve', 'FvH4_5g20480' => 'fve', 'FvH4_7g09211' => 'fve', 'Glyma.01G204300' => 'gma', 'Glyma.01G204467' => 'gma', 'Glyma.01G204533' => 'gma', 'Glyma.09G245200' => 'gma', 'Glyma.11G038500' => 'gma', 'Glyma.11G038700' => 'gma', 'Glyma.17G148700' => 'gma', 'Glyma.18G248100' => 'gma', 'Gohir.A08G162600' => 'ghi', 'Gohir.A08G162700' => 'ghi', 'Gohir.A09G197200' => 'ghi', 'Gohir.A11G074800' => 'ghi', 'Gohir.D08G182600' => 'ghi', 'Gohir.D08G182700' => 'ghi', 'Gohir.D09G191800' => 'ghi', 'Gohir.D11G079500' => 'ghi', 'Gorai.004G191600' => 'gra', 'Gorai.004G191700' => 'gra', 'Gorai.006G214600' => 'gra', 'Gorai.007G085200' => 'gra', 'GSVIVG01002050001' => 'vvi', 'GSVIVG01002051001' => 'vvi', 'GSVIVG01002647001' => 'vvi', 'GSVIVG01003790001' => 'vvi', 'GSVIVG01004825001' => 'vvi', 'GSVIVG01004826001' => 'vvi', 'GSVIVG01018309001' => 'vvi', 'HanXRQChr01g0015991' => 'han', 'HanXRQChr01g0016001' => 'han', 'HanXRQChr17g0535581' => 'han', 'Haze_08360' => 'cav', 'Hma1.2p1_0840F.1_g226690' => 'hma', 'Hma1.2p1_3159F.1_g333390' => 'hma', 'Hma1.2p1_3159F.1_g333400' => 'hma', 'Hma1.2p1_3159F.1_g333410' => 'hma', 'HPP92_000025' => 'vpl', 'HPP92_000026' => 'vpl', 'HPP92_001389' => 'vpl', 'HPP92_002782' => 'vpl', 'HPP92_012638' => 'vpl', 'HPP92_013056' => 'vpl', 'HPP92_025743' => 'vpl', 'HPP92_027917' => 'vpl', 'HPP92_028027' => 'vpl', 'HPP92_028028' => 'vpl', 'HPP92_028029' => 'vpl', 'HPP92_028226' => 'vpl', 'Hund11502' => 'sun', 'Hund14476' => 'sun', 'Hund14477' => 'sun', 'Lalb_Chr01g0021681' => 'lal', 'Lalb_Chr05g0214201' => 'lal', 'Lalb_Chr09g0324121' => 'lal', 'Lalb_Chr09g0324141' => 'lal', 'Lalb_Chr19g0126401' => 'lal', 'Lalb_Chr19g0126411' => 'lal', 'Lj1g0018104' => 'lja', 'Lj2g0000600' => 'lja', 'Lj2g0012346' => 'lja', 'Lj8A278T25' => 'lonja', 'Lj8C277T15' => 'lonja', 'Lj9A553T47' => 'lonja', 'Lsat_1_v5_gn_3_15381' => 'lsa', 'Lsat_1_v5_gn_3_15401' => 'lsa', 'Manes.01G089700' => 'mes', 'Manes.01G089800' => 'mes', 'Manes.01G273400' => 'mes', 'Mapoly0007s0092' => 'mpo', 'Mapoly0022s0130' => 'mpo', 'Mapoly0034s0116' => 'mpo', 'MBI04_g36289_MAGBIO' => 'mbi', 'MBI04_g38561_MAGBIO' => 'mbi', 'MBI04_g38562_MAGBIO' => 'mbi', 'MCO15G261' => 'mco', 'MCO16G346' => 'mco', 'MD04G1054800' => 'mdo', 'MD06G1046500' => 'mdo', 'MD06G1046600' => 'mdo', 'MD07G1096900' => 'mdo', 'MD07G1097200' => 'mdo', 'Medtr5g013480' => 'mtr', 'Medtr5g013540' => 'mtr', 'Medtr7g081200' => 'mtr', 'MELO3C003338.2' => 'cme', 'MELO3C006285.2' => 'cme', 'MELO3C013896.2' => 'cme', 'Migut.E01262' => 'egut', 'Migut.E01632' => 'egut', 'Migut.F01957' => 'egut', 'MSTRG.13777' => 'ama', 'MSTRG.27485' => 'ama', 'MSTRG.9151' => 'ama', 'Nitab4.5_0003335g0030' => 'nta', 