Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 8.8e-289 996.5 602 100.0
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.5e-134 484.2 734 45.6
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 1.0e-103 381.7 684 40.6
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 8.7e-103 378.6 684 40.6
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 4.9e-98 362.8 682 38.6
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 9.0e-92 342.0 685 37.5
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 1.5e-91 341.3 664 37.8
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 2.0e-91 340.9 653 38.6
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.0e-90 338.6 693 37.1
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 2.2e-90 337.4 716 37.2
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-90 337.0 693 36.9
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 7.2e-89 332.4 525 43.2
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 1.3e-87 328.2 699 36.5
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.1e-86 325.1 677 37.4
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 1.1e-86 325.1 690 36.1
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 5.7e-86 322.8 680 37.1
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 7.4e-86 322.4 677 37.2
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 1.3e-85 321.6 682 36.2
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 2.2e-85 320.9 676 36.8
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.8e-85 320.5 665 37.1
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 8.2e-85 318.9 685 35.8
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 4.1e-84 316.6 709 35.7
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 5.3e-84 316.2 670 37.2
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 6.9e-84 315.8 709 35.7
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.2e-83 315.1 681 36.3
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 1.5e-83 314.7 718 35.0
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 2.2e-82 310.8 702 34.3
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 3.8e-82 310.1 691 36.3
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.5e-82 309.3 663 36.5
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 1.1e-81 308.5 721 35.0
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 4.2e-81 306.6 720 34.6
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 7.2e-81 305.8 677 35.3
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 9.4e-81 305.4 664 36.4
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.6e-80 304.7 664 35.1
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.0e-79 302.0 690 34.6
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 1.8e-79 301.2 693 34.8
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 2.3e-79 300.8 694 35.6
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 3.9e-79 300.1 686 35.3
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 8.8e-79 298.9 696 34.3
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 3.3e-78 297.0 672 35.6
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 5.7e-78 296.2 673 34.8
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 7.4e-78 295.8 677 34.1
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 1.7e-77 294.7 696 35.2
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 6.3e-77 292.7 695 34.5
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.4e-76 291.6 695 34.8
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 3.1e-76 290.4 386 48.4
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 9.1e-76 288.9 695 34.2
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 1.5e-75 288.1 679 35.3
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 3.4e-75 287.0 672 34.7
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.4e-75 287.0 661 35.7
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 7.7e-75 285.8 651 34.4
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 7.7e-75 285.8 651 34.6
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 7.7e-75 285.8 687 34.5
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.0e-74 285.4 687 33.3
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.3e-74 285.0 689 34.8
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 2.9e-74 283.9 690 33.8
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 2.9e-74 283.9 672 34.4
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 8.5e-74 282.3 708 33.9
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 8.5e-74 282.3 679 34.8
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 8.5e-74 282.3 633 34.9
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 3.2e-73 280.4 672 33.8
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 7.2e-73 279.3 664 33.6
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 9.4e-73 278.9 686 33.5
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 1.2e-72 278.5 690 34.1
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 1.6e-72 278.1 673 34.0
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 6.1e-72 276.2 664 33.9
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 7.9e-72 275.8 684 34.5
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 7.9e-72 275.8 667 34.3
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.0e-71 275.4 674 33.7
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 3.9e-71 273.5 672 33.6
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 5.2e-71 273.1 641 34.9
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 6.7e-71 272.7 678 34.4
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 2.2e-69 267.7 678 33.8
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 2.8e-69 267.3 717 32.5
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 1.1e-68 265.4 716 32.3
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 7.0e-68 262.7 679 32.0
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.1e-68 262.3 702 32.6
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.6e-67 260.8 700 32.0
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.5e-67 260.4 703 32.4
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 4.5e-67 260.0 728 31.9
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 1.3e-66 258.5 564 35.1
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 2.2e-66 257.7 589 35.3
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 3.8e-66 256.9 715 32.0
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.5e-65 255.0 657 33.8
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.9e-65 254.6 697 32.3