'Nitab4.5_0003335g0040' => 'nta', 'Nitab4.5_0004227g0020' => 'nta', 'Nitab4.5_0004227g0030' => 'nta', 'Nn1g00743' => 'nnu', 'Nn1g00744' => 'nnu', 'Nn6g33751' => 'nnu', 'Oeu017206.1' => 'oeu', 'Oeu028057.3' => 'oeu', 'Oeu040671.1' => 'oeu', 'Oeu062966.1' => 'oeu', 'Os03g0100300' => 'osa', 'Os03g0100400' => 'osa', 'Peaxi162Scf00301g00615' => 'pax', 'Peaxi162Scf00301g00621' => 'pax', 'PGR031G0104' => 'pgr', 'PGR042G1059' => 'pgr', 'PGR042G3895' => 'pgr', 'PGSC0003DMG400026213' => 'stu', 'PGSC0003DMG400026214' => 'stu', 'Phvul.002G001900' => 'pvu', 'Phvul.002G002100' => 'pvu', 'Phvul.008G049200' => 'pvu', 'Potri.001G150300' => 'ptr', 'Potri.001G150400' => 'ptr', 'Potri.002G139600' => 'ptr', 'Potri.003G083900' => 'ptr', 'Potri.014G051300' => 'ptr', 'Pp3c15_10740' => 'ppa', 'Pp3c15_21470' => 'ppa', 'Pp3c18_11670' => 'ppa', 'Pp3c9_3160' => 'ppa', 'PRCOL_00000830' => 'pco', 'PRCOL_00002244' => 'pco', 'PRCOL_00002881' => 'pco', 'Prupe.2G121100' => 'ppe', 'Prupe.5G054800' => 'ppe', 'Prupe.5G054900' => 'ppe', 'Psat0s3354g0040' => 'psa', 'Psat2g175640' => 'psa', 'Psat2g175720' => 'psa', 'Psat3g099640' => 'psa', 'Psat4g192040' => 'psa', 'Psat5g084960' => 'psa', 'Psat5g140400' => 'psa', 'Psat7g123840' => 'psa', 'PSO063G1476' => 'pso', 'PSO675G3297' => 'pso', 'QL04p028582' => 'qlo', 'QL04p028706' => 'qlo', 'QL12p008613' => 'qlo', 'QL12p008620' => 'qlo', 'RcHm_v2.0_Chr1g0345271' => 'rch', 'RcHm_v2.0_Chr4g0410431' => 'rch', 'RcHm_v2.0_Chr7g0205791' => 'rch', 'RcHm_v2.0_Chr7g0205801' => 'rch', 'Rhsim07G0136100' => 'rsi', 'Rhsim11G0061800' => 'rsi', 'Rhsim11G0063300' => 'rsi', 'Sabra01G0120100' => 'sbr', 'Sabra01G0120200' => 'sbr', 'Sabra02G0108700' => 'sbr', 'Sabra14G0036400' => 'sbr', 'Sabra14G0038500' => 'sbr', 'SalBow1G0188' => 'sbo', 'SalBow1G4075' => 'sbo', 'SalBow4G3207' => 'sbo', 'Sc01g0007950' => 'sci', 'Sc01g0007960' => 'sci', 'Sed0012793' => 'sed', 'Sed0013079' => 'sed', 'Sed0019172' => 'sed', 'Sed0021992' => 'sed', 'Sed0023004' => 'sed', 'Sed0025805' => 'sed', 'SEGI_01687' => 'sgi', 'SEGI_02234' => 'sgi', 'SEGI_05481' => 'sgi', 'SEGI_20203' => 'sgi', 'SGA_v2.0_scaffold13G06381' => 'sas', 'SGA_v2.0_scaffold6G03161' => 'sas', 'SHI07797' => 'shi', 'SHI07802' => 'shi', 'SMO118G0017' => 'smo', 'SMO141G0008' => 'smo', 'Solyc08g077790.3' => 'sly', 'Solyc08g077800.4' => 'sly', 'Sopen08g026300' => 'spe', 'Sopen08g026310' => 'spe', 'Sp7g00750' => 'spa', 'Sp7g17110' => 'spa', 'SpUn0010_0230' => 'spa', 'TAR636G0264' => 'tar', 'TAR636G2628' => 'tar', 'THA.LOC104807928' => 'tha', 'THA.LOC104812738' => 'tha', 'Thecc.01G400200' => 'tca', 'Thecc.03G239200' => 'tca', 'Thecc.03G239300' => 'tca', 'Thhalv10025645m.g' => 'esa', 'Thhalv10027633m.g' => 'esa', 'TPR.G1517' => 'tpr', 'TPR.G25980' => 'tpr', 'TPR.G31429' => 'tpr', 'TPR.G31432' => 'tpr', 'TPR.G31434' => 'tpr', 'TWI15G0766' => 'twi', 'TWI59G0877' => 'twi', 'TWI81G0509' => 'twi', 'unitig_46.g18602' => 'ugi', 'unitig_699.g19770' => 'ugi', 'vmacro00746' => 'vma', 'vmacro00747' => 'vma', 'VMungo1215G0420' => 'vmu', 'VMungo1215G1416' => 'vmu', 'VMungo1383G1774' => 'vmu', 'Zm00001eb208390' => 'zma', 'Zm00001eb404550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001887', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001887' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '349', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001887' ) ), 'genes' => array( 'A01p20250' => 'bna', 'A04p14190' => 'bna', 'A08p12850' => 'bna', 'Aa31LG2G13180' => 'aar', 'Aa31LG9G15130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5648' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.575' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3532' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.221' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2631' => 'aag', 'Actinidia02198' => 'ach', 'Actinidia02199' => 'ach', 'Actinidia25913' => 'ach', 'Ah.07g199260' => 'amhyb', 'Ah.07g199270' => 'amhyb', 'Ah.12g053960' => 'amhyb', 'AL7G37640' => 'aly', 'AL7G48280' => 'aly', 'AL7G48350' => 'aly', 'Aqoxy7G00853' => 'aox', 'Aqoxy7G00854' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1W2FB9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V75MI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JK48S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9CQCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CW5K44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW9JRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RES91D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2ZF2' => 'arhy', 'AT4G17070' => 'ath', 'AT5G41150' => 'ath', 'ATR0107G001' => 'atr', 'ATR0665G190' => 'atr', 'ATR0665G232' => 'atr', 'Atru.chr5.99' => 'acertr', 'Atru.chr9.1199' => 'acertr', 'Atru.chr9.1200' => 'acertr', 'Atru.chr9.1201' => 'acertr', 'Atru.chr9.1202' => 'acertr', 'Atru.chr9.1203' => 'acertr', 'AUR62007171' => 'cqu', 'AUR62007172' => 'cqu', 'AUR62018832' => 'cqu', 'AUR62018833' => 'cqu', 'BcaB04g18384' => 'bca', 'BcaB04g18387' => 'bca', 'BcaB06g27602' => 'bca', 'BcaC02g08980' => 'bca', 'BcaC07g38035' => 'bca', 'BcaNung00127' => 'bca', 'BolC1t02490H' => 'bol', 'BolC4t26415H' => 'bol', 'BolC8t48429H' => 'bol', 'BraA04t17079Z' => 'bra', 'BraA08t33269Z' => 'bra', 'C01p25390' => 'bna', 'C04p48230' => 'bna', 'CAN.G572.14' => 'can', 'CAN.G572.15' => 'can', 'CANSAT21G1847' => 