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.5e-65 254.2 685 32.6
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 7.2e-65 252.7 376 44.4
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 6.1e-64 249.6 674 32.2
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.0e-63 248.8 697 31.9
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.0e-63 248.8 674 32.0
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.4e-63 248.4 654 32.6
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.4e-63 248.4 654 32.6
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 2.2e-61 241.1 521 35.3
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 4.8e-61 240.0 687 32.5
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 9.1e-60 235.7 565 35.0
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 2.2e-58 231.1 676 31.4
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 3.8e-58 230.3 635 30.7
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 9.4e-57 225.7 663 30.2
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.1e-56 224.6 539 34.3
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 8.0e-56 222.6 496 35.1
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 5.7e-54 216.5 513 33.7
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 7.5e-54 216.1 515 32.6
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 1.8e-52 211.5 398 37.4
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 2.7e-51 207.6 688 31.5
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 6.5e-50 203.0 656 29.6
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.1e-48 198.0 546 31.9
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 3.6e-48 197.2 393 35.9
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 4.7e-48 196.8 546 31.3
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 6.8e-47 193.0 485 32.2
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 1.2e-46 192.2 467 34.5
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.3e-42 177.9 504 31.7
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 5.0e-42 176.8 715 28.8
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 5.0e-42 176.8 715 28.8
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 6.1e-40 169.9 605 29.1
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 5.7e-38 163.3 278 42.1
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 1.3e-37 162.2 604 28.6
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.1e-36 159.1 599 27.9
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 2.4e-36 157.9 272 39.3
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 4.1e-36 157.1 247 40.9
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 1.3e-34 152.1 308 36.0
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 1.3e-34 152.1 354 36.4
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 9.5e-33 146.0 540 27.0
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 5.2e-31 140.2 169 53.8
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 9.8e-30 136.0 448 30.1
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 2.2e-29 134.8 265 39.6
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 1.1e-28 132.5 432 30.1
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 1.1e-28 132.5 634 27.6
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 2.0e-27 128.3 288 35.8
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 1.0e-26 125.9 179 43.0
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 1.0e-26 125.9 81 75.3
QL06p040345 Quercus lobata HOM05D003241 ORTHO05D003812 9.5e-25 119.4 163 46.0
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-23 115.5 305 33.8
Lju445A0T12 Lonicera japonica HOM05D003241 ORTHO05D003812 4.0e-23 114.0 253 35.6
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 4.0e-23 114.0 156 46.2
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.3e-21 109.0 351 31.6
TPR.G37958 Trifolium pratense HOM05D003241 ORTHO05D003812 1.4e-20 105.5 256 33.2
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 4.1e-20 104.0 303 31.0
FAN07G0113 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.1e-19 101.7 72 73.6
Lj1A444T9 Lonicera japonica HOM05D003241 ORTHO05D003812 2.7e-19 101.3 250 34.0
QL04p053119 Quercus lobata HOM05D003241 ORTHO05D003812 5.1e-18 97.1 129 48.1
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 5.1e-18 97.1 170 41.8
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 5.1e-18 97.1 170 41.8
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 6.6e-18 96.7 706 23.1
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 4.7e-16 90.5 168 37.5
AagrBONN_evm.TU.Sc2ySwM_344.222 Anthoceros agrestis HOM05D003241 ORTHO05D003812 6.2e-16 90.1 360 29.7
SalBow6G5333 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.4e-15 88.2 72 66.7
SalBow6G1591 Salvia bowleyana HOM05D003241 ORTHO05D003812 5.2e-15 87.0 72 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 6.8e-15 86.7 313 29.4
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 6.8e-15 86.7 285 30.2
Eucgr.G01007 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.3e-13 82.4 154 40.3
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.7e-13 82.0 129 42.6
Hma1.2p1_0358F.1_g134820 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 3.8e-13 80.9 90 51.1
Haze_07845 Corylus avellana HOM05D003241 ORTHO05D003812 8.4e-13 79.7 115 40.9
Hma1.2p1_0765F.1_g215090 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 1.1e-12 79.3 90 51.1
MBI14_g36867_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.4e-12 79.0 240 30.8
Sopen06g019980 Solanum pennellii HOM05D003241 ORTHO05D003812 1.9e-12 78.6 52 73.1
VMungo1127G1632 Vigna mungo HOM05D003241 ORTHO05D003812 3.2e-12 77.8 50 80.0
QL03p023912 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-10 72.4 40 80.0
QL09p029974 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-10 72.4 40 80.0
QL93p0157_0007 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-10 72.4 40 80.0
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 1.1e-09 69.3 174 35.1
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 9.6e-09 66.2 302 29.1
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 6.2e-08 63.5 140 37.1
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 8.1e-08 63.2 224 29.5
RcHm_v2.0_Chr1g0362541 Rosa chinensis HOM05D003241 ORTHO05D003812 8.1e-08 63.2 42 71.4
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.6e-06 58.2 178 33.1
Potri.003G148501 Populus trichocarpa HOM05D003241 ORTHO05D003812 9.9e-06 56.2 66 53.0


User provided reference genes

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