'cansat', 'CANSAT21G2194' => 'cansat', 'CANSAT25G0255' => 'cansat', 'CARHR213220' => 'chi', 'CARHR223650' => 'chi', 'Carub.0007s2433' => 'cru', 'Carub.0007s3432' => 'cru', 'Ca_08045_v3' => 'car', 'Ca_24613_v3' => 'car', 'Ca_24615_v3' => 'car', 'CBR_g39228' => 'cbr', 'CBR_g470' => 'cbr', 'CBR_g69645' => 'cbr', 'Cc08_g11220' => 'ccan', 'Cc08_g11250' => 'ccan', 'CDE02G0676' => 'cde', 'CDE04G2668' => 'cde', 'CDE12G0256' => 'cde', 'Cfa012332' => 'cfa', 'Cfa026920' => 'cfa', 'Ciclev10023925m.g' => 'ccl', 'Ciclev10024418m.g' => 'ccl', 'CiPaw.11G072100' => 'cil', 'CiPaw.12G056000' => 'cil', 'CiPaw.14G018400' => 'cil', 'ClCG05G003040' => 'cla', 'ClCG09G012670' => 'cla', 'ClCG10G002160' => 'cla', 'COL.COLO4_00166' => 'col', 'COL.COLO4_06683' => 'col', 'COL.COLO4_06684' => 'col', 'COL.COLO4_12375' => 'col', 'Cpa.g.c28699.1' => 'cpa', 'Cpa.g.sc98.61' => 'cpa', 'Cpa.g.sc98.64' => 'cpa', 'Cpa.g.sc98.72' => 'cpa', 'Cre02.g080850' => 'cre', 'Cre06.g307800' => 'cre', 'Cre06.g311400' => 'cre', 'Cre13.g603950' => 'cre', 'Cre14.g628450' => 'cre', 'CsaV3_3G002250' => 'csa', 'CsaV3_3G010660' => 'csa', 'CsaV3_3G049790' => 'csa', 'CSS0023599' => 'camsi', 'CSS0038249' => 'camsi', 'DCAR_000656' => 'dca', 'DCAR_029498' => 'dca', 'DCAR_029501' => 'dca', 'DCAR_029503' => 'dca', 'DCAR_032182' => 'dca', 'Dinv07465' => 'din', 'Dinv25138' => 'din', 'Dinv25139' => 'din', 'Dinv28880' => 'din', 'Dinv39794' => 'din', 'Dinv40944' => 'din', 'Dinv43603' => 'din', 'Duzib084G0537' => 'dzi', 'Duzib138G1052' => 'dzi', 'Duzib205G1274' => 'dzi', 'Duzib205G1673' => 'dzi', 'ECA246G2103' => 'eca', 'ECA246G3991' => 'eca', 'EL10Ac5g12260' => 'bvu', 'Eucgr.E00348' => 'egr', 'Eucgr.E00349' => 'egr', 'FAN03G2304' => 'fan', 'FAN06G2496' => 'fan', 'FAN08G2877' => 'fan', 'FAN10G4135' => 'fan', 'FAN13G0006' => 'fan', 'FAN13G0539' => 'fan', 'FAN18G1605' => 'fan', 'FAN18G2460' => 'fan', 'FvH4_5g20470' => 'fve', 'FvH4_5g20480' => 'fve', 'FvH4_7g09211' => 'fve', 'Glyma.01G204300' => 'gma', 'Glyma.01G204467' => 'gma', 'Glyma.01G204533' => 'gma', 'Glyma.09G245200' => 'gma', 'Glyma.11G038500' => 'gma', 'Glyma.11G038700' => 'gma', 'Glyma.17G148700' => 'gma', 'Glyma.18G248100' => 'gma', 'Gohir.A08G162600' => 'ghi', 'Gohir.A08G162700' => 'ghi', 'Gohir.A09G197200' => 'ghi', 'Gohir.A11G074800' => 'ghi', 'Gohir.D08G182600' => 'ghi', 'Gohir.D08G182700' => 'ghi', 'Gohir.D09G191800' => 'ghi', 'Gohir.D11G079500' => 'ghi', 'Gorai.004G191600' => 'gra', 'Gorai.004G191700' => 'gra', 'Gorai.006G214600' => 'gra', 'Gorai.007G085200' => 'gra', 'GSVIVG01002050001' => 'vvi', 'GSVIVG01002051001' => 'vvi', 'GSVIVG01002647001' => 'vvi', 'GSVIVG01003790001' => 'vvi', 'GSVIVG01004825001' => 'vvi', 'GSVIVG01004826001' => 'vvi', 'GSVIVG01018309001' => 'vvi', 'HanXRQChr01g0015991' => 'han', 'HanXRQChr01g0016001' => 'han', 'HanXRQChr17g0535581' => 'han', 'Haze_08360' => 'cav', 'Hma1.2p1_0840F.1_g226690' => 'hma', 'Hma1.2p1_3159F.1_g333390' => 'hma', 'Hma1.2p1_3159F.1_g333400' => 'hma', 'Hma1.2p1_3159F.1_g333410' => 'hma', 'HPP92_000025' => 'vpl', 'HPP92_000026' => 'vpl', 'HPP92_001389' => 'vpl', 'HPP92_002782' => 'vpl', 'HPP92_012638' => 'vpl', 'HPP92_013056' => 'vpl', 'HPP92_025743' => 'vpl', 'HPP92_027917' => 'vpl', 'HPP92_028027' => 'vpl', 'HPP92_028028' => 'vpl', 'HPP92_028029' => 'vpl', 'HPP92_028226' => 'vpl', 'Hund11502' => 'sun', 'Hund14476' => 'sun', 'Hund14477' => 'sun', 'Lalb_Chr01g0021681' => 'lal', 'Lalb_Chr05g0214201' => 'lal', 'Lalb_Chr09g0324121' => 'lal', 'Lalb_Chr09g0324141' => 'lal', 'Lalb_Chr19g0126401' => 'lal', 'Lalb_Chr19g0126411' => 'lal', 'Lj1g0018104' => 'lja', 'Lj2g0000600' => 'lja', 'Lj2g0012346' => 'lja', 'Lj8A278T25' => 'lonja', 'Lj8C277T15' => 'lonja', 'Lj9A553T47' => 'lonja', 'Lsat_1_v5_gn_3_15381' => 'lsa', 'Lsat_1_v5_gn_3_15401' => 'lsa', 'Manes.01G089700' => 'mes', 'Manes.01G089800' => 'mes', 'Manes.01G273400' => 'mes', 'Mapoly0007s0092' => 'mpo', 'Mapoly0022s0130' => 'mpo', 'Mapoly0034s0116' => 'mpo', 'MBI04_g36289_MAGBIO' => 'mbi', 'MBI04_g38561_MAGBIO' => 'mbi', 'MBI04_g38562_MAGBIO' => 'mbi', 'MCO15G261' => 'mco', 'MCO16G346' => 'mco', 'MD04G1054800' => 'mdo', 'MD06G1046500' => 'mdo', 'MD06G1046600' => 'mdo', 'MD07G1096900' => 'mdo', 'MD07G1097200' => 'mdo', 'Medtr5g013480' => 'mtr', 'Medtr5g013540' => 'mtr', 'Medtr7g081200' => 'mtr', 'MELO3C003338.2' => 'cme', 'MELO3C006285.2' => 'cme', 'MELO3C013896.2' => 'cme', 'Migut.E01262' => 'egut', 'Migut.E01632' => 'egut', 'Migut.F01957' => 'egut', 'MSTRG.13777' => 'ama', 'MSTRG.27485' => 'ama', 'MSTRG.9151' => 'ama', 'Nitab4.5_0003335g0030' => 'nta', 'Nitab4.5_0003335g0040' => 'nta', 'Nitab4.5_0004227g0020' => 'nta', 'Nitab4.5_0004227g0030' => 'nta', 'Nn1g00743' => 'nnu', 'Nn1g00744' => 'nnu', 'Nn6g33751' => 'nnu', 'Oeu017206.1' => 'oeu', 'Oeu028057.3' => 'oeu', 'Oeu040671.1' => 'oeu', 'Oeu062966.1' => 'oeu', 'Os03g0100300' => 'osa', 'Os03g0100400' => 'osa', 'Peaxi162Scf00301g00615' => 'pax', 'Peaxi162Scf00301g00621' => 'pax', 'PGR031G0104' => 'pgr', 'PGR042G1059' => 'pgr', 'PGR042G3895' => 'pgr', 'PGSC0003DMG400026213' => 'stu', 'PGSC0003DMG400026214' => 'stu', 'Phvul.002G001900' => 'pvu', 'Phvul.002G002100' => 'pvu', 'Phvul.008G049200' => 'pvu', 'Potri.001G150300' => 'ptr', 'Potri.001G150400' => 'ptr', 'Potri.002G139600' => 'ptr', 'Potri.003G083900' => 'ptr', 'Potri.014G051300' => 'ptr', 'Pp3c15_10740' => 'ppa', 'Pp3c15_21470' => 'ppa', 'Pp3c18_11670' => 'ppa', 'Pp3c9_3160' => 'ppa', 'PRCOL_00000830' => 'pco', 'PRCOL_00002244' => 'pco', 'PRCOL_00002881' => 'pco', 'Prupe.2G121100' => 'ppe', 'Prupe.5G054800' => 'ppe', 'Prupe.5G054900' => 'ppe', 'Psat0s3354g0040' => 'psa', 'Psat2g175640' => 'psa', 'Psat2g175720' => 'psa', 'Psat3g099640' => 'psa', 'Psat4g192040' => 'psa', 'Psat5g084960' => 'psa', 'Psat5g140400' => 'psa', 'Psat7g123840' => 'psa', 'PSO063G1476' => 'pso', 'PSO675G3297' => 'pso', 'QL04p028582' => 'qlo', 'QL04p028706' => 'qlo', 'QL12p008613' => 'qlo', 'QL12p008620' => 'qlo', 'RcHm_v2.0_Chr1g0345271' => 'rch', 'RcHm_v2.0_Chr4g0410431' => 'rch', 'RcHm_v2.0_Chr7g0205791' => 'rch', 'RcHm_v2.0_Chr7g0205801' => 'rch', 'Rhsim07G0136100' => 'rsi', 'Rhsim11G0061800' => 'rsi', 'Rhsim11G0063300' => 'rsi', 'Sabra01G0120100' => 'sbr', 'Sabra01G0120200' => 'sbr', 'Sabra02G0108700' => 'sbr', 'Sabra14G0036400' => 'sbr', 'Sabra14G0038500' => 'sbr', 'SalBow1G0188' => 'sbo', 'SalBow1G4075' => 'sbo', 'SalBow4G3207' => 'sbo', 'Sc01g0007950' => 'sci', 'Sc01g0007960' => 'sci', 'Sed0012793' => 'sed', 'Sed0013079' => 'sed', 'Sed0019172' => 'sed', 'Sed0021992' => 'sed', 'Sed0023004' => 'sed', 'Sed0025805' => 'sed', 'SEGI_01687' => 'sgi', 'SEGI_02234' => 'sgi', 'SEGI_05481' => 'sgi', 'SEGI_20203' => 'sgi', 'SGA_v2.0_scaffold13G06381' => 'sas', 'SGA_v2.0_scaffold6G03161' => 'sas', 'SHI07797' => 'shi', 'SHI07802' => 'shi', 'SMO118G0017' => 'smo', 'SMO141G0008' => 'smo', 'Solyc08g077790.3' => 'sly', 'Solyc08g077800.4' => 'sly', 'Sopen08g026300' => 'spe', 'Sopen08g026310' => 'spe', 'Sp7g00750' => 'spa', 'Sp7g17110' => 'spa', 'SpUn0010_0230' => 'spa', 'TAR636G0264' => 'tar', 'TAR636G2628' => 'tar', 'THA.LOC104807928' => 'tha', 'THA.LOC104812738' => 'tha', 'Thecc.01G400200' => 'tca', 'Thecc.03G239200' => 'tca', 'Thecc.03G239300' => 'tca', 'Thhalv10025645m.g' => 'esa', 'Thhalv10027633m.g' => 'esa', 'TPR.G1517' => 'tpr', 'TPR.G25980' => 'tpr', 'TPR.G31429' => 'tpr', 'TPR.G31432' => 'tpr', 'TPR.G31434' => 'tpr', 'TWI15G0766' => 'twi', 'TWI59G0877' => 'twi', 'TWI81G0509' => 'twi', 'unitig_46.g18602' => 'ugi', 'unitig_699.g19770' => 'ugi', 'vmacro00746' => 'vma', 'vmacro00747' => 'vma', 'VMungo1215G0420' => 'vmu', 'VMungo1215G1416' => 'vmu', 'VMungo1383G1774' => 'vmu', 'Zm00001eb208390' => 'zma', 'Zm00001eb404550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001887' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001887' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001887' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001887' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151